Non-Coding RNA Search

Ss1.1-Pig4-TMW8054H08.3

Sequence:


               
               TGTTTCTGTACGTAGTATTTAATCTTCCAAGCACATCTAGTGTCTGTCAGTTTCTAATTG
GCATGTGTAGGCTGCTCTGTGACTGAAGAATTTTTCAAACCAGCTTTACACCCTTCAGGA
AAAATCGTTTGTGATTGGATATTTAGTGTCTGCCGGGAAATTGGTATCCAAGATACTGAA
GCTGCAGTTATTTTATGATAGCACACTTCCCTTGATCTGCTTGTTTTTATTCCATCGCTG
TTCACCCTTAATTTTTAAAAATTTTATAGCCATACTCTCGATGCTCTTGATTTGTTGATT
CCACAAATCAATTTCATTAAGATCCAAAGATAGCAAGTCTTGAGGTATATTTTGTACCAA
ATTAAATTAGAAGACAAAAAATTTGTGCTTTCATAGTTGCTACAAAGATAAATAATGGAG
AGATTTGGTGCAAAACAACAAAATACAAAAAAATGTATTTATTAGCTATATATATATGTA
TATACATATATATATATATAGCTAATAAAATTACCTGAGGAGTGTAATGCTTGTTTATTT
TTTTGTGTATATCTTTGCAATCTATTTTATATATATGGACAGAAGAGACTGTGAAATATT
TAGCCATGCAGAACATGTGACCAGACCAGAGCATGTGTAGGAAGACATTTTGGTAATCAT
TAACTCTGCCCTGAAATGATGGACAAGTTATGATGTGTGTTGTCTACACTTCAATCAGTA
ATATTAGCAGATCTCCAAATGTTAGCCACATTGGTTTGTTTCCCTTGTACATTCTTTATT
CATGATATTTCAATGCTGTAACGTAACTGGGTGGTCCTTTTTAAACAAAACATTATTTGC
GAAACAGAAGGTATTATTTGTTTTTAAAGCTTTTGTAAATAAAGGCTTCAGAAATGTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTTCTGTACGTAGTATTTAATCTTCCAAGCACATCTAGTGTCTGTCAGTTTCTAATTG
GCATGTGTAGGCTGCTCTGTGACTGAAGAATTTTTCAAACCAGCTTTACACCCTTCAGGA
AAAATCGTTTGTGATTGGATATTTAGTGTCTGCCGGGAAATTGGTATCCAAGATACTGAA
GCTGCAGTTATTTTATGATAGCACACTTCCCTTGATCTGCTTGTTTTTATTCCATCGCTG
TTCACCCTTAATTTTTAAAAATTTTATAGCCATACTCTCGATGCTCTTGATTTGTTGATT
CCACAAATCAATTTCATTAAGATCCAAAGATAGCAAGTCTTGAGGTATATTTTGTACCAA
ATTAAATTAGAAGACAAAAAATTTGTGCTTTCATAGTTGCTACAAAGATAAATAATGGAG
AGATTTGGTGCAAAACAACAAAATACAAAAAAATGTATTTATTAGCTATATATATATGTA
TATACATATATATATATATAGCTAATAAAATTACCTGAGGAGTGTAATGCTTGTTTATTT
TTTTGTGTATATCTTTGCAATCTATTTTATATATATGGACAGAAGAGACTGTGAAATATT
TAGCCATGCAGAACATGTGACCAGACCAGAGCATGTGTAGGAAGACATTTTGGTAATCAT
TAACTCTGCCCTGAAATGATGGACAAGTTATGATGTGTGTTGTCTACACTTCAATCAGTA
ATATTAGCAGATCTCCAAATGTTAGCCACATTGGTTTGTTTCCCTTGTACATTCTTTATT
CATGATATTTCAATGCTGTAACGTAACTGGGTGGTCCTTTTTAAACAAAACATTATTTGC
GAAACAGAAGGTATTATTTGTTTTTAAAGCTTTTGTAAATAAAGGCTTCAGAAATGTTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               335-442, + strand, RNAz p=0.626344

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               335-442, + strand, RNAz p=0.626344

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               98-900, gnl|bosTau2|chr17 (729664-728894)
               

               
               98-900, gnl|Hg17|chrX (68939259-68938351)
               

               
               98-900, gnl|Mm7|chr8 (39283830-39283075)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               98-900, gnl|bosTau2|chr17 (729664-728894)
               

               
               98-900, gnl|Hg17|chrX (68939259-68938351)
               

               
               98-900, gnl|Mm7|chr8 (39283830-39283075)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               vin (0.332557)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               ret (0.128733)
               

               
               jca (0.11396)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               ret (0.128733)
               

               
               jca (0.11396)

	98-900, gnl\|bosTau2\|chr17 (729664-728894)
	98-900, gnl\|Hg17\|chrX (68939259-68938351)
	98-900, gnl\|Mm7\|chr8 (39283830-39283075)

	vin (0.332557)
	mcp (0.170648)
	fhi (0.169578)
	tbr (0.154178)
	bfe (0.149858)
	liv (0.146284)
	pty (0.142714)
	ret (0.128733)
	jca (0.11396)