Non-Coding RNA Search

Ss1.1-Pig4-TMW8054G11.3

Sequence:


               
               TTTATGGGAGTTGAAGCACAGTATGAAAAGGGTTTTTGTCTCATGTTGACCTTGTTTAGT
CACATTAACGCACACATCGGTTCCAGGCCCCATTCCATTCTCCGAACATCTTCTGACACA
CTGATAGTGCTGAGCAGAGCAAGGTTGGGCTCACTCTGCTGGCAGAGCCCCGGCACTCGG
GAGGCCCTCGTTTCAGGGACAGCTGCTTCTCCTGGGCTGGGCTCTTCTCTCCGAGCCCCG
CTGCCCAGCTGGAACCAGGGACACTGCCTGAGTCCAACGCCAGTATCTATTTTCCAGAAA
ACGGGCAATGCTGTGAGAGCCATTGGAAGACTGTCCTCTATGGCAATGATCTCAGGGCTC
AGTGGCAGGAAATCCTCAACAGGGTCACCAACCAGCCCGCTGAATGCAGAAAAATTAGAA
TCTGAAGAAGATGTCTCCCAAGCTTTCCTTGAGGCCGTCGCTGAGGAAAAGCCCCATGTA
AAACCCTATTTTTCTAAGACCATTCGTGATTTAGAAGTTGTGGAGGGAAGCGCTGCTAGA
TTTGACTGCAAGATTGAAGGATACCCAGACCCTGAGGTTGTCTGGTTCAAAGATGACCAG
TCAATCAGGGAGTCCCGCCACTTCCAGATAGACTACGATGAGGATGGGAACTGCTCTTTA
ATCATTAGCGATGTCTGCGGTGATGATGATGCCAAGTACACCTGCAAGGCTGTCAACAGT
CTTGGAGAAGCCACCTGCACAGCAGAGCTCATTGTGGAAACCATGGAGGAAGGAGAAGGG
GAAGGGGAAGAAGAAGAGGAGGAAGAGTGAACCAAAGCCAAAGAGAAGCAGTTTCTAAGT
CAGATTACAAAGACTATTTCTCTAAAGCTCAAAAAGAAAAAGAAAAAAAATCCAAGGTAG
TAAAAGCACCTAGTGTGATAGATTATTTAGTTAGGTCATTGGGGGGTTGACTCTTCAGCA
ACAGTGGTTGATACCCAGCAGCGTTACTGATGGGCATTAATTTGAATTAGCTGGCATCTT
AAGATACTAGTCTAGCTAGATTTCATTTGGGGAAATCACCAGTAACTTGCCTGACCAGTT
GATACTAGAGAAAAAGTAACCAAAAGGAAGATATATCTGGGCAAAGTCAAATTCCCCAAC
TGAAGGCACTCGTGAAAAATAAGGCCCTGTGGTCTCAGCTCTGCCCAGAGAGTCCCTAGA
GGTGGGGGTCTCTCCCAGCTCCCGCTCCAGAGACCAGGGTCTTCTCCAGCCCTGCAGCCC
TTCATTCTGCAGGCGGTCGAGCCATTTTCCCTTACAAGGCACATTTTATTCCAGAGTATC
CTGCAGACATTCAAACTTTTCACTTCCCTGCCCTGTTCTACCTACGAGTTTTCTGGATCT
GAACTTGCCATGAGTTTAAGGACTAGGGACATTACACTTCTCAGAGTCCGAAGACACGTC
CCCTGCTCCTGGATGACTGGCTTCCTTAGGCAAATACAATCTCCTTTCTTCCCAAATTAG
TAGGGAATCTAAACTTAGCCCCTCTCTTAAGATGTCTAGTAGCTTCAGACATTTTGATAA
GAACCTATGACAAAGAAATTCCTTGCTAATGTGCTTTTTTCCTGAAACCAGGATTCATAT
TTGTGCTGTTTTAGAATATCAGCTCTGCATGTGTGGTAGAGATTTTTGTGTTTGAATGTA
TGAAAAACCGTTTGCTGAAAAGTTAGTCTTTATTTATTGGCCACTATGAGAGATTTCAAC
TGAAGAGCTGTAGAAGTCCACATCCTTTGGAATCTCCTTCAGGATAGTCTGGGTTTAATA
TACCTTCATTCTGAACATACTCCAGACAACCTGACCCACCTTATGGGTTCCACGAGGTTT
TTCTCCTTGAACGTACATCAATCATGCCTTGCCCCCAACCCTAAAATATATTCTTAGACC
CGATAAATGCACTCAGACTTGCATCTTTAGGAATTTTTAACTTTCACTACATTGGCACTT
AAAATTTCCTTTATGAAACTTTTTGAAGGTCATAAACAAAGACCATAAACTGATATGCCT
AATACATTTCCTCTGCGTGTGTGTGTGTGTATAACATTCCAAATACTTTTTTCTTTTCCA
CTGTTTGTAAAGTACAACAGTTTACTATTTCAAGGGACTTTTTAATAGTTCCTTAAGAAC
CAATTTTAAATGACTTCAGTGCAATTCTACACAGTATCAACATTAGAATTTTGGTGTTAC
TTAAGTCTTATGTTACTTTCCATTCTATTTTTACCTGCTTTTTGCTGCTAGTTTCAAACT
GCCAGTATTTTTCCTTTTGCTTTTTAAACAGTTACAATATTTTTCATAATAGCCACAGTA
TTTGCCACAGTTAAATATAATAAAGTGTTTTAAATTTGATTTAGAGCAGTCAAAGCTTTT
CCTCACCACTTTCAATTGTGTTTAGACTATAATCTTTTTGTGCGTGTTATGTTGTATATG
TGCGCGCATGTGTGGTGTGTATGTTTGTTTACAGGTTTTGATGCCTTCTTGAAATTGTTA
ATGTTCTCCTAGTTTATTATGCCATCAGAATGGTAAATGAGAACACTACAACTGTAGTTA
GCTCACAATTTTTAAATAAAAGATACCACAGTGCAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTATGGGAGTTGAAGCACAGTATGAAAAGGGTTTTTGTCTCATGTTGACCTTGTTTAGT
CACATTAACGCACACATCGGTTCCAGGCCCCATTCCATTCTCCGAACATCTTCTGACACA
CTGATAGTGCTGAGCAGAGCAAGGTTGGGCTCACTCTGCTGGCAGAGCCCCGGCACTCGG
GAGGCCCTCGTTTCAGGGACAGCTGCTTCTCCTGGGCTGGGCTCTTCTCTCCGAGCCCCG
CTGCCCAGCTGGAACCAGGGACACTGCCTGAGTCCAACGCCAGTATCTATTTTCCAGAAA
ACGGGCAATGCTGTGAGAGCCATTGGAAGACTGTCCTCTATGGCAATGATCTCAGGGCTC
AGTGGCAGGAAATCCTCAACAGGGTCACCAACCAGCCCGCTGAATGCAGAAAAATTAGAA
TCTGAAGAAGATGTCTCCCAAGCTTTCCTTGAGGCCGTCGCTGAGGAAAAGCCCCATGTA
AAACCCTATTTTTCTAAGACCATTCGTGATTTAGAAGTTGTGGAGGGAAGCGCTGCTAGA
TTTGACTGCAAGATTGAAGGATACCCAGACCCTGAGGTTGTCTGGTTCAAAGATGACCAG
TCAATCAGGGAGTCCCGCCACTTCCAGATAGACTACGATGAGGATGGGAACTGCTCTTTA
ATCATTAGCGATGTCTGCGGTGATGATGATGCCAAGTACACCTGCAAGGCTGTCAACAGT
CTTGGAGAAGCCACCTGCACAGCAGAGCTCATTGTGGAAACCATGGAGGAAGGAGAAGGG
GAAGGGGAAGAAGAAGAGGAGGAAGAGTGAACCAAAGCCAAAGAGAAGCAGTTTCTAAGT
CAGATTACAAAGACTATTTCTCTAAAGCTCAAAAAGAAAAAGAAAAAAAATCCAAGGTAG
TAAAAGCACCTAGTGTGATAGATTATTTAGTTAGGTCATTGGGGGGTTGACTCTTCAGCA
ACAGTGGTTGATACCCAGCAGCGTTACTGATGGGCATTAATTTGAATTAGCTGGCATCTT
AAGATACTAGTCTAGCTAGATTTCATTTGGGGAAATCACCAGTAACTTGCCTGACCAGTT
GATACTAGAGAAAAAGTAACCAAAAGGAAGATATATCTGGGCAAAGTCAAATTCCCCAAC
TGAAGGCACTCGTGAAAAATAAGGCCCTGTGGTCTCAGCTCTGCCCAGAGAGTCCCTAGA
GGTGGGGGTCTCTCCCAGCTCCCGCTCCAGAGACCAGGGTCTTCTCCAGCCCTGCAGCCC
TTCATTCTGCAGGCGGTCGAGCCATTTTCCCTTACAAGGCACATTTTATTCCAGAGTATC
CTGCAGACATTCAAACTTTTCACTTCCCTGCCCTGTTCTACCTACGAGTTTTCTGGATCT
GAACTTGCCATGAGTTTAAGGACTAGGGACATTACACTTCTCAGAGTCCGAAGACACGTC
CCCTGCTCCTGGATGACTGGCTTCCTTAGGCAAATACAATCTCCTTTCTTCCCAAATTAG
TAGGGAATCTAAACTTAGCCCCTCTCTTAAGATGTCTAGTAGCTTCAGACATTTTGATAA
GAACCTATGACAAAGAAATTCCTTGCTAATGTGCTTTTTTCCTGAAACCAGGATTCATAT
TTGTGCTGTTTTAGAATATCAGCTCTGCATGTGTGGTAGAGATTTTTGTGTTTGAATGTA
TGAAAAACCGTTTGCTGAAAAGTTAGTCTTTATTTATTGGCCACTATGAGAGATTTCAAC
TGAAGAGCTGTAGAAGTCCACATCCTTTGGAATCTCCTTCAGGATAGTCTGGGTTTAATA
TACCTTCATTCTGAACATACTCCAGACAACCTGACCCACCTTATGGGTTCCACGAGGTTT
TTCTCCTTGAACGTACATCAATCATGCCTTGCCCCCAACCCTAAAATATATTCTTAGACC
CGATAAATGCACTCAGACTTGCATCTTTAGGAATTTTTAACTTTCACTACATTGGCACTT
AAAATTTCCTTTATGAAACTTTTTGAAGGTCATAAACAAAGACCATAAACTGATATGCCT
AATACATTTCCTCTGCGTGTGTGTGTGTGTATAACATTCCAAATACTTTTTTCTTTTCCA
CTGTTTGTAAAGTACAACAGTTTACTATTTCAAGGGACTTTTTAATAGTTCCTTAAGAAC
CAATTTTAAATGACTTCAGTGCAATTCTACACAGTATCAACATTAGAATTTTGGTGTTAC
TTAAGTCTTATGTTACTTTCCATTCTATTTTTACCTGCTTTTTGCTGCTAGTTTCAAACT
GCCAGTATTTTTCCTTTTGCTTTTTAAACAGTTACAATATTTTTCATAATAGCCACAGTA
TTTGCCACAGTTAAATATAATAAAGTGTTTTAAATTTGATTTAGAGCAGTCAAAGCTTTT
CCTCACCACTTTCAATTGTGTTTAGACTATAATCTTTTTGTGCGTGTTATGTTGTATATG
TGCGCGCATGTGTGGTGTGTATGTTTGTTTACAGGTTTTGATGCCTTCTTGAAATTGTTA
ATGTTCTCCTAGTTTATTATGCCATCAGAATGGTAAATGAGAACACTACAACTGTAGTTA
GCTCACAATTTTTAAATAAAAGATACCACAGTGCAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61825607|ref|XP_590786.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61825607|ref|XP_590786.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               754-863, + strand, RNAz p=0.629638
               

               
               1181-1278, - strand, RNAz p=0.918596

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               754-863, + strand, RNAz p=0.629638
               

               
               1181-1278, - strand, RNAz p=0.918596

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-427, gnl|bosTau2|chr1 (41679949-41680369)
               

               
               1-427, gnl|Hg17|chr3 (124822176-124821744)
               

               
               1-427, gnl|Mm7|chr16 (34669570-34669971)
               


               
               555-2615, gnl|bosTau2|chr1 (41684495-41686544)
               

               
               555-2615, gnl|Hg17|chr3 (124815891-124813847)
               

               
               555-2615, gnl|Mm7|chr16 (34675036-34677190)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-427, gnl|bosTau2|chr1 (41679949-41680369)
               

               
               1-427, gnl|Hg17|chr3 (124822176-124821744)
               

               
               1-427, gnl|Mm7|chr16 (34669570-34669971)
               


               
               555-2615, gnl|bosTau2|chr1 (41684495-41686544)
               

               
               555-2615, gnl|Hg17|chr3 (124815891-124813847)
               

               
               555-2615, gnl|Mm7|chr16 (34675036-34677190)

Expressed library(ies): 47 entry(ies)

More info

Expressed library(ies): 47 entry(ies)

Help | Less info


               
               bla (4.4765)
               

               
               lin (3.05766)
               

               
               cut (2.20901)
               

               
               sin (1.57453)
               

               
               pro (1.02407)
               

               
               spl (1.00229)
               

               
               nco (0.970403)
               

               
               eje (0.889504)
               

               
               nje (0.8296)
               

               
               rec (0.692281)
               

               
               lyg (0.665513)
               

               
               sag (0.548145)
               

               
               ova (0.516529)
               

               
               tra (0.492368)
               

               
               mga (0.480615)
               

               
               mgp (0.461361)
               

               
               liv (0.438853)
               

               
               pty (0.428143)
               

               
               cst (0.420109)
               

               
               aor (0.390549)
               

               
               ret (0.3862)
               

               
               elu (0.385356)
               

               
               cmu (0.372787)
               

               
               sto (0.359648)
               

               
               cki (0.330469)
               

               
               nmm (0.265604)
               

               
               kid (0.259471)
               

               
               pan (0.23596)
               

               
               cty (0.20816)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               spc (0.113366)

Expressed library(ies): 47 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (4.4765)
               

               
               lin (3.05766)
               

               
               cut (2.20901)
               

               
               sin (1.57453)
               

               
               pro (1.02407)
               

               
               spl (1.00229)
               

               
               nco (0.970403)
               

               
               eje (0.889504)
               

               
               nje (0.8296)
               

               
               rec (0.692281)
               

               
               lyg (0.665513)
               

               
               sag (0.548145)
               

               
               ova (0.516529)
               

               
               tra (0.492368)
               

               
               mga (0.480615)
               

               
               mgp (0.461361)
               

               
               liv (0.438853)
               

               
               pty (0.428143)
               

               
               cst (0.420109)
               

               
               aor (0.390549)
               

               
               ret (0.3862)
               

               
               elu (0.385356)
               

               
               cmu (0.372787)
               

               
               sto (0.359648)
               

               
               cki (0.330469)
               

               
               nmm (0.265604)
               

               
               kid (0.259471)
               

               
               pan (0.23596)
               

               
               cty (0.20816)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               spc (0.113366)

	754-863, + strand, RNAz p=0.629638
	1181-1278, - strand, RNAz p=0.918596

	1-427, gnl\|bosTau2\|chr1 (41679949-41680369)
	1-427, gnl\|Hg17\|chr3 (124822176-124821744)
	1-427, gnl\|Mm7\|chr16 (34669570-34669971)

	555-2615, gnl\|bosTau2\|chr1 (41684495-41686544)
	555-2615, gnl\|Hg17\|chr3 (124815891-124813847)
	555-2615, gnl\|Mm7\|chr16 (34675036-34677190)

	bla (4.4765)
	lin (3.05766)
	cut (2.20901)
	sin (1.57453)
	pro (1.02407)
	spl (1.00229)
	nco (0.970403)
	eje (0.889504)
	nje (0.8296)
	rec (0.692281)
	lyg (0.665513)
	sag (0.548145)
	ova (0.516529)
	tra (0.492368)
	mga (0.480615)
	mgp (0.461361)
	liv (0.438853)
	pty (0.428143)
	cst (0.420109)
	aor (0.390549)
	ret (0.3862)
	elu (0.385356)
	cmu (0.372787)
	sto (0.359648)
	cki (0.330469)
	nmm (0.265604)
	kid (0.259471)
	pan (0.23596)
	cty (0.20816)
	mgm (0.180343)
	gul (0.177588)
	mcp (0.170648)
	eye (0.170503)
	cje (0.165235)
	csp (0.161186)
	lun (0.150489)
	ski (0.146735)
	csk (0.140746)
	che (0.136314)
	pla (0.133672)
	ute (0.132784)
	cov (0.132153)
	sug (0.127291)
	thg (0.126791)
	cly (0.120642)
	eru (0.120048)
	spc (0.113366)