Non-Coding RNA Search

Ss1.1-Pig4-TMW8054E10.3

Sequence:


               
               CACCCCTGCAAGCACCAACCCTTGGCGCTGCAATGAAAAAAATCTTCCAAATGCTTTCTT
TTCCTCCAAGGCAGAGAATGACTCTTAAGTATGGGGAGCAGACTCCTGTCCCCTTGGTTT
ATGTGTTTGTCTCTCCCTCTCTCTGCCATCTTAGGTTGGCATGAGCCATGGTGTCAACAT
GCTTAGCCCCCTTCTGTAACTGCCTCCCTTTAGTTCAGTGGACAGAGTTCCCAAGGCAAA
AACTACCTTCTGACTTGGGTTGGGGCTGGGTTCCCCACTCTTGTTCTTCCCCCATCGTAA
GAGCCAGGCCAAGCCTGTGGGGGCCAAGGGTCACGCAGGATGGGATCTGTGGTCAAAGGA
TAGGTGAGGAGCTGTGGGCATGGGTCCTGCCCCTACTGCCTCCGTCTTCACTCTTCCCCA
TCTTGCCTCTGTAGTTCCAGAAAACTCTTGGCATCTGGAAAAGGGGTTCCCAGTTCTTTC
CCTGTTGGCTTTGCTGTTCCCCAGCTTCCTTTTTGTGTTTTTATAACTGTCACCAGTTTA
GCCACTGTTTAAATTGTATATATTGTTCTGAGGCGCCTGGCCTGTCCCTTCAGTGAGCCA
TGCCCACCCTTGTGTTGTAGTGAGAAGCTGTTGTCACGACTAACCTTCTGTCTCTGGAAT
TGTTTGTTTCAAATAAAGAGTTAAAATTGAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCCCTGCAAGCACCAACCCTTGGCGCTGCAATGAAAAAAATCTTCCAAATGCTTTCTT
TTCCTCCAAGGCAGAGAATGACTCTTAAGTATGGGGAGCAGACTCCTGTCCCCTTGGTTT
ATGTGTTTGTCTCTCCCTCTCTCTGCCATCTTAGGTTGGCATGAGCCATGGTGTCAACAT
GCTTAGCCCCCTTCTGTAACTGCCTCCCTTTAGTTCAGTGGACAGAGTTCCCAAGGCAAA
AACTACCTTCTGACTTGGGTTGGGGCTGGGTTCCCCACTCTTGTTCTTCCCCCATCGTAA
GAGCCAGGCCAAGCCTGTGGGGGCCAAGGGTCACGCAGGATGGGATCTGTGGTCAAAGGA
TAGGTGAGGAGCTGTGGGCATGGGTCCTGCCCCTACTGCCTCCGTCTTCACTCTTCCCCA
TCTTGCCTCTGTAGTTCCAGAAAACTCTTGGCATCTGGAAAAGGGGTTCCCAGTTCTTTC
CCTGTTGGCTTTGCTGTTCCCCAGCTTCCTTTTTGTGTTTTTATAACTGTCACCAGTTTA
GCCACTGTTTAAATTGTATATATTGTTCTGAGGCGCCTGGCCTGTCCCTTCAGTGAGCCA
TGCCCACCCTTGTGTTGTAGTGAGAAGCTGTTGTCACGACTAACCTTCTGTCTCTGGAAT
TGTTTGTTTCAAATAAAGAGTTAAAATTGAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-109, - strand, RNAz p=0.892545
               

               
               422-580, - strand, RNAz p=0.951483

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-109, - strand, RNAz p=0.892545
               

               
               422-580, - strand, RNAz p=0.951483

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               361-455, + strand, RNAmicro p=0.986311

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               361-455, + strand, RNAmicro p=0.986311

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-689, gnl|bosTau2|chrX (22016362-22015686)
               

               
               1-689, gnl|Hg17|chrX (70243184-70242497)
               

               
               1-689, gnl|Mm7|chrX (96732419-96731740)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-689, gnl|bosTau2|chrX (22016362-22015686)
               

               
               1-689, gnl|Hg17|chrX (70243184-70242497)
               

               
               1-689, gnl|Mm7|chrX (96732419-96731740)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               ecc (0.23007)
               

               
               col (0.195008)
               

               
               gul (0.177588)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               eru (0.120048)

Expressed library(ies): 8 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.23007)
               

               
               col (0.195008)
               

               
               gul (0.177588)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               eru (0.120048)

	1-109, - strand, RNAz p=0.892545
	422-580, - strand, RNAz p=0.951483

	1-689, gnl\|bosTau2\|chrX (22016362-22015686)
	1-689, gnl\|Hg17\|chrX (70243184-70242497)
	1-689, gnl\|Mm7\|chrX (96732419-96731740)

	ecc (0.23007)
	col (0.195008)
	gul (0.177588)
	fhi (0.169578)
	cki (0.165235)
	nmm (0.132802)
	cov (0.132153)
	eru (0.120048)