Ss1.1-Pig4-TMW8054C01.3.5
|
AACGCGGAAGGACCCGGCGAGCCCGGCGGCCGAGTGCTGAGCGGCTCCCCTTCGCGAGGC
AGCGGGATCCGCCGAGCGCCCGAGTGCCCAGCCCCGCCGGCGCGATGGAGGCGCCGCTGC
TGTGGTTCTGCAACTACAGCGCGCTGGGCGTGAGCGCTGCGCTCAAGCTGCCGCAGATCT
CGTCGGTGCTGAGGGCGCAGAGCGCGAGGGGCATCAGCCTTCCGAGCCTCCTTCTGGAGC
TGGCGGGGTTCCTGGTCTTTCTCCGGTACCAGAGTTACTACGAGTACCCGCTGCTGACTT
ACCTGGAGTACCCCATCCTCTTGACACAAGATCTCGTCCTCCTGCTGTGCATCTTCCACT
TCAGCGGGCATGTGGAGCGGGCTGCGTTCTACATCGCCCTCTTTGTGTCTGCTTGGTTCG
TCCTCAGCCTGCGGAAGTGGATCATGGATCTGGCCATGAACTTCTGTACATTCATCAGCG
CAGCCAGTAAGTTTGCGCAGCTCCAGTACCTATGGAAGACCAGGGACTCGGGAGCCGTGA
GTGCCCTGACGTGGAGCCTCGCTTCGTACAGCTGCGCAGTAAGAATAATAACGACGCTAA
TGACCACCAATGATCTTACAATTCTTACGCGTTTTGTGGTCACGCTGGCTTTAAATATAT
GGGTAACAGCTACAATCCTTCGCTACCGGAAGACTGCTGTCAAGGCTGAGTGATGGACAC
GGAATAGTCCTACAGAGTGGATTTTGAATAACTGAACCAAAGGCAAAAAGCTCATTGCTA
AACCAGGTCTTTTATAAATTCAGCCAGCCGTGCCAAAGGTATTTTAGACTTGAAAGAGCC
CACTTACACCCTTGTCTAAACATGTCAATTTTTAACCCCCCCGCCACCTCAGTAGGTTAA
AGTAGGCTCAGAGTATCTGCAGTTTTGAGAAGGCTGGTGGTAGCTGGTCTTGCAGGAGCC
CCATTTCGAGGCGACAGCTTTGACCCTTATCACTCAAGTCACAGTTCTCTCCAAAAAACT
ACATACATCTACTTTGCAGCATTCGGAATCTTGTAGGAAATAAACCCCCTCCACAACCCA
AATGAGCATGAATAGGAGTTTGCTCAGTGTGGGATTGTGATAAGTGACCAGGGTTTGCTT
CCCGGGACTAATGTTTAACTGCCCTATAGATGTAACAGGACGGCCTTGTTGGATGTTACT
GCATGATAGCTCCTTAAGCTATAGCAAGGACGTCAAGACCAGCAAAAATGTAACTGGCTT
GAGTTCATGTACCAAAGCACGTCTTCAACTTCACACTGTGCCTTTAAATGATGCCTAACA
AAAGGTGCCTGCAGTCTCTGCTTGTGATGAGGTGACCCCACTATACTGACGCCAGCACCA
GGTTTATGCTGCCGTTTTTAAAAGGACCACACCTACACAGTTACTGTTATTAGAATTTGG
CACAAAATACAGCTGGCCTCCACCAGGCTTTGCCTATTGAAAATATATGCAGTAAAGGGT
ATTGCTGAGTTCTGACAAGTTCGTATGGATTTTATTCTCATTATAGTATCACAGTCTAAA
CATGATAAAATTATTGTAAGATTTCTTACATTTTTCCTGTAAAAAAGCTTATAAACCCTA
ACACTGAAAACTCTGGTTCCCCTAATAATTGAATGGCATTATTTTATTATATGCAGTAAG
TGGTTTATTAGAAAATATTTTAGTTTCTTGTGTACAATAAACTATCATATTTTGAACTCT
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AACGCGGAAGGACCCGGCGAGCCCGGCGGCCGAGTGCTGAGCGGCTCCCCTTCGCGAGGC
AGCGGGATCCGCCGAGCGCCCGAGTGCCCAGCCCCGCCGGCGCGATGGAGGCGCCGCTGC
TGTGGTTCTGCAACTACAGCGCGCTGGGCGTGAGCGCTGCGCTCAAGCTGCCGCAGATCT
CGTCGGTGCTGAGGGCGCAGAGCGCGAGGGGCATCAGCCTTCCGAGCCTCCTTCTGGAGC
TGGCGGGGTTCCTGGTCTTTCTCCGGTACCAGAGTTACTACGAGTACCCGCTGCTGACTT
ACCTGGAGTACCCCATCCTCTTGACACAAGATCTCGTCCTCCTGCTGTGCATCTTCCACT
TCAGCGGGCATGTGGAGCGGGCTGCGTTCTACATCGCCCTCTTTGTGTCTGCTTGGTTCG
TCCTCAGCCTGCGGAAGTGGATCATGGATCTGGCCATGAACTTCTGTACATTCATCAGCG
CAGCCAGTAAGTTTGCGCAGCTCCAGTACCTATGGAAGACCAGGGACTCGGGAGCCGTGA
GTGCCCTGACGTGGAGCCTCGCTTCGTACAGCTGCGCAGTAAGAATAATAACGACGCTAA
TGACCACCAATGATCTTACAATTCTTACGCGTTTTGTGGTCACGCTGGCTTTAAATATAT
GGGTAACAGCTACAATCCTTCGCTACCGGAAGACTGCTGTCAAGGCTGAGTGATGGACAC
GGAATAGTCCTACAGAGTGGATTTTGAATAACTGAACCAAAGGCAAAAAGCTCATTGCTA
AACCAGGTCTTTTATAAATTCAGCCAGCCGTGCCAAAGGTATTTTAGACTTGAAAGAGCC
CACTTACACCCTTGTCTAAACATGTCAATTTTTAACCCCCCCGCCACCTCAGTAGGTTAA
AGTAGGCTCAGAGTATCTGCAGTTTTGAGAAGGCTGGTGGTAGCTGGTCTTGCAGGAGCC
CCATTTCGAGGCGACAGCTTTGACCCTTATCACTCAAGTCACAGTTCTCTCCAAAAAACT
ACATACATCTACTTTGCAGCATTCGGAATCTTGTAGGAAATAAACCCCCTCCACAACCCA
AATGAGCATGAATAGGAGTTTGCTCAGTGTGGGATTGTGATAAGTGACCAGGGTTTGCTT
CCCGGGACTAATGTTTAACTGCCCTATAGATGTAACAGGACGGCCTTGTTGGATGTTACT
GCATGATAGCTCCTTAAGCTATAGCAAGGACGTCAAGACCAGCAAAAATGTAACTGGCTT
GAGTTCATGTACCAAAGCACGTCTTCAACTTCACACTGTGCCTTTAAATGATGCCTAACA
AAAGGTGCCTGCAGTCTCTGCTTGTGATGAGGTGACCCCACTATACTGACGCCAGCACCA
GGTTTATGCTGCCGTTTTTAAAAGGACCACACCTACACAGTTACTGTTATTAGAATTTGG
CACAAAATACAGCTGGCCTCCACCAGGCTTTGCCTATTGAAAATATATGCAGTAAAGGGT
ATTGCTGAGTTCTGACAAGTTCGTATGGATTTTATTCTCATTATAGTATCACAGTCTAAA
CATGATAAAATTATTGTAAGATTTCTTACATTTTTCCTGTAAAAAAGCTTATAAACCCTA
ACACTGAAAACTCTGGTTCCCCTAATAATTGAATGGCATTATTTTATTATATGCAGTAAG
TGGTTTATTAGAAAATATTTTAGTTTCTTGTGTACAATAAACTATCATATTTTGAACTCT
AAAAAAAAAAAA
|
|
gi|55594640|ref|XP_515301.1| |
Protein identifier
|
gi|55594640|ref|XP_515301.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-249, gnl|bosTau2|chr11 (65402703-65402461) |
|
1-249, gnl|Hg17|chr2 (11246183-11246415) |
|
1-249, gnl|Mm7|chr12 (17054630-17054397) |
| |
|
458-585, gnl|bosTau2|chr11 (65393464-65393336) |
|
458-585, gnl|canFam2|chr17 (10898196-10898331) |
|
458-585, gnl|dasNov1|scaffold_32039 (2112-2260) |
|
458-585, gnl|echTel1|scaffold_255261 (5425-5573) |
|
458-585, gnl|fr1|chrUn (263017510-263017638) |
|
458-585, gnl|galGal2|chr3 (95419058-95419209) |
|
458-585, gnl|hg17|chr2 (11262627-11262775) |
|
458-585, gnl|Hg17|chr2 (11262648-11262776) |
|
458-585, gnl|mm7|chr12 (17048178-17048034) |
|
458-585, gnl|Mm7|chr12 (17048159-17048031) |
|
458-585, gnl|monDom2|scaffold_1 (97065892-97065744) |
|
458-585, gnl|oryCun1|scaffold_59694 (1019-872) |
|
458-585, gnl|panTro1|chr12 (11979954-11980102) |
|
458-585, gnl|rheMac2|chr13 (11250693-11250841) |
|
458-585, gnl|rn3|chr6 (40684039-40683892) |
|
458-585, gnl|tetNig1|chr10 (1214689-1214561) |
| |
|
616-990, gnl|bosTau2|chr11 (65390863-65390489) |
|
616-990, gnl|Hg17|chr2 (11268455-11268849) |
| |
|
1017-1740, gnl|bosTau2|chr11 (65390482-65389787) |
|
1017-1740, gnl|Hg17|chr2 (11268856-11269584) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-249, gnl|bosTau2|chr11 (65402703-65402461) |
|
1-249, gnl|Hg17|chr2 (11246183-11246415) |
|
1-249, gnl|Mm7|chr12 (17054630-17054397) |
| |
|
458-585, gnl|bosTau2|chr11 (65393464-65393336) |
|
458-585, gnl|canFam2|chr17 (10898196-10898331) |
|
458-585, gnl|dasNov1|scaffold_32039 (2112-2260) |
|
458-585, gnl|echTel1|scaffold_255261 (5425-5573) |
|
458-585, gnl|fr1|chrUn (263017510-263017638) |
|
458-585, gnl|galGal2|chr3 (95419058-95419209) |
|
458-585, gnl|hg17|chr2 (11262627-11262775) |
|
458-585, gnl|Hg17|chr2 (11262648-11262776) |
|
458-585, gnl|mm7|chr12 (17048178-17048034) |
|
458-585, gnl|Mm7|chr12 (17048159-17048031) |
|
458-585, gnl|monDom2|scaffold_1 (97065892-97065744) |
|
458-585, gnl|oryCun1|scaffold_59694 (1019-872) |
|
458-585, gnl|panTro1|chr12 (11979954-11980102) |
|
458-585, gnl|rheMac2|chr13 (11250693-11250841) |
|
458-585, gnl|rn3|chr6 (40684039-40683892) |
|
458-585, gnl|tetNig1|chr10 (1214689-1214561) |
| |
|
616-990, gnl|bosTau2|chr11 (65390863-65390489) |
|
616-990, gnl|Hg17|chr2 (11268455-11268849) |
| |
|
1017-1740, gnl|bosTau2|chr11 (65390482-65389787) |
|
1017-1740, gnl|Hg17|chr2 (11268856-11269584) |
|
nlu (0.383362) |
|
cmu (0.372787) |
|
cbl (0.344392) |
|
pla (0.267344) |
|
rec (0.17307) |
|
cli (0.152812) |
|
lin (0.145603) |
|
nca (0.136874) |
|
nmm (0.132802) |
|
bla (0.124347) |
|
tra (0.123092) |
|
eru (0.120048) |
|
cty (0.10408) |
|
nlu (0.383362) |
|
cmu (0.372787) |
|
cbl (0.344392) |
|
pla (0.267344) |
|
rec (0.17307) |
|
cli (0.152812) |
|
lin (0.145603) |
|
nca (0.136874) |
|
nmm (0.132802) |
|
bla (0.124347) |
|
tra (0.123092) |
|
eru (0.120048) |
|
cty (0.10408) |
