Non-Coding RNA Search

Ss1.1-Pig4-TMW8054E18.5

Sequence:


               
               TTTTTCTTGCCCCCCTCCCCTATATTGCTGCATATTCCTTTAGAATCAATGCAGTATTAC
CATTGAAACATGGGACTCCTAACAACTCATAAAGCCACTTAGAAACAGACTGTTGTAGCA
TTGTTAGGTTTTGAAAGATTATTCCTCCCTACTGTATCACTGAAGCTGCTAGTCATTATT
GGCAATCAGTTTAAACCAAAAAGCTGCTGAATAACAACGTCATTGAAATTCTTTGCAAGC
ACTACTTAACATATATTAGCCTGTTGGGAATCATAAACAGAGAAAGTATGTTATTACCTA
CTTCTACTGGGTCCGTGCTGCATTTCTTGTGAACTTATAATGGTGCTTCTGATTTTCTGA
TGATTTTTCTCTCTGTTAAATACGTGTATTAAAGGGTACAGTACTTATATTATCTTCCAT
AATTCCAACCAACATGGTGGTCCAGTAGTTAACAAGCGGGTAGTGAAATAGAAGGTGTCC
CCAAAGTCTTAGTGCAATCTTAAGCTTTAATATAGTGTGCTTAGACACTCCAGGATTTTT
CTGATGATTTTTCTCTCTGTTAAATACTTGTATTAAAGGGTACAGTACTTATATTATCTT
CCATAATTCCAACCAACATGGTGGTCCAGTAGTTAACAAGCGGGTAGTGAAATAGAAGGT
GTCCCAAAAGTCTTAGTGCAATCTTAAGCTTTAATATAGTGTGCTTAGACACTCCAGGAC
ACTGCTGCATTAGTATAAATGCTACAGACTGGCAAAACATCACTTGATAGTTTACTTTTC
AACTTAATTTTGTAAGTTTTATTTTTTTGCCATTTTCTTGGGCAGCTCCCTATGCCGCGG
GAACGACCCAAGAAATGGCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTCTTGCCCCCCTCCCCTATATTGCTGCATATTCCTTTAGAATCAATGCAGTATTAC
CATTGAAACATGGGACTCCTAACAACTCATAAAGCCACTTAGAAACAGACTGTTGTAGCA
TTGTTAGGTTTTGAAAGATTATTCCTCCCTACTGTATCACTGAAGCTGCTAGTCATTATT
GGCAATCAGTTTAAACCAAAAAGCTGCTGAATAACAACGTCATTGAAATTCTTTGCAAGC
ACTACTTAACATATATTAGCCTGTTGGGAATCATAAACAGAGAAAGTATGTTATTACCTA
CTTCTACTGGGTCCGTGCTGCATTTCTTGTGAACTTATAATGGTGCTTCTGATTTTCTGA
TGATTTTTCTCTCTGTTAAATACGTGTATTAAAGGGTACAGTACTTATATTATCTTCCAT
AATTCCAACCAACATGGTGGTCCAGTAGTTAACAAGCGGGTAGTGAAATAGAAGGTGTCC
CCAAAGTCTTAGTGCAATCTTAAGCTTTAATATAGTGTGCTTAGACACTCCAGGATTTTT
CTGATGATTTTTCTCTCTGTTAAATACTTGTATTAAAGGGTACAGTACTTATATTATCTT
CCATAATTCCAACCAACATGGTGGTCCAGTAGTTAACAAGCGGGTAGTGAAATAGAAGGT
GTCCCAAAAGTCTTAGTGCAATCTTAAGCTTTAATATAGTGTGCTTAGACACTCCAGGAC
ACTGCTGCATTAGTATAAATGCTACAGACTGGCAAAACATCACTTGATAGTTTACTTTTC
AACTTAATTTTGTAAGTTTTATTTTTTTGCCATTTTCTTGGGCAGCTCCCTATGCCGCGG
GAACGACCCAAGAAATGGCAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               15-535, gnl|bosTau2|chr2 (62158230-62157731)
               

               
               15-535, gnl|Hg17|chr2 (208444313-208444786)
               

               
               15-535, gnl|Mm7|chr1 (64965867-64966469)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-535, gnl|bosTau2|chr2 (62158230-62157731)
               

               
               15-535, gnl|Hg17|chr2 (208444313-208444786)
               

               
               15-535, gnl|Mm7|chr1 (64965867-64966469)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)
               

               
               eje (0.0988338)

	15-535, gnl\|bosTau2\|chr2 (62158230-62157731)
	15-535, gnl\|Hg17\|chr2 (208444313-208444786)
	15-535, gnl\|Mm7\|chr1 (64965867-64966469)