Non-Coding RNA Search

Ss1.1-Pig4-TMW8054C11.3

Sequence:


               
               GTGGCGGAGTAGAAATAAATGGAATACCTTCAGTTTTCAGAGCGCGCGCTCGGGGAGGAA
GGGAGACCCGGAGCGTGCTCCGAGTTGCCGTGACAGTGCCAGGAGGGGGTCTGTGCTCAG
GCCCCCCAGGAGCCCGACTTCACATCCAGGCGCCATTGGCATCGATTCTTCCGTGTTCCT
GGTGCCTGAGCATGAAGGGACCGGCTCTTAATGCAGCTCTGGGCTCCCTCTGTTCTCAGC
CTGCCCCTTCTCCAGTGGGCCAGCCTTGGCGTTACCTGTAGAAGTAACTTCTGGAGTTAG
GACCTAGTCACTTTACTTTCTAAGTTTAAAAGATTCCAATTGCTCTAGTGAATGAGGCTT
TAGGGGGCTGCGACCCAGCCATGCCTCGCTGCCTGTCCGTCCCTTTGCATGCAGTATTTT
CACGCTGTGTTTGATGACTGCCTCTTGTTTACCCTCTGGAAACCCTGGGATGACTGAGGT
TTGGGGAAGCTACCTGAGATCACTTCCTGGCAAGTGACAGCTATTGAGCAGTTGTTAGAA
AGAGATGGGGATTTGGCCCATTGGCGCCTTCCAGCCCGAATTAGCTCTGGTGCAGGGTCC
ATGTTCCTTGTCAGTCCAACCCAAAGTCAGATGGTTTGGACGCTCGTTTGAAATCGTGAC
CACTCACAACACCCAGCCTGCCCGAGGTTGGGGAGTTTTACACTACTCTCATTTAAAGGT
GAAAATTAGATACTACAGCATTAATATTAATGAGGTGCATAACTAAGAATCTGTGGAGCA
TGCTGAGAGTTATAATGGTTGGTTTTCTGGTTTGATTTTCTTTTTTTGTTAGAGTAACAT
CGAAGCCAAGAAAGATGGTTTTACCTTTACTGACCCAATGTAAATATGTATCTAGACTGT
TTTTAAATGTGTTTCTTCATGAATGCTTCATTTGGCTCCAGGAAGCCTGTGTCACCTGTG
TAAGTTGGTATTTGGGCACTTTATATTTTTCTAAAAACGTGTTTTGGATCCTGTACTCTA
ATAAATCATAAGTTTCTTTTTAAAACTTTTCCAAACATTTTCTCCACTTTAAAAACCCTG
TTATAAAAGTAGAACTTTCACAATGTTGAAATATTAACTATTTGGATATAGTAACTTCTT
TTCTCTTCAAATGAATGCCAAGATTTTTTTGTACAATGATTAATAAATGGAACTTATCCA
GAGAAACCACAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGCGGAGTAGAAATAAATGGAATACCTTCAGTTTTCAGAGCGCGCGCTCGGGGAGGAA
GGGAGACCCGGAGCGTGCTCCGAGTTGCCGTGACAGTGCCAGGAGGGGGTCTGTGCTCAG
GCCCCCCAGGAGCCCGACTTCACATCCAGGCGCCATTGGCATCGATTCTTCCGTGTTCCT
GGTGCCTGAGCATGAAGGGACCGGCTCTTAATGCAGCTCTGGGCTCCCTCTGTTCTCAGC
CTGCCCCTTCTCCAGTGGGCCAGCCTTGGCGTTACCTGTAGAAGTAACTTCTGGAGTTAG
GACCTAGTCACTTTACTTTCTAAGTTTAAAAGATTCCAATTGCTCTAGTGAATGAGGCTT
TAGGGGGCTGCGACCCAGCCATGCCTCGCTGCCTGTCCGTCCCTTTGCATGCAGTATTTT
CACGCTGTGTTTGATGACTGCCTCTTGTTTACCCTCTGGAAACCCTGGGATGACTGAGGT
TTGGGGAAGCTACCTGAGATCACTTCCTGGCAAGTGACAGCTATTGAGCAGTTGTTAGAA
AGAGATGGGGATTTGGCCCATTGGCGCCTTCCAGCCCGAATTAGCTCTGGTGCAGGGTCC
ATGTTCCTTGTCAGTCCAACCCAAAGTCAGATGGTTTGGACGCTCGTTTGAAATCGTGAC
CACTCACAACACCCAGCCTGCCCGAGGTTGGGGAGTTTTACACTACTCTCATTTAAAGGT
GAAAATTAGATACTACAGCATTAATATTAATGAGGTGCATAACTAAGAATCTGTGGAGCA
TGCTGAGAGTTATAATGGTTGGTTTTCTGGTTTGATTTTCTTTTTTTGTTAGAGTAACAT
CGAAGCCAAGAAAGATGGTTTTACCTTTACTGACCCAATGTAAATATGTATCTAGACTGT
TTTTAAATGTGTTTCTTCATGAATGCTTCATTTGGCTCCAGGAAGCCTGTGTCACCTGTG
TAAGTTGGTATTTGGGCACTTTATATTTTTCTAAAAACGTGTTTTGGATCCTGTACTCTA
ATAAATCATAAGTTTCTTTTTAAAACTTTTCCAAACATTTTCTCCACTTTAAAAACCCTG
TTATAAAAGTAGAACTTTCACAATGTTGAAATATTAACTATTTGGATATAGTAACTTCTT
TTCTCTTCAAATGAATGCCAAGATTTTTTTGTACAATGATTAATAAATGGAACTTATCCA
GAGAAACCACAC

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               1-1212, gnl|bosTau2|chr17 (33237352-33238576)
               

               
               1-1212, gnl|Hg17|chr12 (116045520-116044302)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1212, gnl|bosTau2|chr17 (33237352-33238576)
               

               
               1-1212, gnl|Hg17|chr12 (116045520-116044302)

Expressed library(ies): 19 entry(ies)

More info

Expressed library(ies): 19 entry(ies)

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               rec (0.692281)
               

               
               vin (0.332557)
               

               
               cki (0.330469)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               cut (0.169924)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.692281)
               

               
               vin (0.332557)
               

               
               cki (0.330469)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               cut (0.169924)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	1-1212, gnl\|bosTau2\|chr17 (33237352-33238576)
	1-1212, gnl\|Hg17\|chr12 (116045520-116044302)

	rec (0.692281)
	vin (0.332557)
	cki (0.330469)
	fcc (0.197785)
	sag (0.182715)
	cut (0.169924)
	fco (0.157208)
	isp (0.150376)
	bfe (0.149858)
	spl (0.143184)
	cst (0.140036)
	pla (0.133672)
	nmm (0.132802)
	ova (0.129132)
	ret (0.128733)
	sug (0.127291)
	jca (0.11396)
	cty (0.10408)
	jej (0.0989218)