Non-Coding RNA Search

Ss1.1-Pig4-TMW8054A08.5

Sequence:


               
               GGGGAGAGCATATGGAGGAGAGACTGTAGATTGCCAAATTTAGCAGCTCTGGAGAGAGTG
TTTTTTGAATTAAACTTGAGTCCATAGGGATTACATGTTCATTTATGACTGGCAAAACAT
ATCTTCCCAATGCTGAAAGATAAATCCCACTGATACACATGTGGATTTCACAAGTGGTTC
TCAAAAACTATAATAAGACCAAAAAAAAAAAAATCCTTCCCTCAAAATGCAGACGTTCTA
TAATATTTTGGGTATTATAATAAATCGCATGTTATTTTGACCGTATTCTTACTGTCAAGT
CGGGGATTGCGTGAGTGCTGTGCCAACTCTGACCTGAGCCAATTCCGTTCAGAAATGTCA
TCGCTGAGATGTTAAGGTGAGATGTTTTGAAGAACCGAAGGATGGGCAAGGTCGTGACTA
GAGTCAGTCTTGGGTCTTTTAAAATAAGTAAAATTTCAAAAGTTTGGGCAGTGGGAAACC
AGAGCATGGTCAATTTTTTTCTTTTGCCAAATAAGATCAGTTTTAATTTTATTTTTATTA
ATCTTAATTTTGTTCCATTATCCTCTTTTTCATAAGCAAAGATAATTGATAGCACAGAGT
TTAAAGTGCAGTTCTGTAATGTACTTACCTTCGTGAAAAATCGTCTTGGTTTTTCTTGGT
TCTGATGTTTTCATGGTGACCCAGGGAAAATAGTGTGGCAAACCAGAGCTGGTCTGCGGA
CACACATGGAAAACCACTAGCCTGATTCAGTTCATTATCGTGTCAGTTCTCTACCCCAAG
CAACCTTTAAGATCTTATTCAGAAACTTCCAACATCTAACTAGAAAGCAAACTCCTGTAA
TTTAGGACAAAGTGATTAAATTTTCTAGCGAATGCTTGCATTTAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGAGAGCATATGGAGGAGAGACTGTAGATTGCCAAATTTAGCAGCTCTGGAGAGAGTG
TTTTTTGAATTAAACTTGAGTCCATAGGGATTACATGTTCATTTATGACTGGCAAAACAT
ATCTTCCCAATGCTGAAAGATAAATCCCACTGATACACATGTGGATTTCACAAGTGGTTC
TCAAAAACTATAATAAGACCAAAAAAAAAAAAATCCTTCCCTCAAAATGCAGACGTTCTA
TAATATTTTGGGTATTATAATAAATCGCATGTTATTTTGACCGTATTCTTACTGTCAAGT
CGGGGATTGCGTGAGTGCTGTGCCAACTCTGACCTGAGCCAATTCCGTTCAGAAATGTCA
TCGCTGAGATGTTAAGGTGAGATGTTTTGAAGAACCGAAGGATGGGCAAGGTCGTGACTA
GAGTCAGTCTTGGGTCTTTTAAAATAAGTAAAATTTCAAAAGTTTGGGCAGTGGGAAACC
AGAGCATGGTCAATTTTTTTCTTTTGCCAAATAAGATCAGTTTTAATTTTATTTTTATTA
ATCTTAATTTTGTTCCATTATCCTCTTTTTCATAAGCAAAGATAATTGATAGCACAGAGT
TTAAAGTGCAGTTCTGTAATGTACTTACCTTCGTGAAAAATCGTCTTGGTTTTTCTTGGT
TCTGATGTTTTCATGGTGACCCAGGGAAAATAGTGTGGCAAACCAGAGCTGGTCTGCGGA
CACACATGGAAAACCACTAGCCTGATTCAGTTCATTATCGTGTCAGTTCTCTACCCCAAG
CAACCTTTAAGATCTTATTCAGAAACTTCCAACATCTAACTAGAAAGCAAACTCCTGTAA
TTTAGGACAAAGTGATTAAATTTTCTAGCGAATGCTTGCATTTAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               3-884, gnl|bosTau2|chr5 (9309208-9310053)
               

               
               3-884, gnl|Hg17|chr12 (81421328-81422215)
               

               
               3-884, gnl|Mm7|chr10 (105179232-105177946)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-884, gnl|bosTau2|chr5 (9309208-9310053)
               

               
               3-884, gnl|Hg17|chr12 (81421328-81422215)
               

               
               3-884, gnl|Mm7|chr10 (105179232-105177946)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nms (0.213858)
               

               
               spl (0.143184)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               spl (0.143184)

	3-884, gnl\|bosTau2\|chr5 (9309208-9310053)
	3-884, gnl\|Hg17\|chr12 (81421328-81422215)
	3-884, gnl\|Mm7\|chr10 (105179232-105177946)