Ss1.1-Pig4-TMW8054B15.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCATCGGCTGGCTGCACATCGACGGCGCCAACCTGTCCGTCTTGCTGGTGGAGCACGCG CTCTCCAAGGTCCACTTCACCGCCGAGCGCAGCTCCTACTACAAATCCCTGCTGTCTGCC GAGGAGGCCGCCAAGCAGAAGAAGGAGAAGGTCTGGGCCCACTACGAGGAGCAGCCCGTG GAGGAGGTGGCGCCCATGCTGGAGGAGAAGGAGCGCTCGGCCAGCTACAAGCCAGTGTTT GTGACCGAGATCACCGACGACCTGCACTTCTACGTGCAGGACGTGGAGACAGGCACCCAG CTGGAGAAGCTAATGGAGAACATGCGCAATGACATCGCCAGCCACCCTCCCGTCGAGGGC TCCTACGCCCCGCGCCGCGGAGAATTCTGCATTGCCAAATTCGTGGACGGAGAATGGTAC CGGGCCCGCGTAGAGAAAGTCGAGTCTCCTGCCAAAGTGCACGTCTTCTACATCGACTAC GGCAACAGGGAGATCCTGCCATCCACCCGCCTGGGCACTCTGCCACCTGCCTTCAGCACC CGCGTGCTGCCAGCTCAAGCCACAGAGTACGCCTTCGCCTTCATCCAGGTTCCCCAGGAC GAGGACGCGCGAACAGACGCCGTGGATAGCGTGGTGCGGGACATCCAGAACACGCAGTGC CTGCTCAACGTGGAGCACCTGAGCGCCGGCTGCCCCCATGTCACCCTGCAGTTTGCCGAT TCCAAGGGGGACGTGGGGCTGGGCCTGGTGAAGGAGGGGCTGGTCATGGTGGAGGTGCGC AAGGAGAAGCAGTTCCAGAAGGTGATCACAGAGTACCTGAATGCCCAGGAGTCAGCCAAG AGCGCCAGGCTGAACCTGTGGCGCTACGGAGACTTCCGGGCCGATGACGCAGATGAGTTT GGCTACAGCCGCTAGAGAGGGGATCGGGTCTGGCCTCCAGCACTGCTCACGCCAGTACCT CTTCCTCTGCCGGGAGGATGTTTTCAGCTCCAGACCTCAAATCAGGGGCATAGATTGGGT CCAGCTTTGCTTCAGTGTATGGAAATGACTTGTGGAATGGCATCTGGGCTGGGGGTGGGG TCAGGGGCACCCAGGGCTCTCGGGGGGGTGGGGGCAGGGCATTGTCTTCCGCGGTCTCTC CCAGCTGATTTTGTTTTTATTTGGGGGTTTGCGGTGTGTTTGGTTTGGTTTTTTAATTGT CCTCAAATCAGGAAGAAACACGAAAGACTTTGTCATAATGGAGGGCATATCCTGGCACCC AAGGCCAGCTGCCAGTTGGCACCCCACTTCGACCCCAGACCGCCCTTCTCCCCAGCTCTC TGTCCAGCTGTTGATTATGTGATTTCTCTGATACGTCCATTCTCAAATGCCAGCGTGTCC ACATCTGCCCCTTTGCCAGCCTTCCCTGTTTCTGTATTTAAAGCTTTTTGAGACCCAATA AAATAGTACATG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCATCGGCTGGCTGCACATCGACGGCGCCAACCTGTCCGTCTTGCTGGTGGAGCACGCG CTCTCCAAGGTCCACTTCACCGCCGAGCGCAGCTCCTACTACAAATCCCTGCTGTCTGCC GAGGAGGCCGCCAAGCAGAAGAAGGAGAAGGTCTGGGCCCACTACGAGGAGCAGCCCGTG GAGGAGGTGGCGCCCATGCTGGAGGAGAAGGAGCGCTCGGCCAGCTACAAGCCAGTGTTT GTGACCGAGATCACCGACGACCTGCACTTCTACGTGCAGGACGTGGAGACAGGCACCCAG CTGGAGAAGCTAATGGAGAACATGCGCAATGACATCGCCAGCCACCCTCCCGTCGAGGGC TCCTACGCCCCGCGCCGCGGAGAATTCTGCATTGCCAAATTCGTGGACGGAGAATGGTAC CGGGCCCGCGTAGAGAAAGTCGAGTCTCCTGCCAAAGTGCACGTCTTCTACATCGACTAC GGCAACAGGGAGATCCTGCCATCCACCCGCCTGGGCACTCTGCCACCTGCCTTCAGCACC CGCGTGCTGCCAGCTCAAGCCACAGAGTACGCCTTCGCCTTCATCCAGGTTCCCCAGGAC GAGGACGCGCGAACAGACGCCGTGGATAGCGTGGTGCGGGACATCCAGAACACGCAGTGC CTGCTCAACGTGGAGCACCTGAGCGCCGGCTGCCCCCATGTCACCCTGCAGTTTGCCGAT TCCAAGGGGGACGTGGGGCTGGGCCTGGTGAAGGAGGGGCTGGTCATGGTGGAGGTGCGC AAGGAGAAGCAGTTCCAGAAGGTGATCACAGAGTACCTGAATGCCCAGGAGTCAGCCAAG AGCGCCAGGCTGAACCTGTGGCGCTACGGAGACTTCCGGGCCGATGACGCAGATGAGTTT GGCTACAGCCGCTAGAGAGGGGATCGGGTCTGGCCTCCAGCACTGCTCACGCCAGTACCT CTTCCTCTGCCGGGAGGATGTTTTCAGCTCCAGACCTCAAATCAGGGGCATAGATTGGGT CCAGCTTTGCTTCAGTGTATGGAAATGACTTGTGGAATGGCATCTGGGCTGGGGGTGGGG TCAGGGGCACCCAGGGCTCTCGGGGGGGTGGGGGCAGGGCATTGTCTTCCGCGGTCTCTC CCAGCTGATTTTGTTTTTATTTGGGGGTTTGCGGTGTGTTTGGTTTGGTTTTTTAATTGT CCTCAAATCAGGAAGAAACACGAAAGACTTTGTCATAATGGAGGGCATATCCTGGCACCC AAGGCCAGCTGCCAGTTGGCACCCCACTTCGACCCCAGACCGCCCTTCTCCCCAGCTCTC TGTCCAGCTGTTGATTATGTGATTTCTCTGATACGTCCATTCTCAAATGCCAGCGTGTCC ACATCTGCCCCTTTGCCAGCCTTCCCTGTTTCTGTATTTAAAGCTTTTTGAGACCCAATA AAATAGTACATG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 176-1231, - strand, RNAz p=0.999655 | |
| 184-1224, - strand, RNAz p=0.977764 | |
| 505-599, - strand, RNAz p=0.947507 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 176-1231, - strand, RNAz p=0.999655 | |
| 184-1224, - strand, RNAz p=0.977764 | |
| 505-599, - strand, RNAz p=0.947507 |
| Aligned organism(s): 61 entry(ies) | More info |
| Aligned organism(s): 61 entry(ies) | Help | Less info |
| 149-293, gnl|bosTau2|chr4 (50395820-50395676) | |
| 149-293, gnl|canFam2|chr14 (11231919-11231739) | |
| 149-293, gnl|danRer3|chr4 (20646294-20646141) | |
| 149-293, gnl|dasNov1|scaffold_19082 (15726-15891) | |
| 149-293, gnl|echTel1|scaffold_279790 (2640-2805) | |
| 149-293, gnl|hg17|chr7 (127315359-127315526) | |
| 149-293, gnl|Hg17|chr7 (127315361-127315505) | |
| 149-293, gnl|loxAfr1|scaffold_15621 (49776-49940) | |
| 149-293, gnl|mm7|chr6 (28812339-28812501) | |
| 149-293, gnl|Mm7|chr6 (28812341-28812485) | |
| 149-293, gnl|monDom2|scaffold_22 (16578198-16578041) | |
| 149-293, gnl|oryCun1|scaffold_213151 (161532-161698) | |
| 149-293, gnl|panTro1|chr6 (129731187-129731354) | |
| 149-293, gnl|rheMac2|chr3 (165630621-165630788) | |
| 149-293, gnl|rn3|chr4 (56003371-56003531) | |
| 149-293, gnl|tetNig1|chr19 (2088814-2088663) | |
| 149-293, gnl|xenTro1|scaffold_534 (72491-72324) | |
| 487-599, gnl|bosTau2|chr4 (50389967-50389855) | |
| 487-599, gnl|canFam2|chr14 (11226511-11226371) | |
| 487-599, gnl|danRer3|chr4 (20612520-20612398) | |
| 487-599, gnl|dasNov1|scaffold_19082 (21332-21471) | |
| 487-599, gnl|echTel1|scaffold_279790 (5896-6036) | |
| 487-599, gnl|hg17|chr7 (127320939-127321078) | |
| 487-599, gnl|Hg17|chr7 (127320941-127321053) | |
| 487-599, gnl|loxAfr1|scaffold_15621 (55098-55238) | |
| 487-599, gnl|mm7|chr6 (28817100-28817239) | |
| 487-599, gnl|Mm7|chr6 (28817102-28817214) | |
| 487-599, gnl|monDom2|scaffold_22 (16568736-16568597) | |
| 487-599, gnl|oryCun1|scaffold_213151 (167133-167263) | |
| 487-599, gnl|panTro1|chr6 (129736785-129736924) | |
| 487-599, gnl|rheMac2|chr3 (165636195-165636334) | |
| 487-599, gnl|rn3|chr4 (56008220-56008359) | |
| 487-599, gnl|tetNig1|chr19 (2079348-2079216) | |
| 601-804, gnl|bosTau2|chr4 (50389106-50388903) | |
| 601-804, gnl|canFam2|chr14 (11224896-11224668) | |
| 601-804, gnl|danRer3|chr4 (20608680-20608453) | |
| 601-804, gnl|dasNov1|scaffold_253899 (5-207) | |
| 601-804, gnl|fr1|chrUn (8457840-8458061) | |
| 601-804, gnl|hg17|chr7 (127323476-127323704) | |
| 601-804, gnl|Hg17|chr7 (127323492-127323695) | |
| 601-804, gnl|mm7|chr6 (28818545-28818772) | |
| 601-804, gnl|Mm7|chr6 (28818560-28818763) | |
| 601-804, gnl|monDom2|scaffold_22 (16568328-16568102) | |
| 601-804, gnl|oryCun1|scaffold_213151 (168574-168802) | |
| 601-804, gnl|panTro1|chr6 (129739687-129739915) | |
| 601-804, gnl|rheMac2|chr3 (165638937-165639165) | |
| 601-804, gnl|rn3|chr4 (56009578-56009805) | |
| 601-804, gnl|tetNig1|chr19 (2078215-2077994) | |
| 601-804, gnl|xenTro1|scaffold_534 (53253-53027) | |
| 1118-1452, gnl|bosTau2|chr4 (50386697-50386361) | |
| 1118-1452, gnl|canFam2|chr14 (11222812-11222393) | |
| 1118-1452, gnl|echTel1|scaffold_57206 (1300-1628) | |
| 1118-1452, gnl|hg17|chr7 (127326106-127326526) | |
| 1118-1452, gnl|Hg17|chr7 (127326272-127326587) | |
| 1118-1452, gnl|mm7|chr6 (28820488-28820897) | |
| 1118-1452, gnl|Mm7|chr6 (28820645-28820958) | |
| 1118-1452, gnl|monDom2|scaffold_22 (16565621-16565203) | |
| 1118-1452, gnl|oryCun1|scaffold_213151 (171202-171597) | |
| 1118-1452, gnl|panTro1|chr6 (129742320-129742738) | |
| 1118-1452, gnl|rheMac2|chr3 (165641643-165642058) | |
| 1118-1452, gnl|rn3|chr4 (56011542-56011948) |
| Aligned organism(s): 61 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 149-293, gnl|bosTau2|chr4 (50395820-50395676) | |
| 149-293, gnl|canFam2|chr14 (11231919-11231739) | |
| 149-293, gnl|danRer3|chr4 (20646294-20646141) | |
| 149-293, gnl|dasNov1|scaffold_19082 (15726-15891) | |
| 149-293, gnl|echTel1|scaffold_279790 (2640-2805) | |
| 149-293, gnl|hg17|chr7 (127315359-127315526) | |
| 149-293, gnl|Hg17|chr7 (127315361-127315505) | |
| 149-293, gnl|loxAfr1|scaffold_15621 (49776-49940) | |
| 149-293, gnl|mm7|chr6 (28812339-28812501) | |
| 149-293, gnl|Mm7|chr6 (28812341-28812485) | |
| 149-293, gnl|monDom2|scaffold_22 (16578198-16578041) | |
| 149-293, gnl|oryCun1|scaffold_213151 (161532-161698) | |
| 149-293, gnl|panTro1|chr6 (129731187-129731354) | |
| 149-293, gnl|rheMac2|chr3 (165630621-165630788) | |
| 149-293, gnl|rn3|chr4 (56003371-56003531) | |
| 149-293, gnl|tetNig1|chr19 (2088814-2088663) | |
| 149-293, gnl|xenTro1|scaffold_534 (72491-72324) | |
| 487-599, gnl|bosTau2|chr4 (50389967-50389855) | |
| 487-599, gnl|canFam2|chr14 (11226511-11226371) | |
| 487-599, gnl|danRer3|chr4 (20612520-20612398) | |
| 487-599, gnl|dasNov1|scaffold_19082 (21332-21471) | |
| 487-599, gnl|echTel1|scaffold_279790 (5896-6036) | |
| 487-599, gnl|hg17|chr7 (127320939-127321078) | |
| 487-599, gnl|Hg17|chr7 (127320941-127321053) | |
| 487-599, gnl|loxAfr1|scaffold_15621 (55098-55238) | |
| 487-599, gnl|mm7|chr6 (28817100-28817239) | |
| 487-599, gnl|Mm7|chr6 (28817102-28817214) | |
| 487-599, gnl|monDom2|scaffold_22 (16568736-16568597) | |
| 487-599, gnl|oryCun1|scaffold_213151 (167133-167263) | |
| 487-599, gnl|panTro1|chr6 (129736785-129736924) | |
| 487-599, gnl|rheMac2|chr3 (165636195-165636334) | |
| 487-599, gnl|rn3|chr4 (56008220-56008359) | |
| 487-599, gnl|tetNig1|chr19 (2079348-2079216) | |
| 601-804, gnl|bosTau2|chr4 (50389106-50388903) | |
| 601-804, gnl|canFam2|chr14 (11224896-11224668) | |
| 601-804, gnl|danRer3|chr4 (20608680-20608453) | |
| 601-804, gnl|dasNov1|scaffold_253899 (5-207) | |
| 601-804, gnl|fr1|chrUn (8457840-8458061) | |
| 601-804, gnl|hg17|chr7 (127323476-127323704) | |
| 601-804, gnl|Hg17|chr7 (127323492-127323695) | |
| 601-804, gnl|mm7|chr6 (28818545-28818772) | |
| 601-804, gnl|Mm7|chr6 (28818560-28818763) | |
| 601-804, gnl|monDom2|scaffold_22 (16568328-16568102) | |
| 601-804, gnl|oryCun1|scaffold_213151 (168574-168802) | |
| 601-804, gnl|panTro1|chr6 (129739687-129739915) | |
| 601-804, gnl|rheMac2|chr3 (165638937-165639165) | |
| 601-804, gnl|rn3|chr4 (56009578-56009805) | |
| 601-804, gnl|tetNig1|chr19 (2078215-2077994) | |
| 601-804, gnl|xenTro1|scaffold_534 (53253-53027) | |
| 1118-1452, gnl|bosTau2|chr4 (50386697-50386361) | |
| 1118-1452, gnl|canFam2|chr14 (11222812-11222393) | |
| 1118-1452, gnl|echTel1|scaffold_57206 (1300-1628) | |
| 1118-1452, gnl|hg17|chr7 (127326106-127326526) | |
| 1118-1452, gnl|Hg17|chr7 (127326272-127326587) | |
| 1118-1452, gnl|mm7|chr6 (28820488-28820897) | |
| 1118-1452, gnl|Mm7|chr6 (28820645-28820958) | |
| 1118-1452, gnl|monDom2|scaffold_22 (16565621-16565203) | |
| 1118-1452, gnl|oryCun1|scaffold_213151 (171202-171597) | |
| 1118-1452, gnl|panTro1|chr6 (129742320-129742738) | |
| 1118-1452, gnl|rheMac2|chr3 (165641643-165642058) | |
| 1118-1452, gnl|rn3|chr4 (56011542-56011948) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| amn (0.835422) | |
| fce (0.543183) | |
| elu (0.385356) | |
| fty (0.351679) | |
| lnt (0.284616) | |
| cov (0.264306) | |
| cly (0.241284) | |
| nlu (0.191681) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| eye (0.170503) | |
| nje (0.16592) | |
| pty (0.142714) | |
| ese (0.126502) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| jej (0.0989218) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.835422) | |
| fce (0.543183) | |
| elu (0.385356) | |
| fty (0.351679) | |
| lnt (0.284616) | |
| cov (0.264306) | |
| cly (0.241284) | |
| nlu (0.191681) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| eye (0.170503) | |
| nje (0.16592) | |
| pty (0.142714) | |
| ese (0.126502) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| jej (0.0989218) |