Ss1.1-Pig4-TMW8054C23.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGTAAAAGAGAAATACTCACCACACCAAATCATTTCATTACACCCTCAAAAGCTAGAAAC CAGTGCCTAAAAGAAACTCCAATTAAAATGCCAGAAAATTCAGCAGGAACAGAGAAGTTA GTAACAGGTGTCATAAGCCCTGAGAGGCGGTGTCGCTCAGTGGAACTCAATCTCAACCAA GCACATGTAGAGGACACTCCAAAAAGGAAGGGAACCAAAGTGTTTGGGAGCCTTGAGAAG GGCTTGGATAAGGTGATCACTGTGCTTACCAGGAGCAAGAAGAAGGGCTCTGCCAGAGAC GGGCCAAGAAGACTAAAGCCTCACTATAATGTGACTACAACCAGATTAGTGAATCCAGAT CAACTCTTGAATGAAATAATGTCTATTCTTCCAAAGAAGCATGTTGACTTTGTACAAAAG GGCTATACACTGAAGTGTCAAACCCAGTCAGATTTTGGCAAAGTGACAATGCAGTTTGAA CTAGAAGTGTGCCAGCTTCAAAAACCTGATGTGGTGGGTATCAGGAGGCAGAGGCTTAAG GGTGATGCCTGGGTTTACAAGAGATTAGTGGAAGACATCCTATCTAGCTGCAAGGTTTAA TTGATAGATGGTTTCCATCTTGCCTGATGAGCATGGGTGCGATACAGCCTACGTGGAGCC TGGTGTGATTGGTTTGATTTTAAAAGTCCACTGGAACTACACTCGTTTCTAAAGGGCTAT CCTAAAGACCAATATTTTTTGCTTGTTTGTTTTTAAACAAAAGATACTTTTTGTGGATGA ATCTAAGCCAAGACTATCTGCCGTTATCTGTAACTGTCTTTTTAAGTAATATGCTTTGTA TAATAATAACCATTGACTTTCTTAGATTCACTTCCATACATGAATGTAAGCTCTTAACTG TTTCTCCTTTTATTTGTAATTTCTTTCTGAAATAAAACCATTCATGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGTAAAAGAGAAATACTCACCACACCAAATCATTTCATTACACCCTCAAAAGCTAGAAAC CAGTGCCTAAAAGAAACTCCAATTAAAATGCCAGAAAATTCAGCAGGAACAGAGAAGTTA GTAACAGGTGTCATAAGCCCTGAGAGGCGGTGTCGCTCAGTGGAACTCAATCTCAACCAA GCACATGTAGAGGACACTCCAAAAAGGAAGGGAACCAAAGTGTTTGGGAGCCTTGAGAAG GGCTTGGATAAGGTGATCACTGTGCTTACCAGGAGCAAGAAGAAGGGCTCTGCCAGAGAC GGGCCAAGAAGACTAAAGCCTCACTATAATGTGACTACAACCAGATTAGTGAATCCAGAT CAACTCTTGAATGAAATAATGTCTATTCTTCCAAAGAAGCATGTTGACTTTGTACAAAAG GGCTATACACTGAAGTGTCAAACCCAGTCAGATTTTGGCAAAGTGACAATGCAGTTTGAA CTAGAAGTGTGCCAGCTTCAAAAACCTGATGTGGTGGGTATCAGGAGGCAGAGGCTTAAG GGTGATGCCTGGGTTTACAAGAGATTAGTGGAAGACATCCTATCTAGCTGCAAGGTTTAA TTGATAGATGGTTTCCATCTTGCCTGATGAGCATGGGTGCGATACAGCCTACGTGGAGCC TGGTGTGATTGGTTTGATTTTAAAAGTCCACTGGAACTACACTCGTTTCTAAAGGGCTAT CCTAAAGACCAATATTTTTTGCTTGTTTGTTTTTAAACAAAAGATACTTTTTGTGGATGA ATCTAAGCCAAGACTATCTGCCGTTATCTGTAACTGTCTTTTTAAGTAATATGCTTTGTA TAATAATAACCATTGACTTTCTTAGATTCACTTCCATACATGAATGTAAGCTCTTAACTG TTTCTCCTTTTATTTGTAATTTCTTTCTGAAATAAAACCATTCATGAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 149-318, + strand, RNAz p=0.904882 | |
| 217-318, + strand, RNAz p=0.713292 | |
| 422-620, + strand, RNAz p=0.686989 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 149-318, + strand, RNAz p=0.904882 | |
| 217-318, + strand, RNAz p=0.713292 | |
| 422-620, + strand, RNAz p=0.686989 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_014791, + |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 149-318, gnl|bosTau2|chr8 (29490752-29490921) | |
| 149-318, gnl|canFam2|chr11 (56085047-56085271) | |
| 149-318, gnl|danRer3|chr1 (19275452-19275260) | |
| 149-318, gnl|dasNov1|scaffold_48237 (2012-1805) | |
| 149-318, gnl|echTel1|scaffold_280990 (63875-63676) | |
| 149-318, gnl|fr1|chrUn (17032292-17032129) | |
| 149-318, gnl|galGal2|chr2 (147564049-147563841) | |
| 149-318, gnl|hg17|chr9 (36660976-36661193) | |
| 149-318, gnl|Hg17|chr9 (36660994-36661163) | |
| 149-318, gnl|loxAfr1|scaffold_96374 (5443-5656) | |
| 149-318, gnl|mm7|chr4 (44364743-44364951) | |
| 149-318, gnl|Mm7|chr4 (44364755-44364924) | |
| 149-318, gnl|monDom2|scaffold_19 (8827510-8827700) | |
| 149-318, gnl|oryCun1|scaffold_116985 (12973-13181) | |
| 149-318, gnl|panTro1|chr11 (37272247-37272464) | |
| 149-318, gnl|rheMac2|chr15 (40760977-40760763) | |
| 149-318, gnl|rn3|chr5 (60841940-60842148) | |
| 149-318, gnl|tetNig1|chr18 (84638-84473) | |
| 149-318, gnl|xenTro1|scaffold_495 (551319-551128) | |
| 422-948, gnl|bosTau2|chr8 (29496892-29497417) | |
| 422-948, gnl|Hg17|chr9 (36667156-36667675) | |
| 422-948, gnl|Mm7|chr4 (44377523-44378042) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 149-318, gnl|bosTau2|chr8 (29490752-29490921) | |
| 149-318, gnl|canFam2|chr11 (56085047-56085271) | |
| 149-318, gnl|danRer3|chr1 (19275452-19275260) | |
| 149-318, gnl|dasNov1|scaffold_48237 (2012-1805) | |
| 149-318, gnl|echTel1|scaffold_280990 (63875-63676) | |
| 149-318, gnl|fr1|chrUn (17032292-17032129) | |
| 149-318, gnl|galGal2|chr2 (147564049-147563841) | |
| 149-318, gnl|hg17|chr9 (36660976-36661193) | |
| 149-318, gnl|Hg17|chr9 (36660994-36661163) | |
| 149-318, gnl|loxAfr1|scaffold_96374 (5443-5656) | |
| 149-318, gnl|mm7|chr4 (44364743-44364951) | |
| 149-318, gnl|Mm7|chr4 (44364755-44364924) | |
| 149-318, gnl|monDom2|scaffold_19 (8827510-8827700) | |
| 149-318, gnl|oryCun1|scaffold_116985 (12973-13181) | |
| 149-318, gnl|panTro1|chr11 (37272247-37272464) | |
| 149-318, gnl|rheMac2|chr15 (40760977-40760763) | |
| 149-318, gnl|rn3|chr5 (60841940-60842148) | |
| 149-318, gnl|tetNig1|chr18 (84638-84473) | |
| 149-318, gnl|xenTro1|scaffold_495 (551319-551128) | |
| 422-948, gnl|bosTau2|chr8 (29496892-29497417) | |
| 422-948, gnl|Hg17|chr9 (36667156-36667675) | |
| 422-948, gnl|Mm7|chr4 (44377523-44378042) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sin (0.174948) | |
| lin (0.145603) | |
| ova (0.129132) |