Ss1.1-Pig4-TMW8054F06.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCACCAGCCAGCCGGGAGCAGCGGCCGGCGCTCGGATCTCGCTCGCCCCTGTTCGTCCGT CCGCGCGCGCCTGCCAGCCAGCCAGCCTGCCCGCCCGCCCGCCCGCCTGTCTGCTCGGGA TGGCTGGTTACCTGCGAGTCGTACGCTCGCTCTGCCGAGCTTCCGGCTCCGGGCCGGCCT GGGCGCCGGCAGCCTTGACAGCCCCCAACTTGCAAGAGCAGCCGCGGCGCCACTATGCCG ACCAGAGGATCAAGGTGGCGAAGCCGGTGGTGGAGATGGACGGTGATGAGATGACCCGAA TCATCTGGCAGTTCATCAAGGAGAAGCTCATCCTGCCCCACGTGGATGTCCAGCTCAAGT ATTTTGACCTGGGGCTCCCAAACCGGGACCAGACCAACGATCAGGTCACCATCGACTCCG CCTTGGCCACCCAGAAGTACAGCGTGGCTGTCAAGTGTGCCACCATCACCCCCGATGAGG CCCGTGTGGAAGAGTTCAAGCTGAAGAAGATGTGGAAGAGTCCCAATGGAACCATCCGGA ACATCCTCGGGGGGACTGTTTTCCGGGAGCCCATCATCTGCAAGAACATCCCACGCCTTG TGCCTGGCTGGACCAAGCCCATCACCATCGGCAGGCACGCTCACGGCGACCAGTACAAGG CCACAGACTTTGTGGTTGACCGGGCGGGCACGTTCAAGATTGTCTTCACCCCAAAGGACG GCAGCAGTGCCAAGCAGTGGGAAGTGTACAACTTCCCCGCAGGCGGCGTGGGCATGGGCA TGTACAACACAGATGAGTCCATCTCAGGGTTCGCGCACAGCTGCTTCCAGTACGCCATCC AGAAGAAGTGGCCGCTCTACATGAGCACCAAGAATACCATTCTGAAAGCCTACGACGGGC GCTTCAAAGACATCTTCCAGGAGATCTTTGAGAAGCACTATAAGACCGATTTCGACAAGT ATAAGATCTGGTATGAGCACCGGCTCATTGATGACATGGTGGCTCAGGTCCTCAAGTCTT CGGGCGGCTTCGTGTGGGCCTGCAAGAACTACGATGGAGACGTGCAGTCGGACATCCTGG CCCAGGGCTTTGGCTCCCTTGGCCTGATGACGTCTGTGCTGGTCTGCCCGGATGGCAAGA CCATCGAAGCTGAGGCTGCTCATGGGACAGTCACCCGCCACTATAGGGAGCACCAGAAGG GCCGGCCTACCAGCACCAACCCCATCGCCAGCATCTTTGCCTGGACGCGTGGCCTGGAGC ACCGGGGGAAGTTGGACGGAAACCAAGACCTGATCAGGTTTGCTCAGACTCTGGAGAAGG TGTGTGTTGAGACAGTAGAGAGCGGAGCCATGACCAAGGACCTGGCGGGCTGTATCCATG GCCTCAGCAATGTGAAGCTGAACGAGCACTTCCTGAACACCTCGGACTTCCTGGACACCA TCAAAAGCAACCTGGACAGAGCTCTGGGCCGGCAGTAGCGGGGTGGGAGCGCTGTGGGCT GCCCTGGTGGCCGGGCCGGAGCCCAGCGGGTGGCCGCAGTTGCCCACCTCCCTCCAGCAC CACTTGGCGAGGGTGAGCCTCTCAGCCCCTCTTAGGAGGCCTCTCCAGGGGCTATTTTTT TATAAGCAAGATGTTTTTAAAGTATCTGTGTGTTTCCCCTCATGGTGACATGAGGCAGGA ACAGAGTGTTTTACCTCAGCCAGTGCGTGGTTCTGCGTACTGTAATTTATATTGTCCTCG GAACACATGGTGCCATGTTTAGCTACTAAAAAGCTCTTCACAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCACCAGCCAGCCGGGAGCAGCGGCCGGCGCTCGGATCTCGCTCGCCCCTGTTCGTCCGT CCGCGCGCGCCTGCCAGCCAGCCAGCCTGCCCGCCCGCCCGCCCGCCTGTCTGCTCGGGA TGGCTGGTTACCTGCGAGTCGTACGCTCGCTCTGCCGAGCTTCCGGCTCCGGGCCGGCCT GGGCGCCGGCAGCCTTGACAGCCCCCAACTTGCAAGAGCAGCCGCGGCGCCACTATGCCG ACCAGAGGATCAAGGTGGCGAAGCCGGTGGTGGAGATGGACGGTGATGAGATGACCCGAA TCATCTGGCAGTTCATCAAGGAGAAGCTCATCCTGCCCCACGTGGATGTCCAGCTCAAGT ATTTTGACCTGGGGCTCCCAAACCGGGACCAGACCAACGATCAGGTCACCATCGACTCCG CCTTGGCCACCCAGAAGTACAGCGTGGCTGTCAAGTGTGCCACCATCACCCCCGATGAGG CCCGTGTGGAAGAGTTCAAGCTGAAGAAGATGTGGAAGAGTCCCAATGGAACCATCCGGA ACATCCTCGGGGGGACTGTTTTCCGGGAGCCCATCATCTGCAAGAACATCCCACGCCTTG TGCCTGGCTGGACCAAGCCCATCACCATCGGCAGGCACGCTCACGGCGACCAGTACAAGG CCACAGACTTTGTGGTTGACCGGGCGGGCACGTTCAAGATTGTCTTCACCCCAAAGGACG GCAGCAGTGCCAAGCAGTGGGAAGTGTACAACTTCCCCGCAGGCGGCGTGGGCATGGGCA TGTACAACACAGATGAGTCCATCTCAGGGTTCGCGCACAGCTGCTTCCAGTACGCCATCC AGAAGAAGTGGCCGCTCTACATGAGCACCAAGAATACCATTCTGAAAGCCTACGACGGGC GCTTCAAAGACATCTTCCAGGAGATCTTTGAGAAGCACTATAAGACCGATTTCGACAAGT ATAAGATCTGGTATGAGCACCGGCTCATTGATGACATGGTGGCTCAGGTCCTCAAGTCTT CGGGCGGCTTCGTGTGGGCCTGCAAGAACTACGATGGAGACGTGCAGTCGGACATCCTGG CCCAGGGCTTTGGCTCCCTTGGCCTGATGACGTCTGTGCTGGTCTGCCCGGATGGCAAGA CCATCGAAGCTGAGGCTGCTCATGGGACAGTCACCCGCCACTATAGGGAGCACCAGAAGG GCCGGCCTACCAGCACCAACCCCATCGCCAGCATCTTTGCCTGGACGCGTGGCCTGGAGC ACCGGGGGAAGTTGGACGGAAACCAAGACCTGATCAGGTTTGCTCAGACTCTGGAGAAGG TGTGTGTTGAGACAGTAGAGAGCGGAGCCATGACCAAGGACCTGGCGGGCTGTATCCATG GCCTCAGCAATGTGAAGCTGAACGAGCACTTCCTGAACACCTCGGACTTCCTGGACACCA TCAAAAGCAACCTGGACAGAGCTCTGGGCCGGCAGTAGCGGGGTGGGAGCGCTGTGGGCT GCCCTGGTGGCCGGGCCGGAGCCCAGCGGGTGGCCGCAGTTGCCCACCTCCCTCCAGCAC CACTTGGCGAGGGTGAGCCTCTCAGCCCCTCTTAGGAGGCCTCTCCAGGGGCTATTTTTT TATAAGCAAGATGTTTTTAAAGTATCTGTGTGTTTCCCCTCATGGTGACATGAGGCAGGA ACAGAGTGTTTTACCTCAGCCAGTGCGTGGTTCTGCGTACTGTAATTTATATTGTCCTCG GAACACATGGTGCCATGTTTAGCTACTAAAAAGCTCTTCACAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 375-1762, - strand, RNAz p=0.985524 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 375-1762, - strand, RNAz p=0.985524 |
| Aligned organism(s): 66 entry(ies) | More info |
| Aligned organism(s): 66 entry(ies) | Help | Less info |
| 91-249, gnl|bosTau2|chr21 (11883241-11883082) | |
| 91-249, gnl|Hg17|chr15 (88446636-88446496) | |
| 91-249, gnl|Mm7|chr7 (75982877-75982740) | |
| 267-1375, gnl|bosTau2|chr3 (57600601-57601710) | |
| 267-1375, gnl|Hg17|chr6 (7463045-7461938) | |
| 267-1375, gnl|Mm7|chr1 (65417129-65402698) | |
| 325-492, gnl|bosTau2|chr21 (11873273-11873106) | |
| 325-492, gnl|canFam2|chr3 (55937300-55937437) | |
| 325-492, gnl|danRer3|chr9 (21153997-21154125) | |
| 325-492, gnl|dasNov1|scaffold_15132 (16114-16251) | |
| 325-492, gnl|echTel1|scaffold_281573 (10134-9997) | |
| 325-492, gnl|fr1|chrUn (286335817-286335954) | |
| 325-492, gnl|hg17|chr15 (88434709-88434846) | |
| 325-492, gnl|Hg17|chr15 (88434882-88434715) | |
| 325-492, gnl|loxAfr1|scaffold_4645 (86269-86406) | |
| 325-492, gnl|mm7|chr7 (75968331-75968468) | |
| 325-492, gnl|Mm7|chr7 (75968504-75968337) | |
| 325-492, gnl|monDom2|scaffold_45 (10284469-10284332) | |
| 325-492, gnl|oryCun1|scaffold_169449 (9298-9435) | |
| 325-492, gnl|panTro1|chr16 (89363506-89363643) | |
| 325-492, gnl|rheMac2|chr7 (69737561-69737698) | |
| 325-492, gnl|rn3|chr1 (135960394-135960531) | |
| 325-492, gnl|tetNig1|chr5 (2370359-2370491) | |
| 325-492, gnl|xenTro1|scaffold_130 (224777-224645) | |
| 651-797, gnl|bosTau2|chr21 (11872364-11872218) | |
| 651-797, gnl|Hg17|chr15 (88432741-88432595) | |
| 651-797, gnl|Mm7|chr7 (75966511-75966365) | |
| 935-1087, gnl|bosTau2|chr21 (11871047-11870895) | |
| 935-1087, gnl|canFam2|chr3 (55934379-55934553) | |
| 935-1087, gnl|danRer3|chrUn (135982018-135982194) | |
| 935-1087, gnl|dasNov1|scaffold_15132 (13015-13190) | |
| 935-1087, gnl|echTel1|scaffold_238377 (2381-2207) | |
| 935-1087, gnl|fr1|chrUn (286334575-286334744) | |
| 935-1087, gnl|hg17|chr15 (88431340-88431514) | |
| 935-1087, gnl|Hg17|chr15 (88431499-88431347) | |
| 935-1087, gnl|loxAfr1|scaffold_4645 (81881-82055) | |
| 935-1087, gnl|mm7|chr7 (75965401-75965570) | |
| 935-1087, gnl|Mm7|chr7 (75965555-75965403) | |
| 935-1087, gnl|monDom2|scaffold_45 (10289389-10289214) | |
| 935-1087, gnl|oryCun1|scaffold_169449 (5762-5936) | |
| 935-1087, gnl|panTro1|chr16 (89360076-89360250) | |
| 935-1087, gnl|rheMac2|chr7 (69734270-69734444) | |
| 935-1087, gnl|rn3|chr1 (135957478-135957652) | |
| 935-1087, gnl|tetNig1|chr5 (2369322-2369496) | |
| 935-1087, gnl|xenTro1|scaffold_130 (226619-226440) | |
| 1198-1299, gnl|bosTau2|chr21 (11868263-11868162) | |
| 1198-1299, gnl|canFam2|chr3 (55932178-55932280) | |
| 1198-1299, gnl|danRer3|chrUn (135978853-135978955) | |
| 1198-1299, gnl|dasNov1|scaffold_15132 (11253-11355) | |
| 1198-1299, gnl|echTel1|scaffold_238377 (10963-10861) | |
| 1198-1299, gnl|fr1|chrUn (286334053-286334155) | |
| 1198-1299, gnl|hg17|chr15 (88429236-88429338) | |
| 1198-1299, gnl|Hg17|chr15 (88429336-88429235) | |
| 1198-1299, gnl|loxAfr1|scaffold_4645 (79224-79326) | |
| 1198-1299, gnl|mm7|chr7 (75963398-75963500) | |
| 1198-1299, gnl|Mm7|chr7 (75963498-75963397) | |
| 1198-1299, gnl|monDom2|scaffold_45 (10292339-10292237) | |
| 1198-1299, gnl|oryCun1|scaffold_169449 (4114-4216) | |
| 1198-1299, gnl|panTro1|chr16 (89357976-89358078) | |
| 1198-1299, gnl|rheMac2|chr7 (69732183-69732285) | |
| 1198-1299, gnl|rn3|chr1 (135955439-135955541) | |
| 1198-1299, gnl|tetNig1|chr5 (2368962-2369064) | |
| 1198-1299, gnl|xenTro1|scaffold_240 (591250-591169) | |
| 1383-1785, gnl|bosTau2|chr21 (11867381-11866966) | |
| 1383-1785, gnl|Hg17|chr15 (88428597-88428214) | |
| 1383-1785, gnl|Mm7|chr7 (75962811-75962446) |
| Aligned organism(s): 66 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 91-249, gnl|bosTau2|chr21 (11883241-11883082) | |
| 91-249, gnl|Hg17|chr15 (88446636-88446496) | |
| 91-249, gnl|Mm7|chr7 (75982877-75982740) | |
| 267-1375, gnl|bosTau2|chr3 (57600601-57601710) | |
| 267-1375, gnl|Hg17|chr6 (7463045-7461938) | |
| 267-1375, gnl|Mm7|chr1 (65417129-65402698) | |
| 325-492, gnl|bosTau2|chr21 (11873273-11873106) | |
| 325-492, gnl|canFam2|chr3 (55937300-55937437) | |
| 325-492, gnl|danRer3|chr9 (21153997-21154125) | |
| 325-492, gnl|dasNov1|scaffold_15132 (16114-16251) | |
| 325-492, gnl|echTel1|scaffold_281573 (10134-9997) | |
| 325-492, gnl|fr1|chrUn (286335817-286335954) | |
| 325-492, gnl|hg17|chr15 (88434709-88434846) | |
| 325-492, gnl|Hg17|chr15 (88434882-88434715) | |
| 325-492, gnl|loxAfr1|scaffold_4645 (86269-86406) | |
| 325-492, gnl|mm7|chr7 (75968331-75968468) | |
| 325-492, gnl|Mm7|chr7 (75968504-75968337) | |
| 325-492, gnl|monDom2|scaffold_45 (10284469-10284332) | |
| 325-492, gnl|oryCun1|scaffold_169449 (9298-9435) | |
| 325-492, gnl|panTro1|chr16 (89363506-89363643) | |
| 325-492, gnl|rheMac2|chr7 (69737561-69737698) | |
| 325-492, gnl|rn3|chr1 (135960394-135960531) | |
| 325-492, gnl|tetNig1|chr5 (2370359-2370491) | |
| 325-492, gnl|xenTro1|scaffold_130 (224777-224645) | |
| 651-797, gnl|bosTau2|chr21 (11872364-11872218) | |
| 651-797, gnl|Hg17|chr15 (88432741-88432595) | |
| 651-797, gnl|Mm7|chr7 (75966511-75966365) | |
| 935-1087, gnl|bosTau2|chr21 (11871047-11870895) | |
| 935-1087, gnl|canFam2|chr3 (55934379-55934553) | |
| 935-1087, gnl|danRer3|chrUn (135982018-135982194) | |
| 935-1087, gnl|dasNov1|scaffold_15132 (13015-13190) | |
| 935-1087, gnl|echTel1|scaffold_238377 (2381-2207) | |
| 935-1087, gnl|fr1|chrUn (286334575-286334744) | |
| 935-1087, gnl|hg17|chr15 (88431340-88431514) | |
| 935-1087, gnl|Hg17|chr15 (88431499-88431347) | |
| 935-1087, gnl|loxAfr1|scaffold_4645 (81881-82055) | |
| 935-1087, gnl|mm7|chr7 (75965401-75965570) | |
| 935-1087, gnl|Mm7|chr7 (75965555-75965403) | |
| 935-1087, gnl|monDom2|scaffold_45 (10289389-10289214) | |
| 935-1087, gnl|oryCun1|scaffold_169449 (5762-5936) | |
| 935-1087, gnl|panTro1|chr16 (89360076-89360250) | |
| 935-1087, gnl|rheMac2|chr7 (69734270-69734444) | |
| 935-1087, gnl|rn3|chr1 (135957478-135957652) | |
| 935-1087, gnl|tetNig1|chr5 (2369322-2369496) | |
| 935-1087, gnl|xenTro1|scaffold_130 (226619-226440) | |
| 1198-1299, gnl|bosTau2|chr21 (11868263-11868162) | |
| 1198-1299, gnl|canFam2|chr3 (55932178-55932280) | |
| 1198-1299, gnl|danRer3|chrUn (135978853-135978955) | |
| 1198-1299, gnl|dasNov1|scaffold_15132 (11253-11355) | |
| 1198-1299, gnl|echTel1|scaffold_238377 (10963-10861) | |
| 1198-1299, gnl|fr1|chrUn (286334053-286334155) | |
| 1198-1299, gnl|hg17|chr15 (88429236-88429338) | |
| 1198-1299, gnl|Hg17|chr15 (88429336-88429235) | |
| 1198-1299, gnl|loxAfr1|scaffold_4645 (79224-79326) | |
| 1198-1299, gnl|mm7|chr7 (75963398-75963500) | |
| 1198-1299, gnl|Mm7|chr7 (75963498-75963397) | |
| 1198-1299, gnl|monDom2|scaffold_45 (10292339-10292237) | |
| 1198-1299, gnl|oryCun1|scaffold_169449 (4114-4216) | |
| 1198-1299, gnl|panTro1|chr16 (89357976-89358078) | |
| 1198-1299, gnl|rheMac2|chr7 (69732183-69732285) | |
| 1198-1299, gnl|rn3|chr1 (135955439-135955541) | |
| 1198-1299, gnl|tetNig1|chr5 (2368962-2369064) | |
| 1198-1299, gnl|xenTro1|scaffold_240 (591250-591169) | |
| 1383-1785, gnl|bosTau2|chr21 (11867381-11866966) | |
| 1383-1785, gnl|Hg17|chr15 (88428597-88428214) | |
| 1383-1785, gnl|Mm7|chr7 (75962811-75962446) |
| Expressed library(ies): 39 entry(ies) | More info |
| Expressed library(ies): 39 entry(ies) | Help | Less info |
| mas (2.10305) | |
| hlv (1.25331) | |
| cov (0.792917) | |
| cag (0.755972) | |
| duo (0.691204) | |
| cty (0.62448) | |
| cli (0.611247) | |
| fce (0.543183) | |
| ton (0.526501) | |
| nms (0.427716) | |
| hea (0.408998) | |
| ssp (0.406559) | |
| elu (0.385356) | |
| fty (0.351679) | |
| ill (0.351185) | |
| vin (0.332557) | |
| csp (0.322373) | |
| ctl (0.306138) | |
| cst (0.280073) | |
| ute (0.265569) | |
| cly (0.241284) | |
| ecc (0.23007) | |
| jca (0.22792) | |
| nbm (0.198649) | |
| col (0.195008) | |
| ldo (0.194005) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| nco (0.161734) | |
| eli (0.151814) | |
| nca (0.136874) | |
| lyg (0.133103) | |
| bla (0.124347) | |
| ebs (0.118301) | |
| med (0.116252) | |
| jej (0.0989218) |
| Expressed library(ies): 39 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (2.10305) | |
| hlv (1.25331) | |
| cov (0.792917) | |
| cag (0.755972) | |
| duo (0.691204) | |
| cty (0.62448) | |
| cli (0.611247) | |
| fce (0.543183) | |
| ton (0.526501) | |
| nms (0.427716) | |
| hea (0.408998) | |
| ssp (0.406559) | |
| elu (0.385356) | |
| fty (0.351679) | |
| ill (0.351185) | |
| vin (0.332557) | |
| csp (0.322373) | |
| ctl (0.306138) | |
| cst (0.280073) | |
| ute (0.265569) | |
| cly (0.241284) | |
| ecc (0.23007) | |
| jca (0.22792) | |
| nbm (0.198649) | |
| col (0.195008) | |
| ldo (0.194005) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| nco (0.161734) | |
| eli (0.151814) | |
| nca (0.136874) | |
| lyg (0.133103) | |
| bla (0.124347) | |
| ebs (0.118301) | |
| med (0.116252) | |
| jej (0.0989218) |