Ss1.1-Pig4-TMW8054E12.3.5
|
AAGGGGAGATGTACAGCGTGCCATACAGCACGGGTCAGGGGCAGCCCCAGCAGCAGCAGT
TGCCCCCAGCCCAGCCCCAGCCTGCCAGCCAGCAACAAGCTGCTCAGCCTTCCCCTCAGC
AAGATGTGTACAACCAGTATGGCAACGCCTATCCTGCCACTGCCACTGCTGCTACTGAGC
GCCGACCAGCAGGCGGCCCCCAGAACCAGTTTCCATTCCAGTTTGGCCGAGACCGTGTCT
CAGCACCCCCTGGCTCCAATGCCCAGCAAAACATGCCACCGCAGATGATGGGCGGCCCCA
TACAGGCATCGGCTGAGGTTGCTCAACAAGGCACCATGTGGCAGGGGCGTAATGACATGA
CCTATAATTACGCCAACAGGCAGAGCACGGGCTCTGCCCCCCAAGGCCCTGCCTATCATG
GCGTGAACCGAACAGATGAAATGCTGCACACGGATCAGAGGGCCAACCATGAAGGCCCAT
GGCCTTCCCATGGCACACGCCAGCCCCCATATGGTCCTTCTGCCCCGGTGCCCCCCATGA
CGAGGCCCCCGCCATCTAATTACCAGCCCCCACCAAGCATGCAGAATCACATTCCTCAGG
TATCCAGCCCCGCTCCCCTGCCCCGGCCAATGGAGAACCGAACCTCTCCTAGCAAGTCTC
CCTTCCTGCACTCTGGGATGAAGATGCAGAAGGCAGGTCCTCCAGTACCTGCCTCGCACA
TAGCACCTGCCCCTGTGCAGCCCCCTATGATTCGGCGGGATATCACCTTCCCACCTGGCT
CTGTTGAAGCCACACAGCCTGTGTTGAAGCAGAGGAGGCGGCTTACAATGAAAGACATCG
GAACCCCGGAGGCATGGCGGGTGATGATGTCCCTCAAGTCTGGGCTGCTGGCAGAGAGCA
CATGGGCATTAGACACCATTAACATCCTGCTGTACGATGACAACAGCATCATGACTTTCA
ACCTCAGTCAGCTCCCAGGATTGCTAGAACTCCTTGTGGAATATTTCCGACGTTGCCTGA
TTGAGATCTTTGGCATTTTAAAGGAGTATGAGGTGGGTGACCCAGGACAGAGAACACTAC
TGGACCCTGGGAGATTCAGTAAAGCATCTAGTCCAGCTCCCGTGGAGGGGGAGGAAGAAG
AAGACCTTCTAGGTCCTAAACTAGAGGAGGAAGAAGAGGAGGAAGTAATTGAAAATGATG
AGGAGATGGCCTTTTCGGGCAGGGACAAGGCTGCCTCAGAGAACAGTGAGGAAAAACTGA
TTAGTAAGTTTGACAAGCTTCCAGTGAAGATCGTACAGAAGAATGACCCATTTGTGGTGG
ACTGCTCAGATAAGCTTGGACGCGTGCAGGAGTTTGACAGCGGCCTGCTACACTGGCGGA
TTGGTGGGGGGGACACCACTGAGCATATCCAGACCCACTTTGAGAGCAAGACAGAGCTTC
TGCCTACCCGGCCTCATGTGCCCTGCCCACCAGTCACCCGGAAGTATGTCACAGCAGTAG
AGGGTACACCAGGGACAACAGAGCAGGAGGGTCCCCCGCCTGATGGCCCTCCAGAAAAAC
GGATCACAGCCACTATGGATGACATGTTGTCCACCCGGTCCAGCACATTGACAGAGGAGG
GAGCTAAGAGTGTAGAGGCCACCAAGGAAAGCAGCAAGTTTCCATTCGGCATCAACCCAG
CACAGAGCCACCGGAACATCAAGATCCTAGAGGATGAACCCCACAGTAAAGATGAGACCC
CACTGTGTACCCTTCTGGACTGGCAAGATTCCCTCGCCAAGCGCTGTGTCTGTGTCTCCA
ATACCATCCGAAGCCTGTCGTTTGTGCCAGGCAACGACTTTGAGATGTCCAAACACCCAG
GGCTGTTGCTGATCCTGGGCAAGTTGATCCTTCTGCACCACAAGCACCCAGAAAGGAAGC
AGGCACCACTAACTTATGAGAAGGAGGAGGAGCAGGACCAAGGGGTGAGCTGCAACAAAG
TGGAATGGTGGTGGGACTGCTTGGAGATGCTTCGGGAAAACACCTTGGTCACACTCGCCA
ACATCTCGGGGCAATTGGACCTCTCCCCCTACCCTGAGAGCATTTGCCTGCCTGTCCTGG
ACGGACTCCTACACTGGGCAGTCTGCCCTTCAGCTGAAGCCCAGGACCCCTTCTCCACCC
TGGGCCCCAACGCCGTCCTTTCCCCCCAGAGACTGGTCTTGGAAACCCTCAGCAAACTCA
GCATCCAGGACAACAATGTGGACCTGATCCTGGCCACTCCCCCCTTCAGCCGCCTGGAGA
AGCTGTATAGCACCATGGTGCGCTTCCTCAGTGACCGAAAGAACCCTGTGTGCCGGGAGA
TGGCTGTAGTACTGCTGGCCAACCTGGCACAGGGCGACAGCCTGGCAGCCCGTGCCATTG
CAGTGCAGAAGGGCAGTATCGGCAACCTCCTAGGCTTCCTAGAGGACAGCCTTGCTGCCA
CACAGTTCCAGCAGAGCCAGGCCAGCCTGCTCCACATGCAGAACCCACCCTTTGAGCCAA
CTAGTGTGGACATGATGCGACGGGCTGCCCGTGCGCTGCTCGCCCTGGCCAAGGTGGACG
AGAACCACTCGGAGTTCACGCTGTATGAATCACGGCTGTTGGACATCTCGGTATCACCGT
TGATGAACTCATTGGTTTCACAAGTCATTTGTGATGTACTGTTTTTGATTGGCCAGTCAT
GACAGCCGTGGGACACCTCCCTCCCTGTGTGTGTGTGCGTGTGTGGAGAACTTAGAAACT
GACTGTTGCCCTTTATTTATGCAAAACCACCTCAGAATCCAGTTTACCCTGTGCTGTCCA
GCTTCTCCCTTGGAAAAAAGTCCTATTTCTCTTTTCTCCCTGCCCCCCACTGGTCCCCAC
CTTTTTATTCCCTGTCCTCACTTTACTCCCCTCAGGACCCTGCCCTATTTGAAAAGACAA
AAGCTCTGCCTACATAGAAGACTTTTTTATTTTAACCAAAGTTACTGTCGTTTACAGTGA
GTTTGGGGAAAAAAAACAAAAAATAAAAATGGCTTTCCCGGTCCTTGCATCAACGGGATG
CCACGTTTCATAACTGTTTTTAATGGTTAAAAAAAAGGAAAAAAAATACAAAAAAAAAAA
ACCTGAAGGACAAAAAAGGTGACTGCTGAACTGTGTGTGGTTTATCGTTGTACATTCACA
ATCTTGCAGGAGCCGAGAAGTTCGGAATTGTGGACAGACCCTGTTCACTGGAGAGGCCTG
TGCAGTAGAGTGTAGACCCTTTCATGTACTGTACTGTACACCTGATACTGTAAACATACT
GTAATAATAATGTCTCACATGGAAACAAGAGAAAACGCTGGGTCAGCAGCAAGCTGTAGT
TTTTAAAAATGTTTTTAGTTAAACGTTGAGGAGAAAAAAAAAGGCTTTTCCCCCAAAGTA
TCATGTGTGAACCTACAACACCCTGACCTCTATCTCTCCTCCTTGATTGTATGAATAACC
CTGAGATCACCTCTTAGAACTGGTTTTAACCTTTAGCTGCAGCGGCTGTGCTGCCACGTG
TGTATATATATGACGTTGTACATTGCACATACCCTTGGATCCCCACAGTTTGGTCCCCCT
CCCAGCTACCCCTTTATAGTATGACGAGTTAACAAGTTGGTGACCTGCACAAAGCGAGAC
ACAGCTATTTAATCTCTTGCCAGACATCGCCCCTCTTGGTGCGATGCTGTACAGGTCTCT
GTAAAAAGTCCTTGCTGTCTCAGCAGCCAATCAACTTATAGTTTATTTTTTTCTGGGTTT
TTGTTTTGTTTTGTTTTCTTTCTAATCGAGGTGTGAAAAAGTTCTAGGTTCAGTTGAGTT
CCTGATGAAGAAACACACAATTGAGATTTTTTCAGTGATAAAATCTGCATATTTGTATTT
CAAACAATGTAGCTAAAAAACTTGATGTAAATTCCTCCTTTTTTCCTTTTTTGGCTTAAT
GAATATCATTTATTCAGTATGAAATCTTTATACTATATGTTCCACGTGTTAAGAATAAAT
GTACATTAAATCTTGGTAAAAAAAAAAAAAAAAAACTCCAGTCGCGAT
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Blue-coloured subsequences are predicted RNA structures by RNAz
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AAGGGGAGATGTACAGCGTGCCATACAGCACGGGTCAGGGGCAGCCCCAGCAGCAGCAGT
TGCCCCCAGCCCAGCCCCAGCCTGCCAGCCAGCAACAAGCTGCTCAGCCTTCCCCTCAGC
AAGATGTGTACAACCAGTATGGCAACGCCTATCCTGCCACTGCCACTGCTGCTACTGAGC
GCCGACCAGCAGGCGGCCCCCAGAACCAGTTTCCATTCCAGTTTGGCCGAGACCGTGTCT
CAGCACCCCCTGGCTCCAATGCCCAGCAAAACATGCCACCGCAGATGATGGGCGGCCCCA
TACAGGCATCGGCTGAGGTTGCTCAACAAGGCACCATGTGGCAGGGGCGTAATGACATGA
CCTATAATTACGCCAACAGGCAGAGCACGGGCTCTGCCCCCCAAGGCCCTGCCTATCATG
GCGTGAACCGAACAGATGAAATGCTGCACACGGATCAGAGGGCCAACCATGAAGGCCCAT
GGCCTTCCCATGGCACACGCCAGCCCCCATATGGTCCTTCTGCCCCGGTGCCCCCCATGA
CGAGGCCCCCGCCATCTAATTACCAGCCCCCACCAAGCATGCAGAATCACATTCCTCAGG
TATCCAGCCCCGCTCCCCTGCCCCGGCCAATGGAGAACCGAACCTCTCCTAGCAAGTCTC
CCTTCCTGCACTCTGGGATGAAGATGCAGAAGGCAGGTCCTCCAGTACCTGCCTCGCACA
TAGCACCTGCCCCTGTGCAGCCCCCTATGATTCGGCGGGATATCACCTTCCCACCTGGCT
CTGTTGAAGCCACACAGCCTGTGTTGAAGCAGAGGAGGCGGCTTACAATGAAAGACATCG
GAACCCCGGAGGCATGGCGGGTGATGATGTCCCTCAAGTCTGGGCTGCTGGCAGAGAGCA
CATGGGCATTAGACACCATTAACATCCTGCTGTACGATGACAACAGCATCATGACTTTCA
ACCTCAGTCAGCTCCCAGGATTGCTAGAACTCCTTGTGGAATATTTCCGACGTTGCCTGA
TTGAGATCTTTGGCATTTTAAAGGAGTATGAGGTGGGTGACCCAGGACAGAGAACACTAC
TGGACCCTGGGAGATTCAGTAAAGCATCTAGTCCAGCTCCCGTGGAGGGGGAGGAAGAAG
AAGACCTTCTAGGTCCTAAACTAGAGGAGGAAGAAGAGGAGGAAGTAATTGAAAATGATG
AGGAGATGGCCTTTTCGGGCAGGGACAAGGCTGCCTCAGAGAACAGTGAGGAAAAACTGA
TTAGTAAGTTTGACAAGCTTCCAGTGAAGATCGTACAGAAGAATGACCCATTTGTGGTGG
ACTGCTCAGATAAGCTTGGACGCGTGCAGGAGTTTGACAGCGGCCTGCTACACTGGCGGA
TTGGTGGGGGGGACACCACTGAGCATATCCAGACCCACTTTGAGAGCAAGACAGAGCTTC
TGCCTACCCGGCCTCATGTGCCCTGCCCACCAGTCACCCGGAAGTATGTCACAGCAGTAG
AGGGTACACCAGGGACAACAGAGCAGGAGGGTCCCCCGCCTGATGGCCCTCCAGAAAAAC
GGATCACAGCCACTATGGATGACATGTTGTCCACCCGGTCCAGCACATTGACAGAGGAGG
GAGCTAAGAGTGTAGAGGCCACCAAGGAAAGCAGCAAGTTTCCATTCGGCATCAACCCAG
CACAGAGCCACCGGAACATCAAGATCCTAGAGGATGAACCCCACAGTAAAGATGAGACCC
CACTGTGTACCCTTCTGGACTGGCAAGATTCCCTCGCCAAGCGCTGTGTCTGTGTCTCCA
ATACCATCCGAAGCCTGTCGTTTGTGCCAGGCAACGACTTTGAGATGTCCAAACACCCAG
GGCTGTTGCTGATCCTGGGCAAGTTGATCCTTCTGCACCACAAGCACCCAGAAAGGAAGC
AGGCACCACTAACTTATGAGAAGGAGGAGGAGCAGGACCAAGGGGTGAGCTGCAACAAAG
TGGAATGGTGGTGGGACTGCTTGGAGATGCTTCGGGAAAACACCTTGGTCACACTCGCCA
ACATCTCGGGGCAATTGGACCTCTCCCCCTACCCTGAGAGCATTTGCCTGCCTGTCCTGG
ACGGACTCCTACACTGGGCAGTCTGCCCTTCAGCTGAAGCCCAGGACCCCTTCTCCACCC
TGGGCCCCAACGCCGTCCTTTCCCCCCAGAGACTGGTCTTGGAAACCCTCAGCAAACTCA
GCATCCAGGACAACAATGTGGACCTGATCCTGGCCACTCCCCCCTTCAGCCGCCTGGAGA
AGCTGTATAGCACCATGGTGCGCTTCCTCAGTGACCGAAAGAACCCTGTGTGCCGGGAGA
TGGCTGTAGTACTGCTGGCCAACCTGGCACAGGGCGACAGCCTGGCAGCCCGTGCCATTG
CAGTGCAGAAGGGCAGTATCGGCAACCTCCTAGGCTTCCTAGAGGACAGCCTTGCTGCCA
CACAGTTCCAGCAGAGCCAGGCCAGCCTGCTCCACATGCAGAACCCACCCTTTGAGCCAA
CTAGTGTGGACATGATGCGACGGGCTGCCCGTGCGCTGCTCGCCCTGGCCAAGGTGGACG
AGAACCACTCGGAGTTCACGCTGTATGAATCACGGCTGTTGGACATCTCGGTATCACCGT
TGATGAACTCATTGGTTTCACAAGTCATTTGTGATGTACTGTTTTTGATTGGCCAGTCAT
GACAGCCGTGGGACACCTCCCTCCCTGTGTGTGTGTGCGTGTGTGGAGAACTTAGAAACT
GACTGTTGCCCTTTATTTATGCAAAACCACCTCAGAATCCAGTTTACCCTGTGCTGTCCA
GCTTCTCCCTTGGAAAAAAGTCCTATTTCTCTTTTCTCCCTGCCCCCCACTGGTCCCCAC
CTTTTTATTCCCTGTCCTCACTTTACTCCCCTCAGGACCCTGCCCTATTTGAAAAGACAA
AAGCTCTGCCTACATAGAAGACTTTTTTATTTTAACCAAAGTTACTGTCGTTTACAGTGA
GTTTGGGGAAAAAAAACAAAAAATAAAAATGGCTTTCCCGGTCCTTGCATCAACGGGATG
CCACGTTTCATAACTGTTTTTAATGGTTAAAAAAAAGGAAAAAAAATACAAAAAAAAAAA
ACCTGAAGGACAAAAAAGGTGACTGCTGAACTGTGTGTGGTTTATCGTTGTACATTCACA
ATCTTGCAGGAGCCGAGAAGTTCGGAATTGTGGACAGACCCTGTTCACTGGAGAGGCCTG
TGCAGTAGAGTGTAGACCCTTTCATGTACTGTACTGTACACCTGATACTGTAAACATACT
GTAATAATAATGTCTCACATGGAAACAAGAGAAAACGCTGGGTCAGCAGCAAGCTGTAGT
TTTTAAAAATGTTTTTAGTTAAACGTTGAGGAGAAAAAAAAAGGCTTTTCCCCCAAAGTA
TCATGTGTGAACCTACAACACCCTGACCTCTATCTCTCCTCCTTGATTGTATGAATAACC
CTGAGATCACCTCTTAGAACTGGTTTTAACCTTTAGCTGCAGCGGCTGTGCTGCCACGTG
TGTATATATATGACGTTGTACATTGCACATACCCTTGGATCCCCACAGTTTGGTCCCCCT
CCCAGCTACCCCTTTATAGTATGACGAGTTAACAAGTTGGTGACCTGCACAAAGCGAGAC
ACAGCTATTTAATCTCTTGCCAGACATCGCCCCTCTTGGTGCGATGCTGTACAGGTCTCT
GTAAAAAGTCCTTGCTGTCTCAGCAGCCAATCAACTTATAGTTTATTTTTTTCTGGGTTT
TTGTTTTGTTTTGTTTTCTTTCTAATCGAGGTGTGAAAAAGTTCTAGGTTCAGTTGAGTT
CCTGATGAAGAAACACACAATTGAGATTTTTTCAGTGATAAAATCTGCATATTTGTATTT
CAAACAATGTAGCTAAAAAACTTGATGTAAATTCCTCCTTTTTTCCTTTTTTGGCTTAAT
GAATATCATTTATTCAGTATGAAATCTTTATACTATATGTTCCACGTGTTAAGAATAAAT
GTACATTAAATCTTGGTAAAAAAAAAAAAAAAAAACTCCAGTCGCGAT
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1-559, - strand, RNAz p=0.996814 |
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680-841, - strand, RNAz p=0.988823 |
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1041-1237, - strand, RNAz p=0.974038 |
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2038-2237, - strand, RNAz p=0.995866 |
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2318-2517, - strand, RNAz p=0.831258 |
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2598-2717, + strand, RNAz p=0.899648 |
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2933-3323, - strand, RNAz p=0.99586 |
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3364-3478, - strand, RNAz p=0.728121 |
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3639-3796, - strand, RNAz p=0.973563 |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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1-559, - strand, RNAz p=0.996814 |
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680-841, - strand, RNAz p=0.988823 |
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1041-1237, - strand, RNAz p=0.974038 |
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2038-2237, - strand, RNAz p=0.995866 |
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2318-2517, - strand, RNAz p=0.831258 |
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2598-2717, + strand, RNAz p=0.899648 |
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2933-3323, - strand, RNAz p=0.99586 |
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3364-3478, - strand, RNAz p=0.728121 |
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3639-3796, - strand, RNAz p=0.973563 |
Human gene identifier and UTR site,
human gene reading direction
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
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thg (0.507164) |
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liv (0.438853) |
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spl (0.286369) |
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fce (0.271592) |
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kid (0.259471) |
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ova (0.258264) |
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bla (0.248694) |
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tra (0.246184) |
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ebs (0.236602) |
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ecc (0.23007) |
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ece (0.229305) |
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mas (0.210305) |
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hea (0.204499) |
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mgm (0.180343) |
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sto (0.179824) |
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gul (0.177588) |
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fty (0.17584) |
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fbs (0.175346) |
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mcp (0.170648) |
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eye (0.170503) |
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cki (0.165235) |
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csp (0.161186) |
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mga (0.160205) |
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fco (0.157208) |
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tbr (0.154178) |
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cag (0.151194) |
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bfe (0.149858) |
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fat (0.147427) |
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ski (0.146735) |
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cov (0.132153) |
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eep (0.122564) |
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pgl (0.118483) |
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jca (0.11396) |
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spc (0.113366) |
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ldo (0.0970026) |
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thg (0.507164) |
|
liv (0.438853) |
|
spl (0.286369) |
|
fce (0.271592) |
|
kid (0.259471) |
|
ova (0.258264) |
|
bla (0.248694) |
|
tra (0.246184) |
|
ebs (0.236602) |
|
ecc (0.23007) |
|
ece (0.229305) |
|
mas (0.210305) |
|
hea (0.204499) |
|
mgm (0.180343) |
|
sto (0.179824) |
|
gul (0.177588) |
|
fty (0.17584) |
|
fbs (0.175346) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
cki (0.165235) |
|
csp (0.161186) |
|
mga (0.160205) |
|
fco (0.157208) |
|
tbr (0.154178) |
|
cag (0.151194) |
|
bfe (0.149858) |
|
fat (0.147427) |
|
ski (0.146735) |
|
cov (0.132153) |
|
eep (0.122564) |
|
pgl (0.118483) |
|
jca (0.11396) |
|
spc (0.113366) |
|
ldo (0.0970026) |