Non-Coding RNA Search

Ss1.1-Pig4-TMW8054C12.5

Sequence:


               
               TCAAAATCAGCTCGGACTTGAAAAGGCACATGCGCGTGCACTCGGGGGAGAAGCCTTTCA
AGTGCGAGTTCTGCAATGTCCGCTGCACCATGAAGGGGAACCTCAAGTCGCACATCCGTA
TCAAGCACAGTGGGAACAACTTCAAGTGTCCGCATTGCGACTTCCTGGGGGACAGCAAGG
CCACGCTGCGCAAGCACAGCCGGGTGCACCAGTCCGAGCACCCCGAGAAGTGCTCCGAGT
GCAGCTACTCCTGCTCCAGCAAGGCCGCCCTGCGCATCCACGAGCGCATCCACTGCACCG
ACCGCCCCTTCAAGTGCAATTACTGCAGCTTCGACACCAAGCAGCCCAGCAACCTGAGCA
AGCACATGAAGAAGTTCCACGGGGACATGGTCAAGACCGAGGCCTTGGAGAGAAAGGACG
CGGGCCGGCAGAGTAGCCGCCAGGTGGCCAAGCTGGACGCCAAGAAGACTTTCCACTGCG
ATCGGTGCGATGCCTCGTTCATGCGCGAGGACTCGCTCCGCAGCCACAAGCGGCAGCACA
GTGAGTACAGCGAGAATAAGAGCTCGGACGTGACCGTCCTGCAGTTTCAGATCGACCCCA
GCAAACAGCCCGCCGCGCCCCTCGCGGTGGGGCATCTTCAGGTGCCCCTCCAGCCCAGCC
AAGTGCCCCAATTCAGCGAGGGCAGAGTCAAAATCATCGTGGGGCACCAAGTGCCCCAGG
CAAACACCATCGTCCAGGCTGCGGCCGCCGCAGTGAACATTGTGCAGCCCGCCCTGGTGG
CGCAGAACCCAGAGGAACTGCCGGGGAACAGCCGGCTGCAGATCTTGCGCCAGGTCAACC
TGATCGCCCCGCCACAGACCTCGGGGTGTCCCAGCGAGGCGGCCGCGATGCCCCAGCCGG
CCGTCCTGCTGACCACCCACGACCAGCCGGATGGAGCCACTCTGCACCAGACTCTCATCC
CCACGGCCCCGGGCGGCCCCCAGGAAGGCTCTGGCAACCAGGCTTTCATCACCAGTTCAG
GCATCACTTGCACTGACTTCGAAGGCCTGAACGCTCTGATTCAGGAGGGGACCACTGAGG
TGACCGTGGTCAGCGACGGAGGCCAGAACATTGCCGTGGCCACCACGGCCCCGCCCATAT
TCTCCACCTCCCAGCAGGAGTTACCCAAGCAGACCTACTCCATCATCCAGGGAGGCGCCC
ACCCAGCTTTGCTCTGTCCGGCGGATTCTATACCAGACTAGGGTGTACGAAACAAAAGAA
AGGGAGGGCAAGGAGGGACAAAAAAAAAAAAGTCAGAACTAGAATTCTGTAAGAGGTTTG
CCTTTCGTGTTTTCAAGGATTGTTGTGAAAACACCCCGCCCCATAATAAATCGTAATTTT
ATACAGCTTCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAAAATCAGCTCGGACTTGAAAAGGCACATGCGCGTGCACTCGGGGGAGAAGCCTTTCA
AGTGCGAGTTCTGCAATGTCCGCTGCACCATGAAGGGGAACCTCAAGTCGCACATCCGTA
TCAAGCACAGTGGGAACAACTTCAAGTGTCCGCATTGCGACTTCCTGGGGGACAGCAAGG
CCACGCTGCGCAAGCACAGCCGGGTGCACCAGTCCGAGCACCCCGAGAAGTGCTCCGAGT
GCAGCTACTCCTGCTCCAGCAAGGCCGCCCTGCGCATCCACGAGCGCATCCACTGCACCG
ACCGCCCCTTCAAGTGCAATTACTGCAGCTTCGACACCAAGCAGCCCAGCAACCTGAGCA
AGCACATGAAGAAGTTCCACGGGGACATGGTCAAGACCGAGGCCTTGGAGAGAAAGGACG
CGGGCCGGCAGAGTAGCCGCCAGGTGGCCAAGCTGGACGCCAAGAAGACTTTCCACTGCG
ATCGGTGCGATGCCTCGTTCATGCGCGAGGACTCGCTCCGCAGCCACAAGCGGCAGCACA
GTGAGTACAGCGAGAATAAGAGCTCGGACGTGACCGTCCTGCAGTTTCAGATCGACCCCA
GCAAACAGCCCGCCGCGCCCCTCGCGGTGGGGCATCTTCAGGTGCCCCTCCAGCCCAGCC
AAGTGCCCCAATTCAGCGAGGGCAGAGTCAAAATCATCGTGGGGCACCAAGTGCCCCAGG
CAAACACCATCGTCCAGGCTGCGGCCGCCGCAGTGAACATTGTGCAGCCCGCCCTGGTGG
CGCAGAACCCAGAGGAACTGCCGGGGAACAGCCGGCTGCAGATCTTGCGCCAGGTCAACC
TGATCGCCCCGCCACAGACCTCGGGGTGTCCCAGCGAGGCGGCCGCGATGCCCCAGCCGG
CCGTCCTGCTGACCACCCACGACCAGCCGGATGGAGCCACTCTGCACCAGACTCTCATCC
CCACGGCCCCGGGCGGCCCCCAGGAAGGCTCTGGCAACCAGGCTTTCATCACCAGTTCAG
GCATCACTTGCACTGACTTCGAAGGCCTGAACGCTCTGATTCAGGAGGGGACCACTGAGG
TGACCGTGGTCAGCGACGGAGGCCAGAACATTGCCGTGGCCACCACGGCCCCGCCCATAT
TCTCCACCTCCCAGCAGGAGTTACCCAAGCAGACCTACTCCATCATCCAGGGAGGCGCCC
ACCCAGCTTTGCTCTGTCCGGCGGATTCTATACCAGACTAGGGTGTACGAAACAAAAGAA
AGGGAGGGCAAGGAGGGACAAAAAAAAAAAAGTCAGAACTAGAATTCTGTAAGAGGTTTG
CCTTTCGTGTTTTCAAGGATTGTTGTGAAAACACCCCGCCCCATAATAAATCGTAATTTT
ATACAGCTTCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61810613|ref|XP_584272.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61810613|ref|XP_584272.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1388, gnl|bosTau2|chr3 (63437361-63438744)
               

               
               1-1388, gnl|Hg17|chr20 (50203335-50201640)
               

               
               1-1388, gnl|Mm7|chr2 (168719548-168718222)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1388, gnl|bosTau2|chr3 (63437361-63438744)
               

               
               1-1388, gnl|Hg17|chr20 (50203335-50201640)
               

               
               1-1388, gnl|Mm7|chr2 (168719548-168718222)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eli (0.151814)
               

               
               ute (0.132784)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eli (0.151814)
               

               
               ute (0.132784)

	1-1388, gnl\|bosTau2\|chr3 (63437361-63438744)
	1-1388, gnl\|Hg17\|chr20 (50203335-50201640)
	1-1388, gnl\|Mm7\|chr2 (168719548-168718222)