Ss1.1-Pig4-TMW8054G13.3
|
CGCCCGCCGCCCGCGCCGCCATGGGGGTAGAGGGCTGCACCAAGTGCATCAAGTACCTGC
TCTTCGTCTTCAATTTCGTCTTCTGGCTGGCTGGAGGCGTGATCCTGGGCGTGGCCCTGT
GGCTTCGCCACGACCCCCAGACTACCAGCCTCCTCTACCTGGAGCTCGGAGACAAGCCCG
CACCCAATACCTTCTATGTGGGCATCTACATCCTCATCGCTGTGGGTGCTGTGATGATGT
TTGTGGGGTTCCTGGGCTGCTACGGGGCCATCCAGGAGTCACAGTGCTTGCTGGGGACGT
TCTTCACCTGCCTCGTGATCCTCTTTGCCTGTGAGGTGGCCGCCGGCATCTGGGGTTTCG
TCAACAAGGACCAGATCGCCAAGGACGTGAAGCAGTTCTACGACCAGGCCTTGCAGCAGG
CCATAGTGGACGACGACGCCAACAACGCCAAGGCCGTGGTGAAGACTTTCCACGAGACGC
TCAACTGCTGCGGCTCCAACACGCTGACCACGCTGACCACCTCTGTGCTCAAGAACAGCC
TGTGCCCCTCGGGTGGCAACATCATCAGCAACTTGATGAAGGAGGACTGCCACAGCAAGA
TTGACGAGCTCTTCTCGGGGAAGCTGTACCTCATTGGCATCGCAGCCATTGTGGTCGCTG
TGATCATGATCTTCGAGATGATCCTGAGCATGGTACTGTGCTGTGGCATCCGGAACAGCT
CGGTGTACTGAGGCCCCGGCCACCGAGGCCGCAGGGGGGCCGCCGCCCCCCGCGGTGCCC
CCAGAGTGACCGGATACTTCTGAGAAGGGCGGTCAGCACCTGTGTATATAACTTCCTGAT
ATCACCGCTACACTGATCAGCCTTTACTTTTGAGGTCTTGTTCCTGTCCTCAAGCTCCCT
GTTACTTTTGGGGCCGCCGTCACCCGTAGGTGGCATGTGAGTGGGCCGTGGGGACTCTAG
GGCAGGGGCCCCCTCTGCTTCCGGGGCTGCTTGGGGCCTCTGCCTGCTCAGCCAGGCCTC
TCCCGGGGGCCACGAGGGCCCTACGGCCCAGCTGCGTCCTCCCACCCAGCCGACCCCGTG
GGCTGCGCGCTCGCCCAGCCCTTTTTAATCCTTGTTTCTTTCCGGCCGCCTGTCCTGAGA
GCCGGGTCTCCGAGCAGCCTTACGCCTCTGATGCACCTCTCCTTTCTAACGCGTCACTTT
CGACTGTAATTACATCCTCAAAGTCATTCAATAAAGAAAGAAGAAACAGGCATGCTAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CGCCCGCCGCCCGCGCCGCCATGGGGGTAGAGGGCTGCACCAAGTGCATCAAGTACCTGC
TCTTCGTCTTCAATTTCGTCTTCTGGCTGGCTGGAGGCGTGATCCTGGGCGTGGCCCTGT
GGCTTCGCCACGACCCCCAGACTACCAGCCTCCTCTACCTGGAGCTCGGAGACAAGCCCG
CACCCAATACCTTCTATGTGGGCATCTACATCCTCATCGCTGTGGGTGCTGTGATGATGT
TTGTGGGGTTCCTGGGCTGCTACGGGGCCATCCAGGAGTCACAGTGCTTGCTGGGGACGT
TCTTCACCTGCCTCGTGATCCTCTTTGCCTGTGAGGTGGCCGCCGGCATCTGGGGTTTCG
TCAACAAGGACCAGATCGCCAAGGACGTGAAGCAGTTCTACGACCAGGCCTTGCAGCAGG
CCATAGTGGACGACGACGCCAACAACGCCAAGGCCGTGGTGAAGACTTTCCACGAGACGC
TCAACTGCTGCGGCTCCAACACGCTGACCACGCTGACCACCTCTGTGCTCAAGAACAGCC
TGTGCCCCTCGGGTGGCAACATCATCAGCAACTTGATGAAGGAGGACTGCCACAGCAAGA
TTGACGAGCTCTTCTCGGGGAAGCTGTACCTCATTGGCATCGCAGCCATTGTGGTCGCTG
TGATCATGATCTTCGAGATGATCCTGAGCATGGTACTGTGCTGTGGCATCCGGAACAGCT
CGGTGTACTGAGGCCCCGGCCACCGAGGCCGCAGGGGGGCCGCCGCCCCCCGCGGTGCCC
CCAGAGTGACCGGATACTTCTGAGAAGGGCGGTCAGCACCTGTGTATATAACTTCCTGAT
ATCACCGCTACACTGATCAGCCTTTACTTTTGAGGTCTTGTTCCTGTCCTCAAGCTCCCT
GTTACTTTTGGGGCCGCCGTCACCCGTAGGTGGCATGTGAGTGGGCCGTGGGGACTCTAG
GGCAGGGGCCCCCTCTGCTTCCGGGGCTGCTTGGGGCCTCTGCCTGCTCAGCCAGGCCTC
TCCCGGGGGCCACGAGGGCCCTACGGCCCAGCTGCGTCCTCCCACCCAGCCGACCCCGTG
GGCTGCGCGCTCGCCCAGCCCTTTTTAATCCTTGTTTCTTTCCGGCCGCCTGTCCTGAGA
GCCGGGTCTCCGAGCAGCCTTACGCCTCTGATGCACCTCTCCTTTCTAACGCGTCACTTT
CGACTGTAATTACATCCTCAAAGTCATTCAATAAAGAAAGAAGAAACAGGCATGCTAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
86-202, gnl|bosTau2|chr29 (44665295-44665179) |
|
86-202, gnl|canFam2|chr18 (49491452-49491629) |
|
86-202, gnl|danRer3|chrUn (52525460-52525627) |
|
86-202, gnl|echTel1|scaffold_89896 (1582-1759) |
|
86-202, gnl|fr1|chrUn (193863444-193863299) |
|
86-202, gnl|galGal2|chr5 (11197751-11197564) |
|
86-202, gnl|hg17|chr11 (2368172-2368350) |
|
86-202, gnl|Hg17|chr11 (2368217-2368333) |
|
86-202, gnl|mm7|chr7 (139489698-139489915) |
|
86-202, gnl|Mm7|chr7 (139489772-139489888) |
|
86-202, gnl|monDom2|scaffold_489 (29729-29599) |
|
86-202, gnl|oryCun1|scaffold_124335 (3828-3996) |
|
86-202, gnl|panTro1|chr9 (2550569-2550747) |
|
86-202, gnl|rheMac2|chr14 (2398785-2398960) |
|
86-202, gnl|rn3|chr1 (203491026-203491217) |
|
86-202, gnl|tetNig1|chr13 (12354385-12354242) |
| |
|
371-479, gnl|bosTau2|chr29 (44660757-44660649) |
|
371-479, gnl|Hg17|chr11 (2373218-2373326) |
|
371-479, gnl|Mm7|chr7 (139493524-139493632) |
| |
|
668-1258, gnl|bosTau2|chr29 (44659596-44659001) |
|
668-1258, gnl|Hg17|chr11 (2374609-2375204) |
|
668-1258, gnl|Mm7|chr7 (139494591-139495210) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
86-202, gnl|bosTau2|chr29 (44665295-44665179) |
|
86-202, gnl|canFam2|chr18 (49491452-49491629) |
|
86-202, gnl|danRer3|chrUn (52525460-52525627) |
|
86-202, gnl|echTel1|scaffold_89896 (1582-1759) |
|
86-202, gnl|fr1|chrUn (193863444-193863299) |
|
86-202, gnl|galGal2|chr5 (11197751-11197564) |
|
86-202, gnl|hg17|chr11 (2368172-2368350) |
|
86-202, gnl|Hg17|chr11 (2368217-2368333) |
|
86-202, gnl|mm7|chr7 (139489698-139489915) |
|
86-202, gnl|Mm7|chr7 (139489772-139489888) |
|
86-202, gnl|monDom2|scaffold_489 (29729-29599) |
|
86-202, gnl|oryCun1|scaffold_124335 (3828-3996) |
|
86-202, gnl|panTro1|chr9 (2550569-2550747) |
|
86-202, gnl|rheMac2|chr14 (2398785-2398960) |
|
86-202, gnl|rn3|chr1 (203491026-203491217) |
|
86-202, gnl|tetNig1|chr13 (12354385-12354242) |
| |
|
371-479, gnl|bosTau2|chr29 (44660757-44660649) |
|
371-479, gnl|Hg17|chr11 (2373218-2373326) |
|
371-479, gnl|Mm7|chr7 (139493524-139493632) |
| |
|
668-1258, gnl|bosTau2|chr29 (44659596-44659001) |
|
668-1258, gnl|Hg17|chr11 (2374609-2375204) |
|
668-1258, gnl|Mm7|chr7 (139494591-139495210) |
|
cag (1.96553) |
|
hyp (1.71404) |
|
fce (1.35796) |
|
nlu (1.34177) |
|
jca (1.25356) |
|
nje (0.8296) |
|
lnt (0.711541) |
|
fbs (0.701385) |
|
eje (0.691836) |
|
cov (0.660764) |
|
ese (0.632511) |
|
cly (0.603209) |
|
ute (0.531138) |
|
eru (0.480192) |
|
ece (0.45861) |
|
cty (0.41632) |
|
fli (0.405762) |
|
col (0.390016) |
|
eep (0.367692) |
|
med (0.348756) |
|
mcp (0.341297) |
|
fhi (0.339155) |
|
cli (0.305623) |
|
nbm (0.297974) |
|
cga (0.279096) |
|
ebs (0.236602) |
|
ecc (0.23007) |
|
nms (0.213858) |
|
mas (0.210305) |
|
jej (0.197844) |
|
fcc (0.197785) |
|
nep (0.183925) |
|
fty (0.17584) |
|
ill (0.175593) |
|
eye (0.170503) |
|
nco (0.161734) |
|
csp (0.161186) |
|
hlv (0.139256) |
|
nca (0.136874) |
|
pla (0.133672) |
|
nmm (0.132802) |
|
cbr (0.127975) |
|
thg (0.126791) |
|
cag (1.96553) |
|
hyp (1.71404) |
|
fce (1.35796) |
|
nlu (1.34177) |
|
jca (1.25356) |
|
nje (0.8296) |
|
lnt (0.711541) |
|
fbs (0.701385) |
|
eje (0.691836) |
|
cov (0.660764) |
|
ese (0.632511) |
|
cly (0.603209) |
|
ute (0.531138) |
|
eru (0.480192) |
|
ece (0.45861) |
|
cty (0.41632) |
|
fli (0.405762) |
|
col (0.390016) |
|
eep (0.367692) |
|
med (0.348756) |
|
mcp (0.341297) |
|
fhi (0.339155) |
|
cli (0.305623) |
|
nbm (0.297974) |
|
cga (0.279096) |
|
ebs (0.236602) |
|
ecc (0.23007) |
|
nms (0.213858) |
|
mas (0.210305) |
|
jej (0.197844) |
|
fcc (0.197785) |
|
nep (0.183925) |
|
fty (0.17584) |
|
ill (0.175593) |
|
eye (0.170503) |
|
nco (0.161734) |
|
csp (0.161186) |
|
hlv (0.139256) |
|
nca (0.136874) |
|
pla (0.133672) |
|
nmm (0.132802) |
|
cbr (0.127975) |
|
thg (0.126791) |
