Ss1.1-Pig4-TMW8054A15.3
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ACATGGATGGCAGCGCTTTTGCAGCCCCACAAATACAACTTCAGAGTTTTAAAAGCCAGC
ACTTTGATCTCTTATTCTCTGTGAATCGCTACAAGAAGTGAGTGATTTTAAAAGTTGTAA
TTCGATGTTGGAAATGGGTTTTGTTTTTGCCTTTCTTTAAAAGGTAGGATCATGTGATGG
GAAAAGCACAACAGTTGGTTATGTTTCAGAGAGAACTTCGCAGCTTGAATCTCTTACTTT
TTGCATCTGTAAGCCAGAACCTAGAGGGGAGGACCAGTTTCAGGAAGTGTCTGAGCTGTA
GCATCAGGATGGGGGAGCCACAAGGGCATCCACCGGGTTTGGGAAGGGAGGATCTCACCT
TCAGTTGACAGAGGGGGCAAGATCAGAACTAGGAGGACAGGGTCAGTGTCCTTGGCAGCT
GAAGGGCATTGATCTAGTAGGAACCCTCTCGGCTGTGATAGGTAGAAGTAGATGCTGTAC
ATTTGAGATGCCCATCCTTAAGCAATGGGTTGAGGGCGTTTTTAGTGTGACAGCCCAAGA
GCTTGGCTATTAGTCCCTTTGACAAGCTCACTCCAAGCCCAGGTTATGGAGCCCACTGTT
TTTAATCATTCTGGACACCTCAAAGTGACGCTAACTTTGAAGATTGCAGAGCAATGCAGC
AAGAAGTGTGCAGCAAAAGCTGGACTGCTCAGTGTGCATTGCTGTGCAGGGTGCCTGAGG
GATGCAAGTATTGGTATGTTTTAATTTGCTGTATTTTTGAATTGGGTAAAGCATTATTTC
TCTGGATTGTGTATTACCGTTCCACCAGTCCCGCAGCCTGCTCCCCAAATGTGATATTAG
GAAGCCTTGTACCGAAAACCAAATGAGCAACTGGGCCTGGTGCCAGACATCTGTTGCCCA
GAATAGCTTCCTCTAGGTGTGCACCACCTTGATTTTGTCTCTTCCCTTTGTGCTCAAGTC
TTCGCCATTGAAATTAGTTTTTCATATTTGATTCCATTGCATAACATTTAATTTCCTCTA
TTAGGAGTCTTTAGCCAGGGAGGGAAGAAAAAGCACATCCCAACATTACTCCCCATCTTT
ACAACATGAAGATTTTGGATCACCCCTGTTTGTATAGAGCCAGAGCTTTCCCCCTCCCCT
CCAAGAGTGCCTGCATCAGGGCTGCGACTTGGTGAGAAGAGTGAGGAGGAAGAAAAACCG
AGTTTCTAAACAACCTCCTCTCCTGGGTTACTGAAATGGCTAAAGAGCAGACACAGGATG
ATGTGGAACCTTAGGTCTCATGTGTAAAAACTTGTGCAATTTTTTTTTCTGTGCTACACT
ACATACAAATCACCAAATTACAAATTAACCCTTTGTGATCCTTGGTGTAATGAGCATTTT
CTTTGGGGCTTTCTCTTTCTTTCTGGGAAGTGGGAGGGAAAGAAGCAAGACATTATCTTG
CTCTTCATTTGTATTTTGGTCCCAAAATGTAAATACAATTTTCTATGTTACTTTTTTGTG
GTAACTACCAAGATGAATATTTTAATTAGATAAGTTATATGAAAAGGAAGGAAAACTCCA
CGTCTAAATAAAAAAAGAAAAAAA
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Blue-coloured subsequences are predicted RNA structures by RNAz
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ACATGGATGGCAGCGCTTTTGCAGCCCCACAAATACAACTTCAGAGTTTTAAAAGCCAGC
ACTTTGATCTCTTATTCTCTGTGAATCGCTACAAGAAGTGAGTGATTTTAAAAGTTGTAA
TTCGATGTTGGAAATGGGTTTTGTTTTTGCCTTTCTTTAAAAGGTAGGATCATGTGATGG
GAAAAGCACAACAGTTGGTTATGTTTCAGAGAGAACTTCGCAGCTTGAATCTCTTACTTT
TTGCATCTGTAAGCCAGAACCTAGAGGGGAGGACCAGTTTCAGGAAGTGTCTGAGCTGTA
GCATCAGGATGGGGGAGCCACAAGGGCATCCACCGGGTTTGGGAAGGGAGGATCTCACCT
TCAGTTGACAGAGGGGGCAAGATCAGAACTAGGAGGACAGGGTCAGTGTCCTTGGCAGCT
GAAGGGCATTGATCTAGTAGGAACCCTCTCGGCTGTGATAGGTAGAAGTAGATGCTGTAC
ATTTGAGATGCCCATCCTTAAGCAATGGGTTGAGGGCGTTTTTAGTGTGACAGCCCAAGA
GCTTGGCTATTAGTCCCTTTGACAAGCTCACTCCAAGCCCAGGTTATGGAGCCCACTGTT
TTTAATCATTCTGGACACCTCAAAGTGACGCTAACTTTGAAGATTGCAGAGCAATGCAGC
AAGAAGTGTGCAGCAAAAGCTGGACTGCTCAGTGTGCATTGCTGTGCAGGGTGCCTGAGG
GATGCAAGTATTGGTATGTTTTAATTTGCTGTATTTTTGAATTGGGTAAAGCATTATTTC
TCTGGATTGTGTATTACCGTTCCACCAGTCCCGCAGCCTGCTCCCCAAATGTGATATTAG
GAAGCCTTGTACCGAAAACCAAATGAGCAACTGGGCCTGGTGCCAGACATCTGTTGCCCA
GAATAGCTTCCTCTAGGTGTGCACCACCTTGATTTTGTCTCTTCCCTTTGTGCTCAAGTC
TTCGCCATTGAAATTAGTTTTTCATATTTGATTCCATTGCATAACATTTAATTTCCTCTA
TTAGGAGTCTTTAGCCAGGGAGGGAAGAAAAAGCACATCCCAACATTACTCCCCATCTTT
ACAACATGAAGATTTTGGATCACCCCTGTTTGTATAGAGCCAGAGCTTTCCCCCTCCCCT
CCAAGAGTGCCTGCATCAGGGCTGCGACTTGGTGAGAAGAGTGAGGAGGAAGAAAAACCG
AGTTTCTAAACAACCTCCTCTCCTGGGTTACTGAAATGGCTAAAGAGCAGACACAGGATG
ATGTGGAACCTTAGGTCTCATGTGTAAAAACTTGTGCAATTTTTTTTTCTGTGCTACACT
ACATACAAATCACCAAATTACAAATTAACCCTTTGTGATCCTTGGTGTAATGAGCATTTT
CTTTGGGGCTTTCTCTTTCTTTCTGGGAAGTGGGAGGGAAAGAAGCAAGACATTATCTTG
CTCTTCATTTGTATTTTGGTCCCAAAATGTAAATACAATTTTCTATGTTACTTTTTTGTG
GTAACTACCAAGATGAATATTTTAATTAGATAAGTTATATGAAAAGGAAGGAAAACTCCA
CGTCTAAATAAAAAAAGAAAAAAA
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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
638-761, 1153785 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN274746.1|),
blast E-value=3e-33, identity=90.48% |
|
638-761, 1372613 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN536510.1|),
blast E-value=3e-33, identity=90.48% |
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638-761, LB02730.CR_D21 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|DV894344.1|),
blast E-value=3e-33, identity=90.48% |
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689-761, 000926BEMN016348HT BEMN Bos taurus cDNA, mRNA sequence
(gb|DY047387.1|), blast E-value=2e-22, identity=94.52% |
|
1353-1508, AM032933 KN-252-spleen, Bos taurus Bos taurus cDNA clone
(emb|AM032933.1|), blast E-value=0, identity=94.87% |
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1353-1508, CR849859 Normalized and Subtracted bovine endometrium tissues
(emb|CR849859.2|), blast E-value=0, identity=94.87% |
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1353-1508, 4069355 BARC 10BOV Bos taurus cDNA clone 10BOV17_K12 3', mRNA
(gb|CK944946.1|), blast E-value=0, identity=94.87% |
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1353-1508, UMC-bcl_0B02-005-b12 Day 16 Corpus luteum from a pregnant animal
(gb|CN998817.1|), blast E-value=0, identity=94.87% |
|
1353-1508, 1259871 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN519088.1|),
blast E-value=0, identity=94.87% |
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1353-1508, 1264747 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN521832.1|),
blast E-value=0, identity=94.87% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
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638-761, 1153785 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN274746.1|),
blast E-value=3e-33, identity=90.48% |
|
638-761, 1372613 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN536510.1|),
blast E-value=3e-33, identity=90.48% |
|
638-761, LB02730.CR_D21 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|DV894344.1|),
blast E-value=3e-33, identity=90.48% |
|
689-761, 000926BEMN016348HT BEMN Bos taurus cDNA, mRNA sequence
(gb|DY047387.1|), blast E-value=2e-22, identity=94.52% |
|
1353-1508, AM032933 KN-252-spleen, Bos taurus Bos taurus cDNA clone
(emb|AM032933.1|), blast E-value=0, identity=94.87% |
|
1353-1508, CR849859 Normalized and Subtracted bovine endometrium tissues
(emb|CR849859.2|), blast E-value=0, identity=94.87% |
|
1353-1508, 4069355 BARC 10BOV Bos taurus cDNA clone 10BOV17_K12 3', mRNA
(gb|CK944946.1|), blast E-value=0, identity=94.87% |
|
1353-1508, UMC-bcl_0B02-005-b12 Day 16 Corpus luteum from a pregnant animal
(gb|CN998817.1|), blast E-value=0, identity=94.87% |
|
1353-1508, 1259871 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN519088.1|),
blast E-value=0, identity=94.87% |
|
1353-1508, 1264747 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN521832.1|),
blast E-value=0, identity=94.87% |
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49-296, gnl|bosTau2|chr2 (82439525-82439296) |
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49-296, gnl|canFam2|chr2 (78624793-78624220) |
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49-296, gnl|dasNov1|scaffold_533 (63415-63919) |
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49-296, gnl|echTel1|scaffold_155097 (7368-7897) |
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49-296, gnl|hg17|chr1 (23832209-23832743) |
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49-296, gnl|Hg17|chr1 (23832311-23832567) |
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49-296, gnl|mm7|chr4 (135383273-135382803) |
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49-296, gnl|Mm7|chr4 (135383183-135382955) |
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49-296, gnl|monDom2|scaffold_91 (268852-269448) |
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49-296, gnl|oryCun1|scaffold_202692 (58769-59288) |
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49-296, gnl|panTro1|chr1 (24210128-24210664) |
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49-296, gnl|rheMac2|chr1 (26368301-26368835) |
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49-296, gnl|rn3|chr5 (154794259-154793785) |
| |
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315-884, gnl|bosTau2|chr2 (82439299-82438717) |
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315-884, gnl|Hg17|chr1 (23832564-23833157) |
| |
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905-1582, gnl|bosTau2|chr2 (82438723-82438062) |
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905-1582, gnl|Hg17|chr1 (23833151-23833851) |
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905-1582, gnl|Mm7|chr4 (135382499-135381811) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
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49-296, gnl|bosTau2|chr2 (82439525-82439296) |
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49-296, gnl|canFam2|chr2 (78624793-78624220) |
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49-296, gnl|dasNov1|scaffold_533 (63415-63919) |
|
49-296, gnl|echTel1|scaffold_155097 (7368-7897) |
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49-296, gnl|hg17|chr1 (23832209-23832743) |
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49-296, gnl|Hg17|chr1 (23832311-23832567) |
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49-296, gnl|mm7|chr4 (135383273-135382803) |
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49-296, gnl|Mm7|chr4 (135383183-135382955) |
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49-296, gnl|monDom2|scaffold_91 (268852-269448) |
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49-296, gnl|oryCun1|scaffold_202692 (58769-59288) |
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49-296, gnl|panTro1|chr1 (24210128-24210664) |
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49-296, gnl|rheMac2|chr1 (26368301-26368835) |
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49-296, gnl|rn3|chr5 (154794259-154793785) |
| |
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315-884, gnl|bosTau2|chr2 (82439299-82438717) |
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315-884, gnl|Hg17|chr1 (23832564-23833157) |
| |
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905-1582, gnl|bosTau2|chr2 (82438723-82438062) |
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905-1582, gnl|Hg17|chr1 (23833151-23833851) |
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905-1582, gnl|Mm7|chr4 (135382499-135381811) |
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csk (0.281492) |
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nms (0.213858) |
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fcc (0.197785) |
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mcp (0.170648) |
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eye (0.170503) |
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nca (0.136874) |
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kid (0.129735) |
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cly (0.120642) |
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pgl (0.118483) |
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csk (0.281492) |
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nms (0.213858) |
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fcc (0.197785) |
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mcp (0.170648) |
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eye (0.170503) |
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nca (0.136874) |
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kid (0.129735) |
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cly (0.120642) |
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pgl (0.118483) |
