Non-Coding RNA Search

Ss1.1-Pig4-TMW8054E14.3

Sequence:


               
               GGTGGAGAAGGAGGAGGAAGAGGAGGAGGAGAGCGCGAGCCAGGCCCTGGAGCCGGATGC
AGACCCAGGACTCCGGGGCGAGCTCTGCGCACTCCGCTCTGAGGACTTCCTGCATTTGGA
TCATCCGGTTTATTTATGTGCAATGTGCCTCCCTCTCTTTGCCCCCCTTTGAGGCATCCG
CTCCCCACCACCCCCTCCAAAAAAGTGGATATTTGAAGAAAAGCATTCCATATTTTAATA
TGAAGAGGACACTCCCGCGTGGTAAGGGATCCCGTCGTCGTCTTGTAGATTCTCTGTTTG
TGAATGTTTCCTCTTGGCTGTGTAGACACCAGCGTTGCTCCCTCCCCACCTATCCAGCCC
CTTACAGATAAAGACAGCTGATAATAGTGTATTTGTGAAGTGTATCTTTAATACCTGGCC
TTTGGATATAAATATTCCTGGGGATTATAAAGTTTTATTTCAAAGCAGAAAACGGGGCCG
CTAACATTTCCGTTGGGGTCGGTATCTAGTGCTGCCGTTTCATCTGTGTGGTTCCCTATT
TGAAGATGTTTCCAACAGCTCCTTGTTTTGTGCACTTCCGTCCTCTAAAACTAAGTGGAA
TTTAATTAATATTGAAGGTGTAAACGTTGTAAGTAATCAATAAACCACTGTGTGTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGGAGAAGGAGGAGGAAGAGGAGGAGGAGAGCGCGAGCCAGGCCCTGGAGCCGGATGC
AGACCCAGGACTCCGGGGCGAGCTCTGCGCACTCCGCTCTGAGGACTTCCTGCATTTGGA
TCATCCGGTTTATTTATGTGCAATGTGCCTCCCTCTCTTTGCCCCCCTTTGAGGCATCCG
CTCCCCACCACCCCCTCCAAAAAAGTGGATATTTGAAGAAAAGCATTCCATATTTTAATA
TGAAGAGGACACTCCCGCGTGGTAAGGGATCCCGTCGTCGTCTTGTAGATTCTCTGTTTG
TGAATGTTTCCTCTTGGCTGTGTAGACACCAGCGTTGCTCCCTCCCCACCTATCCAGCCC
CTTACAGATAAAGACAGCTGATAATAGTGTATTTGTGAAGTGTATCTTTAATACCTGGCC
TTTGGATATAAATATTCCTGGGGATTATAAAGTTTTATTTCAAAGCAGAAAACGGGGCCG
CTAACATTTCCGTTGGGGTCGGTATCTAGTGCTGCCGTTTCATCTGTGTGGTTCCCTATT
TGAAGATGTTTCCAACAGCTCCTTGTTTTGTGCACTTCCGTCCTCTAAAACTAAGTGGAA
TTTAATTAATATTGAAGGTGTAAACGTTGTAAGTAATCAATAAACCACTGTGTGTTTTTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               496-649, gnl|bosTau2|chr15 (22135772-22135618)
               

               
               496-649, gnl|Hg17|chr4 (174822662-174822509)
               

               
               496-649, gnl|Mm7|chr8 (55707179-55707337)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               496-649, gnl|bosTau2|chr15 (22135772-22135618)
               

               
               496-649, gnl|Hg17|chr4 (174822662-174822509)
               

               
               496-649, gnl|Mm7|chr8 (55707179-55707337)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               hea (0.817996)
               

               
               che (0.408942)
               

               
               ute (0.265569)
               

               
               sug (0.254582)
               

               
               fli (0.202881)
               

               
               cut (0.169924)
               

               
               hlv (0.139256)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.817996)
               

               
               che (0.408942)
               

               
               ute (0.265569)
               

               
               sug (0.254582)
               

               
               fli (0.202881)
               

               
               cut (0.169924)
               

               
               hlv (0.139256)

	496-649, gnl\|bosTau2\|chr15 (22135772-22135618)
	496-649, gnl\|Hg17\|chr4 (174822662-174822509)
	496-649, gnl\|Mm7\|chr8 (55707179-55707337)

	hea (0.817996)
	che (0.408942)
	ute (0.265569)
	sug (0.254582)
	fli (0.202881)
	cut (0.169924)
	hlv (0.139256)