Ss1.1-Pig4-TMW8054A19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAGAAGGAGCTAGCGGGCCAGGGCTGAGGAGGCTGATTGCGCTCAGCCCGGGTGAAAGG GCGGCTGCAGCACCGGGCGGGGCCGAGTTCCAGGACTGCAGGCCGGGCTGCCGTGGGGCC TGGGAGCCGCTGCGGAGCCGCGCGCTGCTCAGCCGAGGCGGGGCTGGAGCGCTGAGCTGC CGGCCCCAGCGGCTGCGGTACTCGCTCGCGGCGACCTAGCACCGGTGTCTCCAGCATGAC GGAACTAAGGCAGAGGGTGGTCCACGACCCGGACGCACCGCCCGAGGACAAGGAGTTGGA GTCAGAAGCAAAGGTCGATGGAGAGACTGCATCCGACAGTGAGAGCCGAGTGGAAGCTGT CACCCAACCAACTTCTGCAGACGACACCCCAGAGGTCCTCAACCGGGCCCTTTCCAACTT GTCTTCAAGATGGAAGAACTGGTGGGTGAGAGGCATCCTGACTTTGGCCATGATTGCATT TTTCTTCATCATCATTTACCTGGGACCAATGGTTTTAATGATGATTGTGATGTGTGTTCA GATTAAGTGTTTCCATGAGATTATCACCATCGGCTACAATGTCTACCACTCCTATGACCT GCCCTGGTTCAGAACGCTCAGCTGGTACTTTCTACTGTGTGTAAATTATTTCTTCTATGG TGAAACAGTGACAGATTACTTCTTCACCCTAGTCCAGAGAGAGGAGCCTTTGCGGATTCT CAGTAAATACCACCGATTCATCTCCTTTACCCTTTATCTAACAGGATTCTGCATGTTTGT GCTGAGTCTGGTCAAGAAGCATTATCGACTGCAATTTTACATGTTTGGCTGGACCCATGT AACATTACTGATTGTTGTAACCCAGTCGCATCTCGTTATCCACAACCTGTTTGAAGGCAT GATCTGGTTCATCGTCCCCATCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAGAAGGAGCTAGCGGGCCAGGGCTGAGGAGGCTGATTGCGCTCAGCCCGGGTGAAAGG GCGGCTGCAGCACCGGGCGGGGCCGAGTTCCAGGACTGCAGGCCGGGCTGCCGTGGGGCC TGGGAGCCGCTGCGGAGCCGCGCGCTGCTCAGCCGAGGCGGGGCTGGAGCGCTGAGCTGC CGGCCCCAGCGGCTGCGGTACTCGCTCGCGGCGACCTAGCACCGGTGTCTCCAGCATGAC GGAACTAAGGCAGAGGGTGGTCCACGACCCGGACGCACCGCCCGAGGACAAGGAGTTGGA GTCAGAAGCAAAGGTCGATGGAGAGACTGCATCCGACAGTGAGAGCCGAGTGGAAGCTGT CACCCAACCAACTTCTGCAGACGACACCCCAGAGGTCCTCAACCGGGCCCTTTCCAACTT GTCTTCAAGATGGAAGAACTGGTGGGTGAGAGGCATCCTGACTTTGGCCATGATTGCATT TTTCTTCATCATCATTTACCTGGGACCAATGGTTTTAATGATGATTGTGATGTGTGTTCA GATTAAGTGTTTCCATGAGATTATCACCATCGGCTACAATGTCTACCACTCCTATGACCT GCCCTGGTTCAGAACGCTCAGCTGGTACTTTCTACTGTGTGTAAATTATTTCTTCTATGG TGAAACAGTGACAGATTACTTCTTCACCCTAGTCCAGAGAGAGGAGCCTTTGCGGATTCT CAGTAAATACCACCGATTCATCTCCTTTACCCTTTATCTAACAGGATTCTGCATGTTTGT GCTGAGTCTGGTCAAGAAGCATTATCGACTGCAATTTTACATGTTTGGCTGGACCCATGT AACATTACTGATTGTTGTAACCCAGTCGCATCTCGTTATCCACAACCTGTTTGAAGGCAT GATCTGGTTCATCGTCCCCATCTC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 1-293, gnl|bosTau2|chr13 (30441708-30441409) | |
| 1-293, gnl|canFam2|chr24 (19467488-19466993) | |
| 1-293, gnl|echTel1|scaffold_242596 (4955-5490) | |
| 1-293, gnl|hg17|chr20 (5055168-5055674) | |
| 1-293, gnl|Hg17|chr20 (5055483-5055796) | |
| 1-293, gnl|loxAfr1|scaffold_9740 (59449-59962) | |
| 1-293, gnl|mm7|chr2 (132003786-132004233) | |
| 1-293, gnl|Mm7|chr2 (132004064-132004351) | |
| 1-293, gnl|oryCun1|scaffold_117205 (3407-3923) | |
| 1-293, gnl|panTro1|chr21 (5020028-5020534) | |
| 1-293, gnl|rheMac2|chr10 (38470339-38470830) | |
| 1-293, gnl|rn3|chr3 (119930588-119931043) | |
| 409-528, gnl|bosTau2|chr13 (30400175-30400058) | |
| 409-528, gnl|canFam2|chr24 (19426301-19426164) | |
| 409-528, gnl|danRer3|chr5 (12060972-12061097) | |
| 409-528, gnl|dasNov1|scaffold_6435 (48676-48560) | |
| 409-528, gnl|echTel1|scaffold_313708 (44237-44378) | |
| 409-528, gnl|fr1|chrUn (108048710-108048834) | |
| 409-528, gnl|galGal2|chr22 (318155-318024) | |
| 409-528, gnl|hg17|chr20 (5103802-5103945) | |
| 409-528, gnl|Hg17|chr20 (5103810-5103927) | |
| 409-528, gnl|loxAfr1|scaffold_2153 (140051-139906) | |
| 409-528, gnl|mm7|chr2 (132035224-132035354) | |
| 409-528, gnl|Mm7|chr2 (132035221-132035335) | |
| 409-528, gnl|monDom2|scaffold_1 (95205970-95206100) | |
| 409-528, gnl|oryCun1|scaffold_202409 (18608-18752) | |
| 409-528, gnl|panTro1|chr21 (5069953-5070096) | |
| 409-528, gnl|rheMac2|chr10 (38516987-38517128) | |
| 409-528, gnl|rn3|chr3 (119957496-119957625) | |
| 409-528, gnl|tetNig1|chr12 (11380254-11380363) | |
| 409-528, gnl|xenTro1|scaffold_110 (842916-843075) | |
| 624-765, gnl|bosTau2|chr13 (30397194-30397053) | |
| 624-765, gnl|canFam2|chr24 (19423009-19422854) | |
| 624-765, gnl|danRer3|chr5 (12068578-12068727) | |
| 624-765, gnl|dasNov1|scaffold_162045 (3861-3986) | |
| 624-765, gnl|echTel1|scaffold_103072 (1441-1596) | |
| 624-765, gnl|fr1|chrUn (108049476-108049634) | |
| 624-765, gnl|galGal2|chr22 (317085-316931) | |
| 624-765, gnl|hg17|chr20 (5107451-5107606) | |
| 624-765, gnl|Hg17|chr20 (5107462-5107603) | |
| 624-765, gnl|loxAfr1|scaffold_2153 (136402-136247) | |
| 624-765, gnl|mm7|chr2 (132038066-132038221) | |
| 624-765, gnl|Mm7|chr2 (132038077-132038218) | |
| 624-765, gnl|monDom2|scaffold_1 (95212147-95212302) | |
| 624-765, gnl|oryCun1|scaffold_208095 (427-272) | |
| 624-765, gnl|panTro1|chr21 (5073598-5073753) | |
| 624-765, gnl|rheMac2|chr10 (38520853-38521008) | |
| 624-765, gnl|rn3|chr3 (119960208-119960363) | |
| 624-765, gnl|tetNig1|chr12 (11380989-11381147) | |
| 624-765, gnl|xenTro1|scaffold_110 (844232-844390) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-293, gnl|bosTau2|chr13 (30441708-30441409) | |
| 1-293, gnl|canFam2|chr24 (19467488-19466993) | |
| 1-293, gnl|echTel1|scaffold_242596 (4955-5490) | |
| 1-293, gnl|hg17|chr20 (5055168-5055674) | |
| 1-293, gnl|Hg17|chr20 (5055483-5055796) | |
| 1-293, gnl|loxAfr1|scaffold_9740 (59449-59962) | |
| 1-293, gnl|mm7|chr2 (132003786-132004233) | |
| 1-293, gnl|Mm7|chr2 (132004064-132004351) | |
| 1-293, gnl|oryCun1|scaffold_117205 (3407-3923) | |
| 1-293, gnl|panTro1|chr21 (5020028-5020534) | |
| 1-293, gnl|rheMac2|chr10 (38470339-38470830) | |
| 1-293, gnl|rn3|chr3 (119930588-119931043) | |
| 409-528, gnl|bosTau2|chr13 (30400175-30400058) | |
| 409-528, gnl|canFam2|chr24 (19426301-19426164) | |
| 409-528, gnl|danRer3|chr5 (12060972-12061097) | |
| 409-528, gnl|dasNov1|scaffold_6435 (48676-48560) | |
| 409-528, gnl|echTel1|scaffold_313708 (44237-44378) | |
| 409-528, gnl|fr1|chrUn (108048710-108048834) | |
| 409-528, gnl|galGal2|chr22 (318155-318024) | |
| 409-528, gnl|hg17|chr20 (5103802-5103945) | |
| 409-528, gnl|Hg17|chr20 (5103810-5103927) | |
| 409-528, gnl|loxAfr1|scaffold_2153 (140051-139906) | |
| 409-528, gnl|mm7|chr2 (132035224-132035354) | |
| 409-528, gnl|Mm7|chr2 (132035221-132035335) | |
| 409-528, gnl|monDom2|scaffold_1 (95205970-95206100) | |
| 409-528, gnl|oryCun1|scaffold_202409 (18608-18752) | |
| 409-528, gnl|panTro1|chr21 (5069953-5070096) | |
| 409-528, gnl|rheMac2|chr10 (38516987-38517128) | |
| 409-528, gnl|rn3|chr3 (119957496-119957625) | |
| 409-528, gnl|tetNig1|chr12 (11380254-11380363) | |
| 409-528, gnl|xenTro1|scaffold_110 (842916-843075) | |
| 624-765, gnl|bosTau2|chr13 (30397194-30397053) | |
| 624-765, gnl|canFam2|chr24 (19423009-19422854) | |
| 624-765, gnl|danRer3|chr5 (12068578-12068727) | |
| 624-765, gnl|dasNov1|scaffold_162045 (3861-3986) | |
| 624-765, gnl|echTel1|scaffold_103072 (1441-1596) | |
| 624-765, gnl|fr1|chrUn (108049476-108049634) | |
| 624-765, gnl|galGal2|chr22 (317085-316931) | |
| 624-765, gnl|hg17|chr20 (5107451-5107606) | |
| 624-765, gnl|Hg17|chr20 (5107462-5107603) | |
| 624-765, gnl|loxAfr1|scaffold_2153 (136402-136247) | |
| 624-765, gnl|mm7|chr2 (132038066-132038221) | |
| 624-765, gnl|Mm7|chr2 (132038077-132038218) | |
| 624-765, gnl|monDom2|scaffold_1 (95212147-95212302) | |
| 624-765, gnl|oryCun1|scaffold_208095 (427-272) | |
| 624-765, gnl|panTro1|chr21 (5073598-5073753) | |
| 624-765, gnl|rheMac2|chr10 (38520853-38521008) | |
| 624-765, gnl|rn3|chr3 (119960208-119960363) | |
| 624-765, gnl|tetNig1|chr12 (11380989-11381147) | |
| 624-765, gnl|xenTro1|scaffold_110 (844232-844390) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ute (0.132784) |