Non-Coding RNA Search

Ss1.1-Pig4-TMW8054H05.5

Sequence:


               
               GCACCTCCCAGTACTTTCTTTGGTACCTCTGCCTATTGCCCCTTGTGATGCCACTAGTGA
GGATGTCTTGGAGAAGAGCTGTGGTCCTTCTAATGTTATGGTTCATAGGGCAGGCCTTAT
GGCTGGCTCCTGCTTATGTTCTAGAGTTTCAAGGAAAGAACACCTTTGTTTTCATCTGGT
TAGCTGGTTTGTTCTTCCTCCTTATCAACTGTTATATTCTAATTCAAATTATTTCCCATT
ACCAGAAGAAACCCTGGACAGACACAACCAAATATGACTGATAGAGATGCTCCAGTTCTT
CTGCGACTTGGATCTATTATATTCTGATTGTTCTGAATGGACCAGAGAGAGCTTTTGAGA
AAGAAAAAAACAAAAACAAAAACAAAAAAAACCACAGAAAACATTTGAGCATTCTAAGCT
CTCTAGTGAAAGTTCAGTGTGGAGTATAAAATACTATTCCAACAAATTTAAATGAATGCT
TGCCTTAGCTATAAAAGGGACTCAATTGAGGTCCACCTTTTAGGAAATCTCAGGGCTCAT
TTATCTGGAACATGATGGGAAGGAAAAGCTAGTAGTTTGGAAATGGAAAGGCTGATGAAA
TTATCAGATGGTCAAGGGTTTTTTGTAGAAAAATAGAGGAATATACTCAAATCTAAGCCA
GTATTTGTTTCATTATACTCTGGTGCTATCTGAAGCTGTCTTGTCTTTTAACCCCCACTT
TTTCTTTCTAAAGCTTTCCTGATGACTTATAAAATGTTCCTAAAGTACAGCTTTTAGCTA
TAAAGTGTTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACCTCCCAGTACTTTCTTTGGTACCTCTGCCTATTGCCCCTTGTGATGCCACTAGTGA
GGATGTCTTGGAGAAGAGCTGTGGTCCTTCTAATGTTATGGTTCATAGGGCAGGCCTTAT
GGCTGGCTCCTGCTTATGTTCTAGAGTTTCAAGGAAAGAACACCTTTGTTTTCATCTGGT
TAGCTGGTTTGTTCTTCCTCCTTATCAACTGTTATATTCTAATTCAAATTATTTCCCATT
ACCAGAAGAAACCCTGGACAGACACAACCAAATATGACTGATAGAGATGCTCCAGTTCTT
CTGCGACTTGGATCTATTATATTCTGATTGTTCTGAATGGACCAGAGAGAGCTTTTGAGA
AAGAAAAAAACAAAAACAAAAACAAAAAAAACCACAGAAAACATTTGAGCATTCTAAGCT
CTCTAGTGAAAGTTCAGTGTGGAGTATAAAATACTATTCCAACAAATTTAAATGAATGCT
TGCCTTAGCTATAAAAGGGACTCAATTGAGGTCCACCTTTTAGGAAATCTCAGGGCTCAT
TTATCTGGAACATGATGGGAAGGAAAAGCTAGTAGTTTGGAAATGGAAAGGCTGATGAAA
TTATCAGATGGTCAAGGGTTTTTTGTAGAAAAATAGAGGAATATACTCAAATCTAAGCCA
GTATTTGTTTCATTATACTCTGGTGCTATCTGAAGCTGTCTTGTCTTTTAACCCCCACTT
TTTCTTTCTAAAGCTTTCCTGATGACTTATAAAATGTTCCTAAAGTACAGCTTTTAGCTA
TAAAGTGTTAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26335593|dbj|BAC31497.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26335593|dbj|BAC31497.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               404-566, + strand, RNAz p=0.70709

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               404-566, + strand, RNAz p=0.70709

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-362, gnl|bosTau2|chr3 (5009012-5009360)
               

               
               1-362, gnl|Hg17|chr1 (156813611-156813257)
               

               
               1-362, gnl|Mm7|chr1 (172347863-172348201)
               


               
               404-566, gnl|bosTau2|chr3 (5009368-5009531)
               

               
               404-566, gnl|canFam2|chr38 (25160902-25160784)
               

               
               404-566, gnl|dasNov1|scaffold_6544 (58772-58677)
               

               
               404-566, gnl|echTel1|scaffold_312455 (119834-119717)
               

               
               404-566, gnl|hg17|chr1 (156813101-156813220)
               

               
               404-566, gnl|Hg17|chr1 (156813251-156813101)
               

               
               404-566, gnl|loxAfr1|scaffold_1253 (81999-82119)
               

               
               404-566, gnl|mm7|chr1 (172348365-172348247)
               

               
               404-566, gnl|Mm7|chr1 (172348209-172348363)
               

               
               404-566, gnl|oryCun1|scaffold_186384 (16263-16146)
               

               
               404-566, gnl|panTro1|chr1 (138897756-138897875)
               

               
               404-566, gnl|rheMac2|chr1 (138652579-138652687)
               

               
               404-566, gnl|rn3|chr13 (88567668-88567557)
               


               
               575-791, gnl|bosTau2|chr3 (5009871-5010098)
               

               
               575-791, gnl|Hg17|chr1 (156813092-156812884)
               

               
               575-791, gnl|Mm7|chr1 (172348373-172348582)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-362, gnl|bosTau2|chr3 (5009012-5009360)
               

               
               1-362, gnl|Hg17|chr1 (156813611-156813257)
               

               
               1-362, gnl|Mm7|chr1 (172347863-172348201)
               


               
               404-566, gnl|bosTau2|chr3 (5009368-5009531)
               

               
               404-566, gnl|canFam2|chr38 (25160902-25160784)
               

               
               404-566, gnl|dasNov1|scaffold_6544 (58772-58677)
               

               
               404-566, gnl|echTel1|scaffold_312455 (119834-119717)
               

               
               404-566, gnl|hg17|chr1 (156813101-156813220)
               

               
               404-566, gnl|Hg17|chr1 (156813251-156813101)
               

               
               404-566, gnl|loxAfr1|scaffold_1253 (81999-82119)
               

               
               404-566, gnl|mm7|chr1 (172348365-172348247)
               

               
               404-566, gnl|Mm7|chr1 (172348209-172348363)
               

               
               404-566, gnl|oryCun1|scaffold_186384 (16263-16146)
               

               
               404-566, gnl|panTro1|chr1 (138897756-138897875)
               

               
               404-566, gnl|rheMac2|chr1 (138652579-138652687)
               

               
               404-566, gnl|rn3|chr13 (88567668-88567557)
               


               
               575-791, gnl|bosTau2|chr3 (5009871-5010098)
               

               
               575-791, gnl|Hg17|chr1 (156813092-156812884)
               

               
               575-791, gnl|Mm7|chr1 (172348373-172348582)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cte (0.29274)
               

               
               fce (0.271592)
               

               
               ebs (0.118301)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               fce (0.271592)
               

               
               ebs (0.118301)

	1-362, gnl\|bosTau2\|chr3 (5009012-5009360)
	1-362, gnl\|Hg17\|chr1 (156813611-156813257)
	1-362, gnl\|Mm7\|chr1 (172347863-172348201)

	404-566, gnl\|bosTau2\|chr3 (5009368-5009531)
	404-566, gnl\|canFam2\|chr38 (25160902-25160784)
	404-566, gnl\|dasNov1\|scaffold_6544 (58772-58677)
	404-566, gnl\|echTel1\|scaffold_312455 (119834-119717)
	404-566, gnl\|hg17\|chr1 (156813101-156813220)
	404-566, gnl\|Hg17\|chr1 (156813251-156813101)
	404-566, gnl\|loxAfr1\|scaffold_1253 (81999-82119)
	404-566, gnl\|mm7\|chr1 (172348365-172348247)
	404-566, gnl\|Mm7\|chr1 (172348209-172348363)
	404-566, gnl\|oryCun1\|scaffold_186384 (16263-16146)
	404-566, gnl\|panTro1\|chr1 (138897756-138897875)
	404-566, gnl\|rheMac2\|chr1 (138652579-138652687)
	404-566, gnl\|rn3\|chr13 (88567668-88567557)

	575-791, gnl\|bosTau2\|chr3 (5009871-5010098)
	575-791, gnl\|Hg17\|chr1 (156813092-156812884)
	575-791, gnl\|Mm7\|chr1 (172348373-172348582)