Non-Coding RNA Search

Ss1.1-Pig4-TMW8054B05.3

Sequence:


               
               GATGGAGGACCTGAAGGCTCAGCTCCAGAGGGACTACACCTACATGACCCAGTGCCTGCA
GGAGGAGCGCTACAGGTACGAGCGGCTGGAGGAGCAGCTCAACGACCTGACCGAGCTTCA
CCAGAATGAGATGACCAACCTGAAGCAGGAGCTGGCCAGCATGGAGGAGAAGGTGGCCTA
CCAGTCCTATGAGAGGGCCCGGGACATCCAGGAGGCCGTGGAGTCCTGCCTGACCCGGGT
CACCAAGCTGGAGCTGCAGCAGCAACAGCAGCAGGTGGTGCAGCTGGAGGGCGTGGAGAA
CGCCAACGCGCGGGCGCTGCTGGGCAAGTTCATCAACGTGATCCTGGCGCTCATGGCCGT
GCTGCTGGTGTTCGTGTCCACCATCGCCAACTTCATCACGCCCCTCATGAAGACCCGCCT
GCGCATCACCAGCACCGCCCTCCTGGTCCTCGTCCTCTTCCTCCTCTGGAAGCACTGGGA
CTCCCTCACCTACCTCCTGGAGCACGTGCTGCTGCCCAGCTGAGCGGCGGCCTGTCCCGA
CCCTGTGCGGTCCCCGGCGCCCAGCTGGCCATGCTTCCCCGCGGGGGGGACCCTGGGGCT
CCGGAGTCCCTGGGACTTCTTCCTGTGTCCAGTTTGGCCTCCTGCCCAAACTGTCCATTC
CAGCTCCGTCTGCCCCCTTCTCTGTTCTTGCTTTCTTCGGTCCGATGCCTTCTGTCCCTG
TTGGCCTGAAGGGAGCCTCCAGGGTCACCCCGGCTGGAGGCGGCAGGGACGTCCGTGACC
AAATAGAGCAGGGGACACCCTGATGGACTGTTTTGATTAAATTTATAGTCACACGATGAT
TTCTCCCAGCTGACACAGATGACATGGTTCAGGAAGGCCAATGAGCATGGGGACAGGGGA
GGGCCATGCCTCAGCTTCCCTGGGGGAGAGGCTGGCAGCTCCTGTTCCCTCCTCCAGAGC
TGTTTGAGGCTGGATAGTGGGTTGGGCCCTTCTGGGATCTGAAGGAGGCAGGCAGGCTCT
CGGGAGGCTGGGTGGGCATGGCTTTGGATTCATGTTTTCTCTGGAGTTCTTTCTGCCTGT
CCCTGGATCTGCTCTTTTCAGGGAAAGAGGCCCGAGGGGCCCCCAGCCTCAGCCCAAGCC
CTTAAGGTTCTATTTATTTTATTTATTTATTTATTCGTTCCTTTGGACCGGATCCCCCTG
AGCTCCAGGGAGAGGGCCCCGCCCTCACCCCGTCCTCTCTCTGAAGCCAGGGCTGCTTCT
TGGCTTGTCAGGCACTTCCATCCCACTTAGCTCTGGATCATCCTGGCTGCGAGAAGTGGG
GGCAGGGCCAGCCGGCTCCACCTTCCCAGGCAGCCCCTCGGCCTCTTTTATACGTCTATT
TATTTGGTATGTGTGTGTTTGTGTGGGGGAGGTTGTTTGTTGCTTTATTTTTTTAAGGCT
CTGGAGTGTTGTGTATGGTTTCTCTTCCCTTCCCAGCCTCCCCGAGGGCGCTTCCAAGAA
GAGGGGGGGCTTCTCGGAAAAGGAGAAAGAAATCCCCTTGGAGCAGGGGAGGGCAGGGCC
TGCCAGCTATTGTGGACCTTCCCGAGAAATAAATACCCTCTAAATTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGGAGGACCTGAAGGCTCAGCTCCAGAGGGACTACACCTACATGACCCAGTGCCTGCA
GGAGGAGCGCTACAGGTACGAGCGGCTGGAGGAGCAGCTCAACGACCTGACCGAGCTTCA
CCAGAATGAGATGACCAACCTGAAGCAGGAGCTGGCCAGCATGGAGGAGAAGGTGGCCTA
CCAGTCCTATGAGAGGGCCCGGGACATCCAGGAGGCCGTGGAGTCCTGCCTGACCCGGGT
CACCAAGCTGGAGCTGCAGCAGCAACAGCAGCAGGTGGTGCAGCTGGAGGGCGTGGAGAA
CGCCAACGCGCGGGCGCTGCTGGGCAAGTTCATCAACGTGATCCTGGCGCTCATGGCCGT
GCTGCTGGTGTTCGTGTCCACCATCGCCAACTTCATCACGCCCCTCATGAAGACCCGCCT
GCGCATCACCAGCACCGCCCTCCTGGTCCTCGTCCTCTTCCTCCTCTGGAAGCACTGGGA
CTCCCTCACCTACCTCCTGGAGCACGTGCTGCTGCCCAGCTGAGCGGCGGCCTGTCCCGA
CCCTGTGCGGTCCCCGGCGCCCAGCTGGCCATGCTTCCCCGCGGGGGGGACCCTGGGGCT
CCGGAGTCCCTGGGACTTCTTCCTGTGTCCAGTTTGGCCTCCTGCCCAAACTGTCCATTC
CAGCTCCGTCTGCCCCCTTCTCTGTTCTTGCTTTCTTCGGTCCGATGCCTTCTGTCCCTG
TTGGCCTGAAGGGAGCCTCCAGGGTCACCCCGGCTGGAGGCGGCAGGGACGTCCGTGACC
AAATAGAGCAGGGGACACCCTGATGGACTGTTTTGATTAAATTTATAGTCACACGATGAT
TTCTCCCAGCTGACACAGATGACATGGTTCAGGAAGGCCAATGAGCATGGGGACAGGGGA
GGGCCATGCCTCAGCTTCCCTGGGGGAGAGGCTGGCAGCTCCTGTTCCCTCCTCCAGAGC
TGTTTGAGGCTGGATAGTGGGTTGGGCCCTTCTGGGATCTGAAGGAGGCAGGCAGGCTCT
CGGGAGGCTGGGTGGGCATGGCTTTGGATTCATGTTTTCTCTGGAGTTCTTTCTGCCTGT
CCCTGGATCTGCTCTTTTCAGGGAAAGAGGCCCGAGGGGCCCCCAGCCTCAGCCCAAGCC
CTTAAGGTTCTATTTATTTTATTTATTTATTTATTCGTTCCTTTGGACCGGATCCCCCTG
AGCTCCAGGGAGAGGGCCCCGCCCTCACCCCGTCCTCTCTCTGAAGCCAGGGCTGCTTCT
TGGCTTGTCAGGCACTTCCATCCCACTTAGCTCTGGATCATCCTGGCTGCGAGAAGTGGG
GGCAGGGCCAGCCGGCTCCACCTTCCCAGGCAGCCCCTCGGCCTCTTTTATACGTCTATT
TATTTGGTATGTGTGTGTTTGTGTGGGGGAGGTTGTTTGTTGCTTTATTTTTTTAAGGCT
CTGGAGTGTTGTGTATGGTTTCTCTTCCCTTCCCAGCCTCCCCGAGGGCGCTTCCAAGAA
GAGGGGGGGCTTCTCGGAAAAGGAGAAAGAAATCCCCTTGGAGCAGGGGAGGGCAGGGCC
TGCCAGCTATTGTGGACCTTCCCGAGAAATAAATACCCTCTAAATTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8N4H2_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8N4H2_HUMAN

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               488-607, - strand, RNAz p=0.752759
               

               
               1087-1256, - strand, RNAz p=0.978381
               

               
               1489-1608, - strand, RNAz p=0.884736

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               488-607, - strand, RNAz p=0.752759
               

               
               1087-1256, - strand, RNAz p=0.978381
               

               
               1489-1608, - strand, RNAz p=0.884736

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               209-813, gnl|bosTau2|chr16 (1133616-1134200)
               

               
               209-813, gnl|Hg17|chr1 (201972595-201973184)
               

               
               209-813, gnl|Mm7|chr1 (132258774-132258195)
               


               
               969-1309, gnl|bosTau2|chr16 (1134389-1134709)
               

               
               969-1309, gnl|Hg17|chr1 (201973493-201973809)
               

               
               969-1309, gnl|Mm7|chr1 (132257932-132257586)
               


               
               1360-1608, gnl|bosTau2|chr16 (1134720-1134961)
               

               
               1360-1608, gnl|canFam2|chr38 (4774481-4774865)
               

               
               1360-1608, gnl|hg17|chr1 (201973713-201974066)
               

               
               1360-1608, gnl|Hg17|chr1 (201973880-201974121)
               

               
               1360-1608, gnl|loxAfr1|scaffold_15052 (22606-22939)
               

               
               1360-1608, gnl|mm7|chr1 (132257699-132257333)
               

               
               1360-1608, gnl|Mm7|chr1 (132257517-132257276)
               

               
               1360-1608, gnl|monDom2|scaffold_13 (6847412-6847842)
               

               
               1360-1608, gnl|oryCun1|scaffold_202391 (47756-48026)
               

               
               1360-1608, gnl|panTro1|chr1 (184927792-184928147)
               

               
               1360-1608, gnl|rheMac2|chr1 (165143008-165142653)
               

               
               1360-1608, gnl|rn3|chr13 (45260800-45260438)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               209-813, gnl|bosTau2|chr16 (1133616-1134200)
               

               
               209-813, gnl|Hg17|chr1 (201972595-201973184)
               

               
               209-813, gnl|Mm7|chr1 (132258774-132258195)
               


               
               969-1309, gnl|bosTau2|chr16 (1134389-1134709)
               

               
               969-1309, gnl|Hg17|chr1 (201973493-201973809)
               

               
               969-1309, gnl|Mm7|chr1 (132257932-132257586)
               


               
               1360-1608, gnl|bosTau2|chr16 (1134720-1134961)
               

               
               1360-1608, gnl|canFam2|chr38 (4774481-4774865)
               

               
               1360-1608, gnl|hg17|chr1 (201973713-201974066)
               

               
               1360-1608, gnl|Hg17|chr1 (201973880-201974121)
               

               
               1360-1608, gnl|loxAfr1|scaffold_15052 (22606-22939)
               

               
               1360-1608, gnl|mm7|chr1 (132257699-132257333)
               

               
               1360-1608, gnl|Mm7|chr1 (132257517-132257276)
               

               
               1360-1608, gnl|monDom2|scaffold_13 (6847412-6847842)
               

               
               1360-1608, gnl|oryCun1|scaffold_202391 (47756-48026)
               

               
               1360-1608, gnl|panTro1|chr1 (184927792-184928147)
               

               
               1360-1608, gnl|rheMac2|chr1 (165143008-165142653)
               

               
               1360-1608, gnl|rn3|chr13 (45260800-45260438)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               nbm (0.496623)
               

               
               nca (0.273748)
               

               
               ece (0.229305)
               

               
               eli (0.151814)
               

               
               hyp (0.142837)
               

               
               ebs (0.118301)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nbm (0.496623)
               

               
               nca (0.273748)
               

               
               ece (0.229305)
               

               
               eli (0.151814)
               

               
               hyp (0.142837)
               

               
               ebs (0.118301)

	488-607, - strand, RNAz p=0.752759
	1087-1256, - strand, RNAz p=0.978381
	1489-1608, - strand, RNAz p=0.884736

	209-813, gnl\|bosTau2\|chr16 (1133616-1134200)
	209-813, gnl\|Hg17\|chr1 (201972595-201973184)
	209-813, gnl\|Mm7\|chr1 (132258774-132258195)

	969-1309, gnl\|bosTau2\|chr16 (1134389-1134709)
	969-1309, gnl\|Hg17\|chr1 (201973493-201973809)
	969-1309, gnl\|Mm7\|chr1 (132257932-132257586)

	1360-1608, gnl\|bosTau2\|chr16 (1134720-1134961)
	1360-1608, gnl\|canFam2\|chr38 (4774481-4774865)
	1360-1608, gnl\|hg17\|chr1 (201973713-201974066)
	1360-1608, gnl\|Hg17\|chr1 (201973880-201974121)
	1360-1608, gnl\|loxAfr1\|scaffold_15052 (22606-22939)
	1360-1608, gnl\|mm7\|chr1 (132257699-132257333)
	1360-1608, gnl\|Mm7\|chr1 (132257517-132257276)
	1360-1608, gnl\|monDom2\|scaffold_13 (6847412-6847842)
	1360-1608, gnl\|oryCun1\|scaffold_202391 (47756-48026)
	1360-1608, gnl\|panTro1\|chr1 (184927792-184928147)
	1360-1608, gnl\|rheMac2\|chr1 (165143008-165142653)
	1360-1608, gnl\|rn3\|chr13 (45260800-45260438)

	nbm (0.496623)
	nca (0.273748)
	ece (0.229305)
	eli (0.151814)
	hyp (0.142837)
	ebs (0.118301)