Non-Coding RNA Search

Ss1.1-Pig4-TMW8054G04.5

Sequence:


               
               GAAATGAGTCGACGGATGAGTTTTTTGAGCTGTCGTTCCGGATCTCCGGAGCTGGCCCGG
GAGCCTCGGGGACCCAGGGAGCGGAGGGAGGATGGCTCTGCCGCCCCAGACCCCGAGCAG
ATTGACTTCATCGACAGCCACGTCCCTGGGGAGGAGGAAGATCGAGGTGCTGGCGAGGAG
CAGCGGCCACCAGAATCGAGCCTCTCCCTGCCCTGCCCTCTGCTTCCCCAGAGGGTGGAT
CCTAATCTCCCCCCCCCCCCCCGCTAGGGGGGGCTAAATTATCTATATTTTGTAGAGAGA
ACTCTATATTTGTAGGGGATGAGGGGCCCAGGCTGGGTCCCTGTCTCTTGTATAAATTGT
ACAGATCGTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAATGAGTCGACGGATGAGTTTTTTGAGCTGTCGTTCCGGATCTCCGGAGCTGGCCCGG
GAGCCTCGGGGACCCAGGGAGCGGAGGGAGGATGGCTCTGCCGCCCCAGACCCCGAGCAG
ATTGACTTCATCGACAGCCACGTCCCTGGGGAGGAGGAAGATCGAGGTGCTGGCGAGGAG
CAGCGGCCACCAGAATCGAGCCTCTCCCTGCCCTGCCCTCTGCTTCCCCAGAGGGTGGAT
CCTAATCTCCCCCCCCCCCCCCGCTAGGGGGGGCTAAATTATCTATATTTTGTAGAGAGA
ACTCTATATTTGTAGGGGATGAGGGGCCCAGGCTGGGTCCCTGTCTCTTGTATAAATTGT
ACAGATCGTGAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               251-370, - strand, RNAz p=0.994089

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               251-370, - strand, RNAz p=0.994089

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               310-394, + strand, RNAmicro p=0.945421

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               310-394, + strand, RNAmicro p=0.945421

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               274-370, DB059478 TESTI2 Homo sapiens cDNA clone TESTI2052437 5', mRNA 
(dbj|DB059478.1|), blast E-value=0.0000000000001, identity=88.78% 
               

               
               274-370, DB357151 HEMBA1 Homo sapiens cDNA clone HEMBA1004664 3', mRNA 
(dbj|DB357151.1|), blast E-value=0.0000000000001, identity=88.78% 
               

               
               274-370, DB363484 NT2RM4 Homo sapiens cDNA clone NT2RM4002418 3', mRNA 
(dbj|DB363484.1|), blast E-value=0.0000000000001, identity=88.78% 
               

               
               274-370, 732207 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CB466661.1|), 
blast E-value=7e-40, identity=97.96% 
               

               
               274-370, BovGen_10262 normal cattle brain Bos taurus cDNA clone 
(gb|CO881937.1|), blast E-value=7e-40, identity=97.96% 
               

               
               274-335, GL-Cf-13293 GLGC-LIB0001-cf Canis familiaris Normalized Mixed 
(gb|DN756497.1|), blast E-value=1e-16, identity=95.24%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               274-370, DB059478 TESTI2 Homo sapiens cDNA clone TESTI2052437 5', mRNA 
(dbj|DB059478.1|), blast E-value=0.0000000000001, identity=88.78% 
               

               
               274-370, DB357151 HEMBA1 Homo sapiens cDNA clone HEMBA1004664 3', mRNA 
(dbj|DB357151.1|), blast E-value=0.0000000000001, identity=88.78% 
               

               
               274-370, DB363484 NT2RM4 Homo sapiens cDNA clone NT2RM4002418 3', mRNA 
(dbj|DB363484.1|), blast E-value=0.0000000000001, identity=88.78% 
               

               
               274-370, 732207 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CB466661.1|), 
blast E-value=7e-40, identity=97.96% 
               

               
               274-370, BovGen_10262 normal cattle brain Bos taurus cDNA clone 
(gb|CO881937.1|), blast E-value=7e-40, identity=97.96% 
               

               
               274-335, GL-Cf-13293 GLGC-LIB0001-cf Canis familiaris Normalized Mixed 
(gb|DN756497.1|), blast E-value=1e-16, identity=95.24%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK128189, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK128189, -

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               251-370, gnl|bosTau2|chr25 (32390491-32390611)
               

               
               251-370, gnl|canFam2|chr6 (12119602-12119214)
               

               
               251-370, gnl|dasNov1|scaffold_13425 (38708-38352)
               

               
               251-370, gnl|hg17|chr7 (99816935-99817317)
               

               
               251-370, gnl|Hg17|chr7 (99817053-99816934)
               

               
               251-370, gnl|mm7|chr5 (136558504-136558202)
               

               
               251-370, gnl|Mm7|chr5 (136558387-136558503)
               

               
               251-370, gnl|monDom2|scaffold_66 (2431465-2431805)
               

               
               251-370, gnl|oryCun1|scaffold_202294 (42698-43083)
               

               
               251-370, gnl|panTro1|chr6 (101591810-101592192)
               

               
               251-370, gnl|rn3|chr12 (19694411-19694077)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               251-370, gnl|bosTau2|chr25 (32390491-32390611)
               

               
               251-370, gnl|canFam2|chr6 (12119602-12119214)
               

               
               251-370, gnl|dasNov1|scaffold_13425 (38708-38352)
               

               
               251-370, gnl|hg17|chr7 (99816935-99817317)
               

               
               251-370, gnl|Hg17|chr7 (99817053-99816934)
               

               
               251-370, gnl|mm7|chr5 (136558504-136558202)
               

               
               251-370, gnl|Mm7|chr5 (136558387-136558503)
               

               
               251-370, gnl|monDom2|scaffold_66 (2431465-2431805)
               

               
               251-370, gnl|oryCun1|scaffold_202294 (42698-43083)
               

               
               251-370, gnl|panTro1|chr6 (101591810-101592192)
               

               
               251-370, gnl|rn3|chr12 (19694411-19694077)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               csp (0.161186)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)

	274-370, DB059478 TESTI2 Homo sapiens cDNA clone TESTI2052437 5', mRNA (dbj\|DB059478.1\|), blast E-value=0.0000000000001, identity=88.78%
	274-370, DB357151 HEMBA1 Homo sapiens cDNA clone HEMBA1004664 3', mRNA (dbj\|DB357151.1\|), blast E-value=0.0000000000001, identity=88.78%
	274-370, DB363484 NT2RM4 Homo sapiens cDNA clone NT2RM4002418 3', mRNA (dbj\|DB363484.1\|), blast E-value=0.0000000000001, identity=88.78%
	274-370, 732207 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb\|CB466661.1\|), blast E-value=7e-40, identity=97.96%
	274-370, BovGen_10262 normal cattle brain Bos taurus cDNA clone (gb\|CO881937.1\|), blast E-value=7e-40, identity=97.96%
	274-335, GL-Cf-13293 GLGC-LIB0001-cf Canis familiaris Normalized Mixed (gb\|DN756497.1\|), blast E-value=1e-16, identity=95.24%

	251-370, gnl\|bosTau2\|chr25 (32390491-32390611)
	251-370, gnl\|canFam2\|chr6 (12119602-12119214)
	251-370, gnl\|dasNov1\|scaffold_13425 (38708-38352)
	251-370, gnl\|hg17\|chr7 (99816935-99817317)
	251-370, gnl\|Hg17\|chr7 (99817053-99816934)
	251-370, gnl\|mm7\|chr5 (136558504-136558202)
	251-370, gnl\|Mm7\|chr5 (136558387-136558503)
	251-370, gnl\|monDom2\|scaffold_66 (2431465-2431805)
	251-370, gnl\|oryCun1\|scaffold_202294 (42698-43083)
	251-370, gnl\|panTro1\|chr6 (101591810-101592192)
	251-370, gnl\|rn3\|chr12 (19694411-19694077)