Non-Coding RNA Search

Ss1.1-Pig4-TMW8054H06.5

Sequence:


               
               GAAGAGCTCAAGAGGGATCTGAAAATTAAGAAGGAGAAAGAGCTGGTGCAGGCCACCGCA
GTAGCTGCCACCTCCCCTGCAGCACCGCCTGCCCCTCCCGCCCCCCCACCTTCGCCTCCA
CCTCCGCCTCCCCCCCAGCACTCGGGCCCCCTGGCCACAGCCACGGCCACAGCCACGCTG
CCTGTGGCTTCCCAGAAAAGGAAGCGAGAAGAGGAAAGAGACTCGAGCTCCAGATCCAAG
AAAAAGAAAATGATCTCTACTACCTCAAAGGAAACGAAGAAGGACACAAAGCTTTACTGT
ATCTGTAAAACGCCTTACGATGAATCTAAGTTCTATATTGGCTGTGATCTTTGTACTAAC
TGGTATCATGGAGAATGTGTTGGCATCACAGAAAAGGAGGCTAAGAAAATGGATGTGTAC
ATCTGTAATGATTGTAAACGGGCACAAGAGGGCAGCAGTGAGGAATTGTACTGTATCTGC
AGAACACCTTATGATGAGTCACAATTTTATATTGGCTGCGATCGGTGTCAGAATTGGTAC
CATGGGCGCTGCGTTGGCATCTTGCAAAGTGAGGCAGAGCTCATTGACGAGTATGTCTGT
CCACAGTGCCAGTCAACAGAGGATGCCATGACAGTGCTCACGCCGCTGACGGAGAAAGAT
TATGAGGGTTTGAAAAGGGTGCTGCGTTCTTTACAGGCCCATAAGATGGCATGGCCTTTC
CTGGAACCGGTGGATCCTAATGATGCACCAGATTACTATGGTGTTATCAAGGAACCGATG
GACCTTGCCACTATGGAAGAAAGAGTACAAAGAAGATATTATGAAAAGCTGACGGAATTT
GTAGCAGATATGACCAAAATTTTTGATAATTGTCGTTACTACAATCCCAGTGACTCCCCT
TTTTACCAATGTGCAGAAGTTCTTGAATCATTCTTTGTACAGAAATTGAAAGGATTCAAG
GCTAGCAGGTCTCATAACAACAAACTGCAATCTACAGCTTCTTAAAGTTCAGCGTGTAAC
CTAACATAAAACACAGCAAGAATCTGGTTGTCTGAACTATTTTAAATTAAGGAGCCAGAT
GTTTTTAGTCAGGTTATCCTGACAAGACTTGACCTAAACTTCGTTTTTATTGGTCATAAC
AGTCCAATTATATTCTTGGCCAATTTTGTCCAACGGACAAGGGAAAAGCAAAGTCAACGA
CACCATTATCTTGTCAAGATCAAATGGTTTTACTATTGTGGCAGAAGCGGGAAAACTTTG
TTTATTGGAAAAAAAAAAAAAAAAAAGAAAGCAAGCAAGAATAAAAGATAATATGGGGTC
AAGTGTAACTCCATGGAAATGCCACGTCTGCTCTTCAGTGAAGAAGCTGGTTTAGAGTCT
CACAGAAAACTTTCAACTGTATTTATTTATTGTTGCAAAAAAGACGCTTTTTTATTGCTG
CCCTCATTTGTCAGCTAATTATTTTTTCTTATAAAATCCAGCCCCGGTTACATGTAATCC
ATTCTGTATCTTATCATGATTCCTGTAGGTAAAAGTACAAGACGACCTCTAGATGTCTTT
TCTTTCTATGAAAGGAGCTGCTATGTACACATGTGCACACACACACACAACTGGGAATCA
ACAATGAGTTTATTGTTCATGGTAGATAAAAATTAAGCTTGCATAAAGGTTGGGCTAAGT
GGTCCTGGACTACAGACTCTGTTGCCTTGAATATAACAATACAATTTGTCATTTACTCTG
CACCAGGCTAAAATGAGTAAAATCTATTTGAAGGTATCTTGTTTGTAAACATTTGTCAGA
TTCTAATTTTTTTTTCTTTTTGTATTAAAATTCAACTATGGATGTATATGAAACAAAATA
AATGGAGATAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGAGCTCAAGAGGGATCTGAAAATTAAGAAGGAGAAAGAGCTGGTGCAGGCCACCGCA
GTAGCTGCCACCTCCCCTGCAGCACCGCCTGCCCCTCCCGCCCCCCCACCTTCGCCTCCA
CCTCCGCCTCCCCCCCAGCACTCGGGCCCCCTGGCCACAGCCACGGCCACAGCCACGCTG
CCTGTGGCTTCCCAGAAAAGGAAGCGAGAAGAGGAAAGAGACTCGAGCTCCAGATCCAAG
AAAAAGAAAATGATCTCTACTACCTCAAAGGAAACGAAGAAGGACACAAAGCTTTACTGT
ATCTGTAAAACGCCTTACGATGAATCTAAGTTCTATATTGGCTGTGATCTTTGTACTAAC
TGGTATCATGGAGAATGTGTTGGCATCACAGAAAAGGAGGCTAAGAAAATGGATGTGTAC
ATCTGTAATGATTGTAAACGGGCACAAGAGGGCAGCAGTGAGGAATTGTACTGTATCTGC
AGAACACCTTATGATGAGTCACAATTTTATATTGGCTGCGATCGGTGTCAGAATTGGTAC
CATGGGCGCTGCGTTGGCATCTTGCAAAGTGAGGCAGAGCTCATTGACGAGTATGTCTGT
CCACAGTGCCAGTCAACAGAGGATGCCATGACAGTGCTCACGCCGCTGACGGAGAAAGAT
TATGAGGGTTTGAAAAGGGTGCTGCGTTCTTTACAGGCCCATAAGATGGCATGGCCTTTC
CTGGAACCGGTGGATCCTAATGATGCACCAGATTACTATGGTGTTATCAAGGAACCGATG
GACCTTGCCACTATGGAAGAAAGAGTACAAAGAAGATATTATGAAAAGCTGACGGAATTT
GTAGCAGATATGACCAAAATTTTTGATAATTGTCGTTACTACAATCCCAGTGACTCCCCT
TTTTACCAATGTGCAGAAGTTCTTGAATCATTCTTTGTACAGAAATTGAAAGGATTCAAG
GCTAGCAGGTCTCATAACAACAAACTGCAATCTACAGCTTCTTAAAGTTCAGCGTGTAAC
CTAACATAAAACACAGCAAGAATCTGGTTGTCTGAACTATTTTAAATTAAGGAGCCAGAT
GTTTTTAGTCAGGTTATCCTGACAAGACTTGACCTAAACTTCGTTTTTATTGGTCATAAC
AGTCCAATTATATTCTTGGCCAATTTTGTCCAACGGACAAGGGAAAAGCAAAGTCAACGA
CACCATTATCTTGTCAAGATCAAATGGTTTTACTATTGTGGCAGAAGCGGGAAAACTTTG
TTTATTGGAAAAAAAAAAAAAAAAAAGAAAGCAAGCAAGAATAAAAGATAATATGGGGTC
AAGTGTAACTCCATGGAAATGCCACGTCTGCTCTTCAGTGAAGAAGCTGGTTTAGAGTCT
CACAGAAAACTTTCAACTGTATTTATTTATTGTTGCAAAAAAGACGCTTTTTTATTGCTG
CCCTCATTTGTCAGCTAATTATTTTTTCTTATAAAATCCAGCCCCGGTTACATGTAATCC
ATTCTGTATCTTATCATGATTCCTGTAGGTAAAAGTACAAGACGACCTCTAGATGTCTTT
TCTTTCTATGAAAGGAGCTGCTATGTACACATGTGCACACACACACACAACTGGGAATCA
ACAATGAGTTTATTGTTCATGGTAGATAAAAATTAAGCTTGCATAAAGGTTGGGCTAAGT
GGTCCTGGACTACAGACTCTGTTGCCTTGAATATAACAATACAATTTGTCATTTACTCTG
CACCAGGCTAAAATGAGTAAAATCTATTTGAAGGTATCTTGTTTGTAAACATTTGTCAGA
TTCTAATTTTTTTTTCTTTTTGTATTAAAATTCAACTATGGATGTATATGAAACAAAATA
AATGGAGATAAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q86TN2_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q86TN2_HUMAN

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               176-295, - strand, RNAz p=0.938804
               

               
               543-662, + strand, RNAz p=0.991702
               

               
               1006-1396, - strand, RNAz p=0.985515
               

               
               1554-1655, + strand, RNAz p=0.507844

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               176-295, - strand, RNAz p=0.938804
               

               
               543-662, + strand, RNAz p=0.991702
               

               
               1006-1396, - strand, RNAz p=0.985515
               

               
               1554-1655, + strand, RNAz p=0.507844

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AB032251, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AB032251, +

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-331, gnl|bosTau2|chr19 (42963594-42963270)
               

               
               1-331, gnl|Hg17|chr17 (63386119-63386455)
               

               
               1-331, gnl|Mm7|chr11 (107156384-107156039)
               


               
               504-697, gnl|bosTau2|chr19 (42959496-42959303)
               

               
               504-697, gnl|Hg17|chr17 (63390790-63390983)
               

               
               504-697, gnl|Mm7|chr11 (107152866-107152673)
               


               
               967-1872, gnl|bosTau2|chr19 (42949945-42949031)
               

               
               967-1872, gnl|Hg17|chr17 (63408828-63409719)
               

               
               967-1872, gnl|Mm7|chr11 (107144882-107143990)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-331, gnl|bosTau2|chr19 (42963594-42963270)
               

               
               1-331, gnl|Hg17|chr17 (63386119-63386455)
               

               
               1-331, gnl|Mm7|chr11 (107156384-107156039)
               


               
               504-697, gnl|bosTau2|chr19 (42959496-42959303)
               

               
               504-697, gnl|Hg17|chr17 (63390790-63390983)
               

               
               504-697, gnl|Mm7|chr11 (107152866-107152673)
               


               
               967-1872, gnl|bosTau2|chr19 (42949945-42949031)
               

               
               967-1872, gnl|Hg17|chr17 (63408828-63409719)
               

               
               967-1872, gnl|Mm7|chr11 (107144882-107143990)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               rec (0.519211)
               

               
               thg (0.507164)
               

               
               spl (0.286369)
               

               
               ova (0.258264)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)

Expressed library(ies): 14 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.519211)
               

               
               thg (0.507164)
               

               
               spl (0.286369)
               

               
               ova (0.258264)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)

	176-295, - strand, RNAz p=0.938804
	543-662, + strand, RNAz p=0.991702
	1006-1396, - strand, RNAz p=0.985515
	1554-1655, + strand, RNAz p=0.507844

	1-331, gnl\|bosTau2\|chr19 (42963594-42963270)
	1-331, gnl\|Hg17\|chr17 (63386119-63386455)
	1-331, gnl\|Mm7\|chr11 (107156384-107156039)

	504-697, gnl\|bosTau2\|chr19 (42959496-42959303)
	504-697, gnl\|Hg17\|chr17 (63390790-63390983)
	504-697, gnl\|Mm7\|chr11 (107152866-107152673)

	967-1872, gnl\|bosTau2\|chr19 (42949945-42949031)
	967-1872, gnl\|Hg17\|chr17 (63408828-63409719)
	967-1872, gnl\|Mm7\|chr11 (107144882-107143990)

	rec (0.519211)
	thg (0.507164)
	spl (0.286369)
	ova (0.258264)
	tes (0.207814)
	aor (0.195274)
	eye (0.170503)
	nje (0.16592)
	isp (0.150376)
	fat (0.147427)
	lyg (0.133103)
	sug (0.127291)
	bla (0.124347)
	pgl (0.118483)