Ss1.1-Pig4-TMW8054F11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCGGGCAAGGAAAGCCGTATGTCTTCGACAGAGTGCTGCCTCCCAGCACGACCCAAGAGC AGGTTTACAATGCATGTGCAAAGCAAATTGTCAAAGATGTCCTTGAAGGTTATAATGGGA CAATTTTTGCATATGGACAGACTTCATCAGGAAAAACACACACCATGGAGGGGAAGCTCC ACGACCCTCAGCTCATGGGCATCATTCCAAGGATCGCACATGACATCTTTGACCATATCT ATTCCATGGATGAAAATCTGGAGTTCCACATCAAGGTTTCCTACTTTGAAATCTACTTGG ACAAAATCAGGGACTTACTGGATGTATCCAAGACAAACTTGGCTGTTCATGAAGATAAAA ACAGAGTCCCATATGTAAAGGGGTGCACTGAGCGGTTTGTGTCAAGCCCCGAGGAAGTCA TGGATGTGATAGATGAAGGCAAAGCAAACCGCCATGTGGCTGTAACAAACATGAATGAAC ACAGCTCTAGAAGTCACAGTATCTTCCTGATTAATATTAAACAAGAGAATGTAGAGACTG AAAAAAAACTCAGTGGAAAGCTGTATCTGGTTGATTTGGCTGGGAGCGAAAAGGTCAGCA AAACTGGTGCCGAGGGAGCTGTTCTCGACGAAGCGAAAAATATCAATAAGTCTTTGTCTG CTCTGGGAAACGTGATCTCTGCCTTGGCAGAAGGGACAAAAACACACGTGCCATACCGGG ACAGCAAAATGACTCGAATTCTTCAGGACTCTCTGGGAGGGAACTGTAGAACCACCATTG TGATTTGTTGTTCTCCCTCAGTCTTCAATGAAGCTGAAACCAAGTCAACACTAATGTTTG GACAAAGGGCTAAGACCATCAAAAATACAGTTTCTGTGAACCTGGAGCTGACAGCAGAAG AATGGAAGAAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCGGGCAAGGAAAGCCGTATGTCTTCGACAGAGTGCTGCCTCCCAGCACGACCCAAGAGC AGGTTTACAATGCATGTGCAAAGCAAATTGTCAAAGATGTCCTTGAAGGTTATAATGGGA CAATTTTTGCATATGGACAGACTTCATCAGGAAAAACACACACCATGGAGGGGAAGCTCC ACGACCCTCAGCTCATGGGCATCATTCCAAGGATCGCACATGACATCTTTGACCATATCT ATTCCATGGATGAAAATCTGGAGTTCCACATCAAGGTTTCCTACTTTGAAATCTACTTGG ACAAAATCAGGGACTTACTGGATGTATCCAAGACAAACTTGGCTGTTCATGAAGATAAAA ACAGAGTCCCATATGTAAAGGGGTGCACTGAGCGGTTTGTGTCAAGCCCCGAGGAAGTCA TGGATGTGATAGATGAAGGCAAAGCAAACCGCCATGTGGCTGTAACAAACATGAATGAAC ACAGCTCTAGAAGTCACAGTATCTTCCTGATTAATATTAAACAAGAGAATGTAGAGACTG AAAAAAAACTCAGTGGAAAGCTGTATCTGGTTGATTTGGCTGGGAGCGAAAAGGTCAGCA AAACTGGTGCCGAGGGAGCTGTTCTCGACGAAGCGAAAAATATCAATAAGTCTTTGTCTG CTCTGGGAAACGTGATCTCTGCCTTGGCAGAAGGGACAAAAACACACGTGCCATACCGGG ACAGCAAAATGACTCGAATTCTTCAGGACTCTCTGGGAGGGAACTGTAGAACCACCATTG TGATTTGTTGTTCTCCCTCAGTCTTCAATGAAGCTGAAACCAAGTCAACACTAATGTTTG GACAAAGGGCTAAGACCATCAAAAATACAGTTTCTGTGAACCTGGAGCTGACAGCAGAAG AATGGAAGAAGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 466-595, - strand, RNAz p=0.886698 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 466-595, - strand, RNAz p=0.886698 |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 169-277, gnl|bosTau2|chr2 (33575349-33575457) | |
| 169-277, gnl|canFam2|chr19 (53620951-53621098) | |
| 169-277, gnl|danRer3|chr15 (23618212-23618349) | |
| 169-277, gnl|dasNov1|scaffold_62020 (4587-4733) | |
| 169-277, gnl|echTel1|scaffold_322132 (195348-195489) | |
| 169-277, gnl|fr1|chrUn (234902902-234902792) | |
| 169-277, gnl|galGal2|chr7 (35460253-35460396) | |
| 169-277, gnl|hg17|chr2 (149619273-149619419) | |
| 169-277, gnl|Hg17|chr2 (149619304-149619412) | |
| 169-277, gnl|loxAfr1|scaffold_1106 (104963-104820) | |
| 169-277, gnl|mm7|chr2 (49695936-49696077) | |
| 169-277, gnl|Mm7|chr2 (49695962-49696070) | |
| 169-277, gnl|oryCun1|scaffold_208495 (238576-238429) | |
| 169-277, gnl|panTro1|chr13 (38675070-38675216) | |
| 169-277, gnl|rheMac2|chr12 (12600939-12601085) | |
| 169-277, gnl|rn3|chr3 (30567272-30567412) | |
| 169-277, gnl|tetNig1|chrUn_random (83867036-83866927) | |
| 169-277, gnl|xenTro1|scaffold_456 (299746-299889) | |
| 466-595, gnl|bosTau2|chr2 (33585495-33585624) | |
| 466-595, gnl|canFam2|chr19 (53632516-53632669) | |
| 466-595, gnl|danRer3|chr15 (23620307-23620436) | |
| 466-595, gnl|dasNov1|scaffold_4883 (51159-51312) | |
| 466-595, gnl|echTel1|scaffold_305495 (18347-18500) | |
| 466-595, gnl|fr1|chrUn (234901360-234901219) | |
| 466-595, gnl|galGal2|chr7 (35465200-35465353) | |
| 466-595, gnl|hg17|chr2 (149628909-149629062) | |
| 466-595, gnl|Hg17|chr2 (149628918-149629047) | |
| 466-595, gnl|loxAfr1|scaffold_1106 (97984-97831) | |
| 466-595, gnl|mm7|chr2 (49705279-49705431) | |
| 466-595, gnl|Mm7|chr2 (49705288-49705417) | |
| 466-595, gnl|monDom2|scaffold_2 (39249629-39249778) | |
| 466-595, gnl|oryCun1|scaffold_208495 (226381-226228) | |
| 466-595, gnl|panTro1|chr13 (38685302-38685455) | |
| 466-595, gnl|rheMac2|chr12 (12610733-12610886) | |
| 466-595, gnl|rn3|chr3 (30576426-30576579) | |
| 466-595, gnl|tetNig1|chrUn_random (83866198-83866068) | |
| 466-595, gnl|xenTro1|scaffold_456 (304398-304539) | |
| 699-848, gnl|bosTau2|chr2 (33588681-33588830) | |
| 699-848, gnl|canFam2|chr19 (53635663-53635847) | |
| 699-848, gnl|danRer3|chr15 (23622965-23623135) | |
| 699-848, gnl|dasNov1|scaffold_4883 (55857-56034) | |
| 699-848, gnl|echTel1|scaffold_322132 (211071-211249) | |
| 699-848, gnl|fr1|chrUn (234900058-234899902) | |
| 699-848, gnl|galGal2|chr7 (35465951-35466139) | |
| 699-848, gnl|hg17|chr2 (149632313-149632490) | |
| 699-848, gnl|Hg17|chr2 (149632336-149632485) | |
| 699-848, gnl|loxAfr1|scaffold_1106 (93920-93740) | |
| 699-848, gnl|mm7|chr2 (49708245-49708422) | |
| 699-848, gnl|Mm7|chr2 (49708268-49708417) | |
| 699-848, gnl|monDom2|scaffold_2 (39252803-39252986) | |
| 699-848, gnl|oryCun1|scaffold_208495 (222573-222396) | |
| 699-848, gnl|panTro1|chr13 (38688721-38688898) | |
| 699-848, gnl|rheMac2|chr12 (12613817-12613994) | |
| 699-848, gnl|rn3|chr3 (30579213-30579390) | |
| 699-848, gnl|tetNig1|chrUn_random (83865835-83865683) | |
| 699-848, gnl|xenTro1|scaffold_456 (305823-305995) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 169-277, gnl|bosTau2|chr2 (33575349-33575457) | |
| 169-277, gnl|canFam2|chr19 (53620951-53621098) | |
| 169-277, gnl|danRer3|chr15 (23618212-23618349) | |
| 169-277, gnl|dasNov1|scaffold_62020 (4587-4733) | |
| 169-277, gnl|echTel1|scaffold_322132 (195348-195489) | |
| 169-277, gnl|fr1|chrUn (234902902-234902792) | |
| 169-277, gnl|galGal2|chr7 (35460253-35460396) | |
| 169-277, gnl|hg17|chr2 (149619273-149619419) | |
| 169-277, gnl|Hg17|chr2 (149619304-149619412) | |
| 169-277, gnl|loxAfr1|scaffold_1106 (104963-104820) | |
| 169-277, gnl|mm7|chr2 (49695936-49696077) | |
| 169-277, gnl|Mm7|chr2 (49695962-49696070) | |
| 169-277, gnl|oryCun1|scaffold_208495 (238576-238429) | |
| 169-277, gnl|panTro1|chr13 (38675070-38675216) | |
| 169-277, gnl|rheMac2|chr12 (12600939-12601085) | |
| 169-277, gnl|rn3|chr3 (30567272-30567412) | |
| 169-277, gnl|tetNig1|chrUn_random (83867036-83866927) | |
| 169-277, gnl|xenTro1|scaffold_456 (299746-299889) | |
| 466-595, gnl|bosTau2|chr2 (33585495-33585624) | |
| 466-595, gnl|canFam2|chr19 (53632516-53632669) | |
| 466-595, gnl|danRer3|chr15 (23620307-23620436) | |
| 466-595, gnl|dasNov1|scaffold_4883 (51159-51312) | |
| 466-595, gnl|echTel1|scaffold_305495 (18347-18500) | |
| 466-595, gnl|fr1|chrUn (234901360-234901219) | |
| 466-595, gnl|galGal2|chr7 (35465200-35465353) | |
| 466-595, gnl|hg17|chr2 (149628909-149629062) | |
| 466-595, gnl|Hg17|chr2 (149628918-149629047) | |
| 466-595, gnl|loxAfr1|scaffold_1106 (97984-97831) | |
| 466-595, gnl|mm7|chr2 (49705279-49705431) | |
| 466-595, gnl|Mm7|chr2 (49705288-49705417) | |
| 466-595, gnl|monDom2|scaffold_2 (39249629-39249778) | |
| 466-595, gnl|oryCun1|scaffold_208495 (226381-226228) | |
| 466-595, gnl|panTro1|chr13 (38685302-38685455) | |
| 466-595, gnl|rheMac2|chr12 (12610733-12610886) | |
| 466-595, gnl|rn3|chr3 (30576426-30576579) | |
| 466-595, gnl|tetNig1|chrUn_random (83866198-83866068) | |
| 466-595, gnl|xenTro1|scaffold_456 (304398-304539) | |
| 699-848, gnl|bosTau2|chr2 (33588681-33588830) | |
| 699-848, gnl|canFam2|chr19 (53635663-53635847) | |
| 699-848, gnl|danRer3|chr15 (23622965-23623135) | |
| 699-848, gnl|dasNov1|scaffold_4883 (55857-56034) | |
| 699-848, gnl|echTel1|scaffold_322132 (211071-211249) | |
| 699-848, gnl|fr1|chrUn (234900058-234899902) | |
| 699-848, gnl|galGal2|chr7 (35465951-35466139) | |
| 699-848, gnl|hg17|chr2 (149632313-149632490) | |
| 699-848, gnl|Hg17|chr2 (149632336-149632485) | |
| 699-848, gnl|loxAfr1|scaffold_1106 (93920-93740) | |
| 699-848, gnl|mm7|chr2 (49708245-49708422) | |
| 699-848, gnl|Mm7|chr2 (49708268-49708417) | |
| 699-848, gnl|monDom2|scaffold_2 (39252803-39252986) | |
| 699-848, gnl|oryCun1|scaffold_208495 (222573-222396) | |
| 699-848, gnl|panTro1|chr13 (38688721-38688898) | |
| 699-848, gnl|rheMac2|chr12 (12613817-12613994) | |
| 699-848, gnl|rn3|chr3 (30579213-30579390) | |
| 699-848, gnl|tetNig1|chrUn_random (83865835-83865683) | |
| 699-848, gnl|xenTro1|scaffold_456 (305823-305995) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| pgl (0.35545) | |
| spc (0.340097) | |
| cbe (0.239234) | |
| fcc (0.197785) | |
| hyp (0.142837) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pgl (0.35545) | |
| spc (0.340097) | |
| cbe (0.239234) | |
| fcc (0.197785) | |
| hyp (0.142837) |