Ss1.1-Pig4-TMW8053P24.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GATGGCTGCGGAGCAGTGCGTGTGGGTTGTCGGGCCCTGTCCCGGAGCCCGGCTGGGTAG GGTCGTCCGGGCCCTCCTGCTGCTGCTGTGCTTTGCGGCCCGAGGAGGTGCACTCTACTT CCACATTGGGGAGACGGAAAAGAAGTGCTTTATTGAGGAGATTCCGGACGAGACCATGGT TATAGGAAACTACCGGACTCAGCTGTATGACAAGCAGCGGGAGGAGTACCAGCCGGCCAC CCCCGGGCTTGGCATGTTCGTGGAGGTGAAGGACCCAGAAGACAAGGTCATTCTGGCCCG GCAGTATGGTTCTGAAGGCAGGTTCACCTTCACCTCCCATACGCCTGGTGAGCACCAGAT CTGTCTTCACTCCAATTCCACAAAGTTCTCCCTTTTTGCTGGAGGCATGCTGAGAGTTCA TCTGGACATCCAGGTGGGTGAACATGCCAACGACTATGCAGAAATTGCTGCCAAAGACAA GTTGAGTGAGTTGCAACTGCGAGTGCGACAGCTAGTGGAGCAAGTGGAGCAGATCCAGAA AGAACAGAACTACCAGCGGTGGCGAGAGGAGCGCTTCCGGCAGACCAGCGAGAGCACCAA CCAGCGGGTGCTGTGGTGGTCTATTCTGCAGACTCTCATCCTCGTAGCCATCGGCGTCTG GCAGATGCGACACCTCAAGAGCTTCTTTGAAGCCAAGAAGCTGGTGTAGCCATCCCAGGC CTCCCAGGCCATCCTTCCTCCCTGGCTGGGCCTCCTGGACTCCCTGGGAAGAAAGGGCCT CCTGGACTGACTTCTCTCTGGCAGGAGGACTGGTTCCCAGCCATGAGTGTTCTGGAGGGA AGAGAGGCCACAGCACAAGCTGAAGGCAGCAGCTTGGCTGGCTAATACTGAGCAGGTGGT GGGGCAAATGCTTGCCCCCTCCCCTGGGCCCTGGGCCCTTTGCAGTAATCTCCCAGGGGC TGGTAAAGCCCCTGGGAGCTCTGCTGACACCTCAGAATCACAGTGTTACTTACTGATCAG GGATGTGAGGCTGTTGTCTGGGGTGGCTGGGGGGAGGGGAGGGGGTGGGCGAGCCAGTCT TCCTTCTGTCTTCCTTTGCTAACTTGGATTTTTGACCAGGTTGGGGTGTAGCTGTGATTC CCTGCCCCCTGGGGAAACCTCACTATTCCCTCCTTGGGCCTAGACTCAGCCTGCTGATCC GGGGGGTGAGTGTCAATTGAGGGTGGGGTAGAGGGGGTTGCAGTGTGGGAAAGTAGCCCT GAGGTTGACCCCGGATTTTTCACATGGTTGTTCTTTTGAAGGGTAGAAAAACTGGGGTCA GGCCAAGCATAGGCCTTGGTGCTGGTTGGGGATGGGGCCTGCAGAGTCTTAGTTACTGAT TTCATTTTCAACAAGTCTAGGTTTGTTACATTGGTTTCCCAATAAAAAAAATTTGACTTC TAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GATGGCTGCGGAGCAGTGCGTGTGGGTTGTCGGGCCCTGTCCCGGAGCCCGGCTGGGTAG GGTCGTCCGGGCCCTCCTGCTGCTGCTGTGCTTTGCGGCCCGAGGAGGTGCACTCTACTT CCACATTGGGGAGACGGAAAAGAAGTGCTTTATTGAGGAGATTCCGGACGAGACCATGGT TATAGGAAACTACCGGACTCAGCTGTATGACAAGCAGCGGGAGGAGTACCAGCCGGCCAC CCCCGGGCTTGGCATGTTCGTGGAGGTGAAGGACCCAGAAGACAAGGTCATTCTGGCCCG GCAGTATGGTTCTGAAGGCAGGTTCACCTTCACCTCCCATACGCCTGGTGAGCACCAGAT CTGTCTTCACTCCAATTCCACAAAGTTCTCCCTTTTTGCTGGAGGCATGCTGAGAGTTCA TCTGGACATCCAGGTGGGTGAACATGCCAACGACTATGCAGAAATTGCTGCCAAAGACAA GTTGAGTGAGTTGCAACTGCGAGTGCGACAGCTAGTGGAGCAAGTGGAGCAGATCCAGAA AGAACAGAACTACCAGCGGTGGCGAGAGGAGCGCTTCCGGCAGACCAGCGAGAGCACCAA CCAGCGGGTGCTGTGGTGGTCTATTCTGCAGACTCTCATCCTCGTAGCCATCGGCGTCTG GCAGATGCGACACCTCAAGAGCTTCTTTGAAGCCAAGAAGCTGGTGTAGCCATCCCAGGC CTCCCAGGCCATCCTTCCTCCCTGGCTGGGCCTCCTGGACTCCCTGGGAAGAAAGGGCCT CCTGGACTGACTTCTCTCTGGCAGGAGGACTGGTTCCCAGCCATGAGTGTTCTGGAGGGA AGAGAGGCCACAGCACAAGCTGAAGGCAGCAGCTTGGCTGGCTAATACTGAGCAGGTGGT GGGGCAAATGCTTGCCCCCTCCCCTGGGCCCTGGGCCCTTTGCAGTAATCTCCCAGGGGC TGGTAAAGCCCCTGGGAGCTCTGCTGACACCTCAGAATCACAGTGTTACTTACTGATCAG GGATGTGAGGCTGTTGTCTGGGGTGGCTGGGGGGAGGGGAGGGGGTGGGCGAGCCAGTCT TCCTTCTGTCTTCCTTTGCTAACTTGGATTTTTGACCAGGTTGGGGTGTAGCTGTGATTC CCTGCCCCCTGGGGAAACCTCACTATTCCCTCCTTGGGCCTAGACTCAGCCTGCTGATCC GGGGGGTGAGTGTCAATTGAGGGTGGGGTAGAGGGGGTTGCAGTGTGGGAAAGTAGCCCT GAGGTTGACCCCGGATTTTTCACATGGTTGTTCTTTTGAAGGGTAGAAAAACTGGGGTCA GGCCAAGCATAGGCCTTGGTGCTGGTTGGGGATGGGGCCTGCAGAGTCTTAGTTACTGAT TTCATTTTCAACAAGTCTAGGTTTGTTACATTGGTTTCCCAATAAAAAAAATTTGACTTC TAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 285-412, + strand, RNAz p=0.99 | |
| 709-1002, - strand, RNAz p=0.998824 | |
| 1230-1431, + strand, RNAz p=0.999758 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 285-412, + strand, RNAz p=0.99 | |
| 709-1002, - strand, RNAz p=0.998824 | |
| 1230-1431, + strand, RNAz p=0.999758 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC001123, + |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-186, gnl|bosTau2|chr7 (21896777-21896962) | |
| 1-186, gnl|Hg17|chr5 (176951821-176952006) | |
| 1-186, gnl|Mm7|chr13 (54681084-54681269) | |
| 285-412, gnl|bosTau2|chr7 (21898303-21898430) | |
| 285-412, gnl|canFam2|chr11 (6514852-6514709) | |
| 285-412, gnl|danRer3|chr14 (26013125-26012992) | |
| 285-412, gnl|dasNov1|scaffold_247499 (380-522) | |
| 285-412, gnl|echTel1|scaffold_157579 (1239-1381) | |
| 285-412, gnl|fr1|chrUn (291097049-291097182) | |
| 285-412, gnl|hg17|chr5 (176953256-176953398) | |
| 285-412, gnl|Hg17|chr5 (176953255-176953382) | |
| 285-412, gnl|loxAfr1|scaffold_16979 (11624-11482) | |
| 285-412, gnl|mm7|chr13 (54682615-54682757) | |
| 285-412, gnl|Mm7|chr13 (54682614-54682741) | |
| 285-412, gnl|monDom2|scaffold_6 (17018434-17018301) | |
| 285-412, gnl|oryCun1|scaffold_81417 (4428-4565) | |
| 285-412, gnl|panTro1|chr4 (184433153-184433295) | |
| 285-412, gnl|rheMac2|chr6 (174123755-174123895) | |
| 285-412, gnl|rn3|chr17 (15073395-15073253) | |
| 285-412, gnl|tetNig1|chr1_random (4466277-4466144) | |
| 285-412, gnl|xenTro1|scaffold_230 (1607578-1607444) | |
| 550-1431, gnl|bosTau2|chr7 (21899886-21900724) | |
| 550-1431, gnl|Hg17|chr5 (176954865-176955711) | |
| 550-1431, gnl|Mm7|chr13 (54684743-54685585) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-186, gnl|bosTau2|chr7 (21896777-21896962) | |
| 1-186, gnl|Hg17|chr5 (176951821-176952006) | |
| 1-186, gnl|Mm7|chr13 (54681084-54681269) | |
| 285-412, gnl|bosTau2|chr7 (21898303-21898430) | |
| 285-412, gnl|canFam2|chr11 (6514852-6514709) | |
| 285-412, gnl|danRer3|chr14 (26013125-26012992) | |
| 285-412, gnl|dasNov1|scaffold_247499 (380-522) | |
| 285-412, gnl|echTel1|scaffold_157579 (1239-1381) | |
| 285-412, gnl|fr1|chrUn (291097049-291097182) | |
| 285-412, gnl|hg17|chr5 (176953256-176953398) | |
| 285-412, gnl|Hg17|chr5 (176953255-176953382) | |
| 285-412, gnl|loxAfr1|scaffold_16979 (11624-11482) | |
| 285-412, gnl|mm7|chr13 (54682615-54682757) | |
| 285-412, gnl|Mm7|chr13 (54682614-54682741) | |
| 285-412, gnl|monDom2|scaffold_6 (17018434-17018301) | |
| 285-412, gnl|oryCun1|scaffold_81417 (4428-4565) | |
| 285-412, gnl|panTro1|chr4 (184433153-184433295) | |
| 285-412, gnl|rheMac2|chr6 (174123755-174123895) | |
| 285-412, gnl|rn3|chr17 (15073395-15073253) | |
| 285-412, gnl|tetNig1|chr1_random (4466277-4466144) | |
| 285-412, gnl|xenTro1|scaffold_230 (1607578-1607444) | |
| 550-1431, gnl|bosTau2|chr7 (21899886-21900724) | |
| 550-1431, gnl|Hg17|chr5 (176954865-176955711) | |
| 550-1431, gnl|Mm7|chr13 (54684743-54685585) |
| Expressed library(ies): 28 entry(ies) | More info |
| Expressed library(ies): 28 entry(ies) | Help | Less info |
| pty (0.713572) | |
| nco (0.646935) | |
| nlu (0.575043) | |
| cje (0.495704) | |
| nca (0.410621) | |
| ute (0.398353) | |
| nep (0.36785) | |
| pgl (0.35545) | |
| jej (0.296765) | |
| cst (0.280073) | |
| hlv (0.278513) | |
| eru (0.240096) | |
| ecc (0.23007) | |
| jca (0.22792) | |
| hea (0.204499) | |
| nbm (0.198649) | |
| fcc (0.197785) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| cki (0.165235) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| che (0.136314) | |
| cov (0.132153) | |
| kid (0.129735) | |
| clu (0.119646) | |
| med (0.116252) | |
| eje (0.0988338) |
| Expressed library(ies): 28 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pty (0.713572) | |
| nco (0.646935) | |
| nlu (0.575043) | |
| cje (0.495704) | |
| nca (0.410621) | |
| ute (0.398353) | |
| nep (0.36785) | |
| pgl (0.35545) | |
| jej (0.296765) | |
| cst (0.280073) | |
| hlv (0.278513) | |
| eru (0.240096) | |
| ecc (0.23007) | |
| jca (0.22792) | |
| hea (0.204499) | |
| nbm (0.198649) | |
| fcc (0.197785) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| cki (0.165235) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| che (0.136314) | |
| cov (0.132153) | |
| kid (0.129735) | |
| clu (0.119646) | |
| med (0.116252) | |
| eje (0.0988338) |