Non-Coding RNA Search

Ss1.1-Pig4-TMW8054B04.5

Sequence:


               
               GGAGGCGGGGCTCTGTCGAGTTCCTCTTCCACCTTCCCCCATCCTTCTCTTCCAACCTCC
GTACGGCCCCTAGATTGATTCCAGTCTGCTGCAGCTGCTCTCCAGCCGTTTGCAGGACTC
AAACTACAGCCGGTGTTCACAGGATGGCGATCCGTGTTTATATTGCATCTTCCTCTGGCT
CCACGGCGATTAAGAAGAAACAGCAAGATGTGCTTGGTTTCTTAGAAGCTAACAAAATAG
GATTTGAAGAAAAAGATATTGCGGCCAATGAAGAGAATCGTAAGTGGATGAGAGAAAATG
TACCTGAAAATAGACGACCAGCTACAGGGTATCCCCTGCCACCTCAGATTTTCAATGAAA
GCCAGTACCGTGGGGACTATGATGCCTTCTTTGAAGCCAGAGAAAATAATGCAGTGTATG
CCTTTTTAGGCTTGAAGGCCCCACCTGGTTCAAAGGAAGCAGAAGCTCAGGCAAAGAAGC
AAGTGTGAATCTTAAACATACTTACCACCTTAAGCATCTTGAAAAAAAGTCTCCATTGCT
TTTATAAAATAACAAAATTAGCTTGGCTTTAAAATAAGTAGGCTTAATGTTGAAATCATA
GATTAGTTGTCGTTTTCACATGCAAACAATCAAAATGAATACATAATTAAAATGTGAAAG
TTATGATGAGGAAAATGGGAGGTGAACATAAAATTTTAAGTAGATGTAATGGAATAATAT
TGTTGTCTGTGAAGGCATTTTATGTATTTCATTGATTTTAAAAGCAAACACCTGTTACCT
TTTTTTGTTATTATTATTGCAGCTTAAGCATATCTGTAGCATACCTGTAGCTTTAAAATT
ACATTGAGTAATTTTAAAAGGAGAGTGAGAAAGAATCTGTCTCTTGTTCCCAAATGGCTT
CATTTATTTTATTGAACAAAAATATGTACCTTTTGATATGAAATTATTGTGATTAAAAAG
TAGTTGCAGATAATGTTTATGATACATGAGGCATTGTAATTTCTTATGGTAATTATAACA
TCATTCTTTTGTAGTTGAAACTTCTGTGTACCAAACCACAGGTTCTCTAGGCTTCTAAAT
GTAGCCTTTCATTGCATATTTCAGTGATCAGAATAGATGGTCTCCCACCAAAAAAGAAAA
GAAAAAGATGTATTCAGTTGACGAGTTTTTGGCTACACAGCTATGATGCAATCATGTTAC
TAAGTTGCTTATCCCAGTTAAATATGTAAATGTATGTTATGGAAGTGGGATGGCAAATAA
GTTTAAAATGGCATCTTTTTGCAAAGAGCTCAGACTTTTAATTAACTATTGCAAAATAGG
ATGTAACTCCTTTTCTCCCTTTTAAAACAATTTGTGATCACAAAAGCCACTATCTCAGAT
ATTTCAACTTTTTGTTTCAGCTTAGGCATATATTGTATGAGAACATTAACCCAAGTAGAG
AGAATGTTTTCTATGCCTCTATTCCAGTGAGTAGCATAAGTATCAGATAAAAGGATCAAT
TTTTTAAATGTTAATTCTGAAAATTTCTAAGAAGACAAGAAATATTATGGCCTAAATCAC
CCAGAAAACATATATATTATACTTTATTTCAACATTACTTTATTACTAAAACACTTTTTA
CTTCAAATTAGTTTATCTTATCATTTGATGTATGCAAGTTTGTGCTTTTTGACAAAATCA
ACATGTAATGAAGAAATGGCTTTGTTTTTACTGAGATTCAAACTTAATGAAATGATTTAA
AATAAACTCAGTGCTTTCAGAAACACAATTTATGTGTTCATGGAGTTTATAAATAATGTA
ATAATAATTTTAGGTCAGTAATACATTTTTAGAGGATGGAGAAGGAGAAAAGAAAATAAC
AGAAAGAAAACAATTTGAATGAAATTTCTAAATTTCTTCTATGGGCTCTGACTTTTGCAA
TATACACCAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGGCGGGGCTCTGTCGAGTTCCTCTTCCACCTTCCCCCATCCTTCTCTTCCAACCTCC
GTACGGCCCCTAGATTGATTCCAGTCTGCTGCAGCTGCTCTCCAGCCGTTTGCAGGACTC
AAACTACAGCCGGTGTTCACAGGATGGCGATCCGTGTTTATATTGCATCTTCCTCTGGCT
CCACGGCGATTAAGAAGAAACAGCAAGATGTGCTTGGTTTCTTAGAAGCTAACAAAATAG
GATTTGAAGAAAAAGATATTGCGGCCAATGAAGAGAATCGTAAGTGGATGAGAGAAAATG
TACCTGAAAATAGACGACCAGCTACAGGGTATCCCCTGCCACCTCAGATTTTCAATGAAA
GCCAGTACCGTGGGGACTATGATGCCTTCTTTGAAGCCAGAGAAAATAATGCAGTGTATG
CCTTTTTAGGCTTGAAGGCCCCACCTGGTTCAAAGGAAGCAGAAGCTCAGGCAAAGAAGC
AAGTGTGAATCTTAAACATACTTACCACCTTAAGCATCTTGAAAAAAAGTCTCCATTGCT
TTTATAAAATAACAAAATTAGCTTGGCTTTAAAATAAGTAGGCTTAATGTTGAAATCATA
GATTAGTTGTCGTTTTCACATGCAAACAATCAAAATGAATACATAATTAAAATGTGAAAG
TTATGATGAGGAAAATGGGAGGTGAACATAAAATTTTAAGTAGATGTAATGGAATAATAT
TGTTGTCTGTGAAGGCATTTTATGTATTTCATTGATTTTAAAAGCAAACACCTGTTACCT
TTTTTTGTTATTATTATTGCAGCTTAAGCATATCTGTAGCATACCTGTAGCTTTAAAATT
ACATTGAGTAATTTTAAAAGGAGAGTGAGAAAGAATCTGTCTCTTGTTCCCAAATGGCTT
CATTTATTTTATTGAACAAAAATATGTACCTTTTGATATGAAATTATTGTGATTAAAAAG
TAGTTGCAGATAATGTTTATGATACATGAGGCATTGTAATTTCTTATGGTAATTATAACA
TCATTCTTTTGTAGTTGAAACTTCTGTGTACCAAACCACAGGTTCTCTAGGCTTCTAAAT
GTAGCCTTTCATTGCATATTTCAGTGATCAGAATAGATGGTCTCCCACCAAAAAAGAAAA
GAAAAAGATGTATTCAGTTGACGAGTTTTTGGCTACACAGCTATGATGCAATCATGTTAC
TAAGTTGCTTATCCCAGTTAAATATGTAAATGTATGTTATGGAAGTGGGATGGCAAATAA
GTTTAAAATGGCATCTTTTTGCAAAGAGCTCAGACTTTTAATTAACTATTGCAAAATAGG
ATGTAACTCCTTTTCTCCCTTTTAAAACAATTTGTGATCACAAAAGCCACTATCTCAGAT
ATTTCAACTTTTTGTTTCAGCTTAGGCATATATTGTATGAGAACATTAACCCAAGTAGAG
AGAATGTTTTCTATGCCTCTATTCCAGTGAGTAGCATAAGTATCAGATAAAAGGATCAAT
TTTTTAAATGTTAATTCTGAAAATTTCTAAGAAGACAAGAAATATTATGGCCTAAATCAC
CCAGAAAACATATATATTATACTTTATTTCAACATTACTTTATTACTAAAACACTTTTTA
CTTCAAATTAGTTTATCTTATCATTTGATGTATGCAAGTTTGTGCTTTTTGACAAAATCA
ACATGTAATGAAGAAATGGCTTTGTTTTTACTGAGATTCAAACTTAATGAAATGATTTAA
AATAAACTCAGTGCTTTCAGAAACACAATTTATGTGTTCATGGAGTTTATAAATAATGTA
ATAATAATTTTAGGTCAGTAATACATTTTTAGAGGATGGAGAAGGAGAAAAGAAAATAAC
AGAAAGAAAACAATTTGAATGAAATTTCTAAATTTCTTCTATGGGCTCTGACTTTTGCAA
TATACACCAGAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|57160805|emb|CAI39436.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57160805|emb|CAI39436.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               443-743, gnl|bosTau2|chr20 (33854415-33854713)
               

               
               443-743, gnl|Hg17|chrX (80358837-80359138)
               

               
               443-743, gnl|Mm7|chrX (104487487-104487759)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               443-743, gnl|bosTau2|chr20 (33854415-33854713)
               

               
               443-743, gnl|Hg17|chrX (80358837-80359138)
               

               
               443-743, gnl|Mm7|chrX (104487487-104487759)

Expressed library(ies): 25 entry(ies)

More info

Expressed library(ies): 25 entry(ies)

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               liv (0.877706)
               

               
               fat (0.737137)
               

               
               fco (0.628832)
               

               
               ret (0.3862)
               

               
               nlu (0.383362)
               

               
               clu (0.358938)
               

               
               rec (0.346141)
               

               
               mga (0.32041)
               

               
               sme (0.305437)
               

               
               lin (0.291206)
               

               
               sug (0.254582)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               eli (0.151814)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)
               

               
               eje (0.0988338)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.877706)
               

               
               fat (0.737137)
               

               
               fco (0.628832)
               

               
               ret (0.3862)
               

               
               nlu (0.383362)
               

               
               clu (0.358938)
               

               
               rec (0.346141)
               

               
               mga (0.32041)
               

               
               sme (0.305437)
               

               
               lin (0.291206)
               

               
               sug (0.254582)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               eli (0.151814)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)
               

               
               eje (0.0988338)

	443-743, gnl\|bosTau2\|chr20 (33854415-33854713)
	443-743, gnl\|Hg17\|chrX (80358837-80359138)
	443-743, gnl\|Mm7\|chrX (104487487-104487759)

	liv (0.877706)
	fat (0.737137)
	fco (0.628832)
	ret (0.3862)
	nlu (0.383362)
	clu (0.358938)
	rec (0.346141)
	mga (0.32041)
	sme (0.305437)
	lin (0.291206)
	sug (0.254582)
	cty (0.20816)
	tes (0.207814)
	eli (0.151814)
	lnt (0.142308)
	hlv (0.139256)
	thg (0.126791)
	ese (0.126502)
	bla (0.124347)
	tra (0.123092)
	cly (0.120642)
	eru (0.120048)
	pgl (0.118483)
	cbl (0.114797)
	eje (0.0988338)