Non-Coding RNA Search

Ss1.1-Pig4-TMW8054G18.3

Sequence:


               
               CTCATCTGCCTCTTTGATTCCACCCAGCCTCTGCCCACCTCCAGTGTGCTAAGTCCCCAA
GAGACTGGCCTGAGCGTCTGGGACTGCTTTTCATTTGTGTCAAGTGCCTGTGGTCCCATG
CTCAGCTCTGCCCTGCATGAGATGGGATTCCCAACTTCTGACATCTCCATCAGCTCACCA
TGGCAGAATGAGCAGGTAGCCTTCCTCTTTGGACCACCCAGAGAGAACATTCCAACCAAT
ATTCTGTATTAACTGCCTTACGAAGTTGTTTTCTGGGACTAGTTTACAGTGACCACACAA
GAGCCTCCTGCCCCAAAGCCTGTGGACACACGGACACATACAAGCTCACACGCAGAGACG
CTTATACAGGTGCACACCCACCTTCATGCACACACATACAGGCATCTTCATGCACACATT
TCCCTGGGTTCAGCTTCTGGATACGGCTGGATGGGACAGTCCCACCAGAGAGGGGGCTTA
ACCCTGGACAAAGATGGGACACGCTTGTATTCTTTTTCTCTTTTTCCCTCTTCATCGTAA
CCAGACTCTGGAAATGCCAGCATTTACACGTTCAGTGGAGCAGAGAGTGAGGAAAGAGGT
GCTTGAATTCACATAGCCAGTTAGCGACAACAGCTATTTTCCCTCCCTGGGGGATTTGTA
TGTTTCCCTAGAACTCTCCTTCGAGAAGGAAATGTCATGGTCTTGGGTCTCTGTCCCAGG
ATAGAACTCAGGACCCTAAATCTACTAGGAAATGGCATTCTGTTCACCTCCAGCAAGGAG
TAGGGCAAAGCACCTTACCTCGAGGTCTCAGGAGGGACGGGAGGGCCCTCTCTGCCTGAT
CTTGATGAAGCACTTAGCTGCCAGGCACCTATCCCCACGTTGATATTGGAGAGTATTTTA
AAACAATTTGAAGAAAGTATTTTTCATACCTGGTTTGTATTCTTTGGGAGAATTTTAAAG
AGAGCTGAGAAATGCCTCTGTTGGTAACCTCCCCTTCTGTACCCTAGGTTTATAATAAAG
AGTTCTATACTTTGGAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCATCTGCCTCTTTGATTCCACCCAGCCTCTGCCCACCTCCAGTGTGCTAAGTCCCCAA
GAGACTGGCCTGAGCGTCTGGGACTGCTTTTCATTTGTGTCAAGTGCCTGTGGTCCCATG
CTCAGCTCTGCCCTGCATGAGATGGGATTCCCAACTTCTGACATCTCCATCAGCTCACCA
TGGCAGAATGAGCAGGTAGCCTTCCTCTTTGGACCACCCAGAGAGAACATTCCAACCAAT
ATTCTGTATTAACTGCCTTACGAAGTTGTTTTCTGGGACTAGTTTACAGTGACCACACAA
GAGCCTCCTGCCCCAAAGCCTGTGGACACACGGACACATACAAGCTCACACGCAGAGACG
CTTATACAGGTGCACACCCACCTTCATGCACACACATACAGGCATCTTCATGCACACATT
TCCCTGGGTTCAGCTTCTGGATACGGCTGGATGGGACAGTCCCACCAGAGAGGGGGCTTA
ACCCTGGACAAAGATGGGACACGCTTGTATTCTTTTTCTCTTTTTCCCTCTTCATCGTAA
CCAGACTCTGGAAATGCCAGCATTTACACGTTCAGTGGAGCAGAGAGTGAGGAAAGAGGT
GCTTGAATTCACATAGCCAGTTAGCGACAACAGCTATTTTCCCTCCCTGGGGGATTTGTA
TGTTTCCCTAGAACTCTCCTTCGAGAAGGAAATGTCATGGTCTTGGGTCTCTGTCCCAGG
ATAGAACTCAGGACCCTAAATCTACTAGGAAATGGCATTCTGTTCACCTCCAGCAAGGAG
TAGGGCAAAGCACCTTACCTCGAGGTCTCAGGAGGGACGGGAGGGCCCTCTCTGCCTGAT
CTTGATGAAGCACTTAGCTGCCAGGCACCTATCCCCACGTTGATATTGGAGAGTATTTTA
AAACAATTTGAAGAAAGTATTTTTCATACCTGGTTTGTATTCTTTGGGAGAATTTTAAAG
AGAGCTGAGAAATGCCTCTGTTGGTAACCTCCCCTTCTGTACCCTAGGTTTATAATAAAG
AGTTCTATACTTTGGAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               628-808, + strand, RNAz p=0.999997

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               628-808, + strand, RNAz p=0.999997

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               678-808, DB806098 full-length enriched swine cDNA library, adult alveolar 
(dbj|DB806098.1|), blast E-value=0, identity=96.18% 
               

               
               674-744, AM011240 KN-252-bone-marrow, Bos taurus Bos taurus cDNA clone 
(emb|AM011240.1|), blast E-value=0.00000000001, identity=88.73% 
               

               
               674-744, 1476967 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DT894347.1|), 
blast E-value=0.00000000001, identity=88.73% 
               

               
               674-744, 1480327 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DT901143.1|), 
blast E-value=0.00000000001, identity=88.73% 
               

               
               674-744, 001117BMUA007308HT BMUA Bos taurus cDNA, mRNA sequence 
(gb|DY074083.1|), blast E-value=0.00000000001, identity=88.73% 
               

               
               712-808, PADT0811005_I17F porcine adipose tissue cDNA library (PADT) Sus 
(gb|EB413394.1|), blast E-value=0, identity=100%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               678-808, DB806098 full-length enriched swine cDNA library, adult alveolar 
(dbj|DB806098.1|), blast E-value=0, identity=96.18% 
               

               
               674-744, AM011240 KN-252-bone-marrow, Bos taurus Bos taurus cDNA clone 
(emb|AM011240.1|), blast E-value=0.00000000001, identity=88.73% 
               

               
               674-744, 1476967 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DT894347.1|), 
blast E-value=0.00000000001, identity=88.73% 
               

               
               674-744, 1480327 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DT901143.1|), 
blast E-value=0.00000000001, identity=88.73% 
               

               
               674-744, 001117BMUA007308HT BMUA Bos taurus cDNA, mRNA sequence 
(gb|DY074083.1|), blast E-value=0.00000000001, identity=88.73% 
               

               
               712-808, PADT0811005_I17F porcine adipose tissue cDNA library (PADT) Sus 
(gb|EB413394.1|), blast E-value=0, identity=100%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK097983, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK097983, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-1035, gnl|bosTau2|chr22 (8723287-8722213)
               

               
               1-1035, gnl|Hg17|chr3 (38158419-38159514)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1035, gnl|bosTau2|chr22 (8723287-8722213)
               

               
               1-1035, gnl|Hg17|chr3 (38158419-38159514)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               duo (0.345602)
               

               
               spl (0.286369)
               

               
               che (0.272628)
               

               
               cly (0.241284)
               

               
               nlu (0.191681)
               

               
               cut (0.169924)
               

               
               eli (0.151814)
               

               
               clu (0.119646)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.345602)
               

               
               spl (0.286369)
               

               
               che (0.272628)
               

               
               cly (0.241284)
               

               
               nlu (0.191681)
               

               
               cut (0.169924)
               

               
               eli (0.151814)
               

               
               clu (0.119646)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	678-808, DB806098 full-length enriched swine cDNA library, adult alveolar (dbj\|DB806098.1\|), blast E-value=0, identity=96.18%
	674-744, AM011240 KN-252-bone-marrow, Bos taurus Bos taurus cDNA clone (emb\|AM011240.1\|), blast E-value=0.00000000001, identity=88.73%
	674-744, 1476967 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DT894347.1\|), blast E-value=0.00000000001, identity=88.73%
	674-744, 1480327 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DT901143.1\|), blast E-value=0.00000000001, identity=88.73%
	674-744, 001117BMUA007308HT BMUA Bos taurus cDNA, mRNA sequence (gb\|DY074083.1\|), blast E-value=0.00000000001, identity=88.73%
	712-808, PADT0811005_I17F porcine adipose tissue cDNA library (PADT) Sus (gb\|EB413394.1\|), blast E-value=0, identity=100%

	1-1035, gnl\|bosTau2\|chr22 (8723287-8722213)
	1-1035, gnl\|Hg17\|chr3 (38158419-38159514)

	duo (0.345602)
	spl (0.286369)
	che (0.272628)
	cly (0.241284)
	nlu (0.191681)
	cut (0.169924)
	eli (0.151814)
	clu (0.119646)
	jca (0.11396)
	nbm (0.0993246)
	jej (0.0989218)