Ss1.1-Pig4-TMW8054G24.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACCCCCGCCCCCACCTCCAGCCCCAGAACAGCAGACGGCACCTCCACCAGGGTCCCCTC CTGGTGGCGCAGGGAGTCCCGGTGGCCTGGGTCCGGAGAGCCTGCCGCTGGAGTTTTTTA CCTCGGTGGTGCAGGGTGTGCTCAGCTCCCTGCTGGGCTCCCTGGGGGCTCGGGCTGGCA GCAGTGAGAGTATCGCTGCTTTCATACAACGCCTTAGTGGATCCAGCAACATCTTCGAGC CTGGGGCTGATGGGGCCCTCGGATTCTTTGGGGCCCTGCTCTCTCTTCTGTGCCAGAACT TTTCCATGGTGGACGTGGTGATGCTTCTCCATGGGCATTTCCAGCCACTGCAGCGGCTCC AGCCCCAGCTGCGATCCTTCTTCCACCAGCACTACCTGGGCGGCCAGGAGCCCACACCTG GTAACATCCGGACGGCAACCCACACGTTGATCACAGGGCTGGAGGAATACGTGCGGGAGA GTTTTTCTTTGGTGCAAGTTCAGCCAGGTGTGGATATCATCCGAACAAACCTGGAATTTC TCCAAGAGCAATTTAATAGCATTGCTGCTCACGTGATGCACTGCACAGACAGTGGGTTTG GGGCCCGTTTGCTGGAGTTGTGTAACCAGGGCCTGTTTGAATGCCTGGCTCTGAACCTGC ACTGCTTGGGGGGACAGCAGATGGAGCTCGCTGCTGTTATCAATGGCCGAATTCGTCGCA TGTCTCGTGGAGTGAATCCGTCCTTGGTGAGCTGGCTGACCACTATGATGGGGCTGAGGC TTCAGGTGGTACTGGAGCACATGCCTGTAGGGCCCGATGCCATCCTCAGATACGTCCGCA GGGTTGGTGATCCCCCCCAGCCACTTCCTGAGGAGCCAATGGAAGTGCAGGGATCAGAGA GAACTTCCCCTGAGCCTCAGCGGGAGAACGCTTCCCCAGCCCCCGGAACAACAGCAGAAG AGGCCATGTCCCGAGGTCCACCTCCTGCTCCTGAGGGGGGCTCCCGAGACGAACAGGATG GAGCTGCAGCCGAGACAGAACCTTGGGCGGCTGCAGTCCCCCCAGAATGGGTCCCTATTA TCCAGCAGGACATTCAGAGCCAGCGGAAGGTGAAACCGCAGCCCCCCCTGAGCGATGCCT ACCTCAGTGGTATGCCTGCCAAGAGACGCAAGACGATGCAGGGTGAGGGCCCCCAGCTGC TTCTCTCAGAGGCCGTGAGCCGTGCAGCTAAGGCAGCCGGAGCTCGGCCCCTGACGAGCC CCGAGAGCCTGAGCCGGGACCTGGAGGCACCAGAGGTTCAGGAGAGCTACAGGCAGCAGC TCCGAGCTGATATACAAAAGCGACTGCAGGAAGACCCCAACTACAGTCCCCAGCGCTTCC CTAATGCCCACAGGGCCTTTGCTGAAGATCCCTAGTTGTTTGCTCCATGGCCCTCCATCA TCAGGGGACCATTTCCCCCTTCTTCCTTCACAGTATTTAAGAAATAAAAAGTCAGATTTT CCTGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACCCCCGCCCCCACCTCCAGCCCCAGAACAGCAGACGGCACCTCCACCAGGGTCCCCTC CTGGTGGCGCAGGGAGTCCCGGTGGCCTGGGTCCGGAGAGCCTGCCGCTGGAGTTTTTTA CCTCGGTGGTGCAGGGTGTGCTCAGCTCCCTGCTGGGCTCCCTGGGGGCTCGGGCTGGCA GCAGTGAGAGTATCGCTGCTTTCATACAACGCCTTAGTGGATCCAGCAACATCTTCGAGC CTGGGGCTGATGGGGCCCTCGGATTCTTTGGGGCCCTGCTCTCTCTTCTGTGCCAGAACT TTTCCATGGTGGACGTGGTGATGCTTCTCCATGGGCATTTCCAGCCACTGCAGCGGCTCC AGCCCCAGCTGCGATCCTTCTTCCACCAGCACTACCTGGGCGGCCAGGAGCCCACACCTG GTAACATCCGGACGGCAACCCACACGTTGATCACAGGGCTGGAGGAATACGTGCGGGAGA GTTTTTCTTTGGTGCAAGTTCAGCCAGGTGTGGATATCATCCGAACAAACCTGGAATTTC TCCAAGAGCAATTTAATAGCATTGCTGCTCACGTGATGCACTGCACAGACAGTGGGTTTG GGGCCCGTTTGCTGGAGTTGTGTAACCAGGGCCTGTTTGAATGCCTGGCTCTGAACCTGC ACTGCTTGGGGGGACAGCAGATGGAGCTCGCTGCTGTTATCAATGGCCGAATTCGTCGCA TGTCTCGTGGAGTGAATCCGTCCTTGGTGAGCTGGCTGACCACTATGATGGGGCTGAGGC TTCAGGTGGTACTGGAGCACATGCCTGTAGGGCCCGATGCCATCCTCAGATACGTCCGCA GGGTTGGTGATCCCCCCCAGCCACTTCCTGAGGAGCCAATGGAAGTGCAGGGATCAGAGA GAACTTCCCCTGAGCCTCAGCGGGAGAACGCTTCCCCAGCCCCCGGAACAACAGCAGAAG AGGCCATGTCCCGAGGTCCACCTCCTGCTCCTGAGGGGGGCTCCCGAGACGAACAGGATG GAGCTGCAGCCGAGACAGAACCTTGGGCGGCTGCAGTCCCCCCAGAATGGGTCCCTATTA TCCAGCAGGACATTCAGAGCCAGCGGAAGGTGAAACCGCAGCCCCCCCTGAGCGATGCCT ACCTCAGTGGTATGCCTGCCAAGAGACGCAAGACGATGCAGGGTGAGGGCCCCCAGCTGC TTCTCTCAGAGGCCGTGAGCCGTGCAGCTAAGGCAGCCGGAGCTCGGCCCCTGACGAGCC CCGAGAGCCTGAGCCGGGACCTGGAGGCACCAGAGGTTCAGGAGAGCTACAGGCAGCAGC TCCGAGCTGATATACAAAAGCGACTGCAGGAAGACCCCAACTACAGTCCCCAGCGCTTCC CTAATGCCCACAGGGCCTTTGCTGAAGATCCCTAGTTGTTTGCTCCATGGCCCTCCATCA TCAGGGGACCATTTCCCCCTTCTTCCTTCACAGTATTTAAGAAATAAAAAGTCAGATTTT CCTGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 41-240, + strand, RNAz p=0.996927 | |
| 486-1319, + strand, RNAz p=0.760887 | |
| 1196-1313, + strand, RNAz p=0.812328 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 41-240, + strand, RNAz p=0.996927 | |
| 486-1319, + strand, RNAz p=0.760887 | |
| 1196-1313, + strand, RNAz p=0.812328 |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 1-262, gnl|bosTau2|chr23 (23306802-23306541) | |
| 1-262, gnl|Hg17|chr6 (31718122-31717867) | |
| 1-262, gnl|Mm7|chr17 (33241337-33241592) | |
| 486-588, gnl|bosTau2|chr23 (23305854-23305752) | |
| 486-588, gnl|canFam2|chr12 (4132218-4132360) | |
| 486-588, gnl|danRer3|chr15 (38287185-38287320) | |
| 486-588, gnl|dasNov1|scaffold_15034 (1802-1941) | |
| 486-588, gnl|echTel1|scaffold_303864 (1932-2073) | |
| 486-588, gnl|fr1|chrUn (175757079-175756924) | |
| 486-588, gnl|hg17|chr6 (31717075-31717218) | |
| 486-588, gnl|Hg17|chr6 (31717178-31717076) | |
| 486-588, gnl|loxAfr1|scaffold_26979 (12765-12904) | |
| 486-588, gnl|mm7|chr17 (33242391-33242252) | |
| 486-588, gnl|Mm7|chr17 (33242286-33242388) | |
| 486-588, gnl|monDom2|scaffold_42 (17825012-17824783) | |
| 486-588, gnl|oryCun1|scaffold_198577 (10796-10933) | |
| 486-588, gnl|panTro1|chr5 (32116306-32116449) | |
| 486-588, gnl|rn3|chr20 (3741923-3742062) | |
| 486-588, gnl|tetNig1|chrUn_random (78647272-78647422) | |
| 486-588, gnl|xenTro1|scaffold_895 (123346-123204) | |
| 714-860, gnl|bosTau2|chr23 (23305380-23305234) | |
| 714-860, gnl|Hg17|chr6 (31716694-31716548) | |
| 714-860, gnl|Mm7|chr17 (33242755-33242901) | |
| 910-1065, gnl|bosTau2|chr23 (23304974-23304819) | |
| 910-1065, gnl|Hg17|chr6 (31716295-31716140) | |
| 910-1065, gnl|Mm7|chr17 (33243164-33243319) | |
| 1171-1319, gnl|bosTau2|chr23 (23304100-23303952) | |
| 1171-1319, gnl|canFam2|chr12 (4130421-4130605) | |
| 1171-1319, gnl|danRer3|chr15 (38279256-38279417) | |
| 1171-1319, gnl|echTel1|scaffold_303864 (112-297) | |
| 1171-1319, gnl|fr1|chrUn (175758861-175758663) | |
| 1171-1319, gnl|hg17|chr6 (31715243-31715424) | |
| 1171-1319, gnl|Hg17|chr6 (31715404-31715256) | |
| 1171-1319, gnl|loxAfr1|scaffold_24380 (24125-24308) | |
| 1171-1319, gnl|mm7|chr17 (33244070-33243889) | |
| 1171-1319, gnl|Mm7|chr17 (33243904-33244052) | |
| 1171-1319, gnl|monDom2|scaffold_42 (17826737-17826564) | |
| 1171-1319, gnl|oryCun1|scaffold_198577 (9016-9200) | |
| 1171-1319, gnl|panTro1|chr5 (32114482-32114663) | |
| 1171-1319, gnl|rheMac2|chr4 (31281063-31281245) | |
| 1171-1319, gnl|rn3|chr20 (3740248-3740429) | |
| 1171-1319, gnl|tetNig1|chrUn_random (78644669-78644826) | |
| 1171-1319, gnl|xenTro1|scaffold_895 (127780-127609) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-262, gnl|bosTau2|chr23 (23306802-23306541) | |
| 1-262, gnl|Hg17|chr6 (31718122-31717867) | |
| 1-262, gnl|Mm7|chr17 (33241337-33241592) | |
| 486-588, gnl|bosTau2|chr23 (23305854-23305752) | |
| 486-588, gnl|canFam2|chr12 (4132218-4132360) | |
| 486-588, gnl|danRer3|chr15 (38287185-38287320) | |
| 486-588, gnl|dasNov1|scaffold_15034 (1802-1941) | |
| 486-588, gnl|echTel1|scaffold_303864 (1932-2073) | |
| 486-588, gnl|fr1|chrUn (175757079-175756924) | |
| 486-588, gnl|hg17|chr6 (31717075-31717218) | |
| 486-588, gnl|Hg17|chr6 (31717178-31717076) | |
| 486-588, gnl|loxAfr1|scaffold_26979 (12765-12904) | |
| 486-588, gnl|mm7|chr17 (33242391-33242252) | |
| 486-588, gnl|Mm7|chr17 (33242286-33242388) | |
| 486-588, gnl|monDom2|scaffold_42 (17825012-17824783) | |
| 486-588, gnl|oryCun1|scaffold_198577 (10796-10933) | |
| 486-588, gnl|panTro1|chr5 (32116306-32116449) | |
| 486-588, gnl|rn3|chr20 (3741923-3742062) | |
| 486-588, gnl|tetNig1|chrUn_random (78647272-78647422) | |
| 486-588, gnl|xenTro1|scaffold_895 (123346-123204) | |
| 714-860, gnl|bosTau2|chr23 (23305380-23305234) | |
| 714-860, gnl|Hg17|chr6 (31716694-31716548) | |
| 714-860, gnl|Mm7|chr17 (33242755-33242901) | |
| 910-1065, gnl|bosTau2|chr23 (23304974-23304819) | |
| 910-1065, gnl|Hg17|chr6 (31716295-31716140) | |
| 910-1065, gnl|Mm7|chr17 (33243164-33243319) | |
| 1171-1319, gnl|bosTau2|chr23 (23304100-23303952) | |
| 1171-1319, gnl|canFam2|chr12 (4130421-4130605) | |
| 1171-1319, gnl|danRer3|chr15 (38279256-38279417) | |
| 1171-1319, gnl|echTel1|scaffold_303864 (112-297) | |
| 1171-1319, gnl|fr1|chrUn (175758861-175758663) | |
| 1171-1319, gnl|hg17|chr6 (31715243-31715424) | |
| 1171-1319, gnl|Hg17|chr6 (31715404-31715256) | |
| 1171-1319, gnl|loxAfr1|scaffold_24380 (24125-24308) | |
| 1171-1319, gnl|mm7|chr17 (33244070-33243889) | |
| 1171-1319, gnl|Mm7|chr17 (33243904-33244052) | |
| 1171-1319, gnl|monDom2|scaffold_42 (17826737-17826564) | |
| 1171-1319, gnl|oryCun1|scaffold_198577 (9016-9200) | |
| 1171-1319, gnl|panTro1|chr5 (32114482-32114663) | |
| 1171-1319, gnl|rheMac2|chr4 (31281063-31281245) | |
| 1171-1319, gnl|rn3|chr20 (3740248-3740429) | |
| 1171-1319, gnl|tetNig1|chrUn_random (78644669-78644826) | |
| 1171-1319, gnl|xenTro1|scaffold_895 (127780-127609) |
| Expressed library(ies): 24 entry(ies) | More info |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
| pla (0.534688) | |
| ton (0.526501) | |
| csp (0.322373) | |
| cga (0.279096) | |
| col (0.195008) | |
| fty (0.17584) | |
| ill (0.175593) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cli (0.152812) | |
| eli (0.151814) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| cov (0.132153) | |
| ese (0.126502) | |
| eep (0.122564) | |
| eru (0.120048) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.534688) | |
| ton (0.526501) | |
| csp (0.322373) | |
| cga (0.279096) | |
| col (0.195008) | |
| fty (0.17584) | |
| ill (0.175593) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cli (0.152812) | |
| eli (0.151814) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| cov (0.132153) | |
| ese (0.126502) | |
| eep (0.122564) | |
| eru (0.120048) | |
| med (0.116252) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| eje (0.0988338) | |
| ldo (0.0970026) |