Non-Coding RNA Search

Ss1.1-Pig4-TMW8054E22.5

Sequence:


               
               CCTATCTATTCCACTGTGGTCTGGGTTTCCTTTGGTGAGATTCAGGCTCAAGTTCTAGCA
AAATGTCAGCAGTCTGTACTGACACACCAGCCTCATTTACAAAAAGGAGAAACTAAAACA
GTGACAGTATTTTTTTTTAAGCTCTTTTACAAATTCATGTTTTATGTATTTTTTTATGAC
ATGAGCTCTCTAAGAAATGTACCTCATCCCTGCAGTTTTCTTCTAAGTGTTTTCATTTGT
GAGCAAACTGCAGTCACTCTCACAGGAGTCCCCTTGGATGTCAGGAGGCAGCACTTTAAG
CCTTGTGACGCCAGACATGTCCATCTGTCTCATCAGAGTTGGAGACTAAGTGCATAACTC
AGAGCTCAGTGTAACTTTCGTTGATTTGCCTAACCATAAAATCTTGTTGCTCTTTTTTTC
ATATAGCTTTTTTTTTTTTTCTTTCTTCAGCCTCTTAAGGAAAACTTCATTTCCCAGCAC
AACCCTGTGTGTGCATCTATTTAAATGCATGTCTTTGAAACAAAGACTGTGTTCACAGCC
ATAACTAAAGCTGGAAAGTCAGGCCAGGGAGGGAGAAAAAGACATCGTATTAGAATTTAT
TCAGGAAAGACTATTGGGTGAAAAAAAAAATACTCCTCTCCTACCCTCCCATCCTGTACC
CCTCTCTATCCCCATGAAAAACAATTTCCCACTGTAATCAGGATTATCTGTGTATTTAAG
CTCTGATAGGTAACATGCGAATGTGTTGGCACAGATAAGTCTTTCTCATGTGCAGGGACT
AGAGTTGTGTGGGCAGGGCCACCCACTACCCCAAGGCTAACATCCAAGGGGCTTAGAGAG
GGATTGGAGCTCCTGGGGTGACTATCAGAGCTTGGGGCCCATTGTGCTAGCCTTGACATT
AGCAAAAGAAGCTGAGTTTTGTTTAAGATAAAAAGTAGGGCTGATTTCCCTCTGGGGACT
TGTCATCCACACGGTTTGCACGCAGTCCCCTGACCCCAGCTGCAGAGCCCCCCCCCCCAG
CTGTGGGGACCTCAACACACATAGGCTGCAGCTCAAGGTGTCTGCCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTATCTATTCCACTGTGGTCTGGGTTTCCTTTGGTGAGATTCAGGCTCAAGTTCTAGCA
AAATGTCAGCAGTCTGTACTGACACACCAGCCTCATTTACAAAAAGGAGAAACTAAAACA
GTGACAGTATTTTTTTTTAAGCTCTTTTACAAATTCATGTTTTATGTATTTTTTTATGAC
ATGAGCTCTCTAAGAAATGTACCTCATCCCTGCAGTTTTCTTCTAAGTGTTTTCATTTGT
GAGCAAACTGCAGTCACTCTCACAGGAGTCCCCTTGGATGTCAGGAGGCAGCACTTTAAG
CCTTGTGACGCCAGACATGTCCATCTGTCTCATCAGAGTTGGAGACTAAGTGCATAACTC
AGAGCTCAGTGTAACTTTCGTTGATTTGCCTAACCATAAAATCTTGTTGCTCTTTTTTTC
ATATAGCTTTTTTTTTTTTTCTTTCTTCAGCCTCTTAAGGAAAACTTCATTTCCCAGCAC
AACCCTGTGTGTGCATCTATTTAAATGCATGTCTTTGAAACAAAGACTGTGTTCACAGCC
ATAACTAAAGCTGGAAAGTCAGGCCAGGGAGGGAGAAAAAGACATCGTATTAGAATTTAT
TCAGGAAAGACTATTGGGTGAAAAAAAAAATACTCCTCTCCTACCCTCCCATCCTGTACC
CCTCTCTATCCCCATGAAAAACAATTTCCCACTGTAATCAGGATTATCTGTGTATTTAAG
CTCTGATAGGTAACATGCGAATGTGTTGGCACAGATAAGTCTTTCTCATGTGCAGGGACT
AGAGTTGTGTGGGCAGGGCCACCCACTACCCCAAGGCTAACATCCAAGGGGCTTAGAGAG
GGATTGGAGCTCCTGGGGTGACTATCAGAGCTTGGGGCCCATTGTGCTAGCCTTGACATT
AGCAAAAGAAGCTGAGTTTTGTTTAAGATAAAAAGTAGGGCTGATTTCCCTCTGGGGACT
TGTCATCCACACGGTTTGCACGCAGTCCCCTGACCCCAGCTGCAGAGCCCCCCCCCCCAG
CTGTGGGGACCTCAACACACATAGGCTGCAGCTCAAGGTGTCTGCCAC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               561-1068, gnl|bosTau2|chr11 (24685181-24685689)
               

               
               561-1068, gnl|Hg17|chr16 (56754524-56754053)
               

               
               561-1068, gnl|Mm7|chr15 (91695435-91694967)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               561-1068, gnl|bosTau2|chr11 (24685181-24685689)
               

               
               561-1068, gnl|Hg17|chr16 (56754524-56754053)
               

               
               561-1068, gnl|Mm7|chr15 (91695435-91694967)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               csk (0.140746)
               

               
               eje (0.0988338)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.140746)
               

               
               eje (0.0988338)

	561-1068, gnl\|bosTau2\|chr11 (24685181-24685689)
	561-1068, gnl\|Hg17\|chr16 (56754524-56754053)
	561-1068, gnl\|Mm7\|chr15 (91695435-91694967)