Non-Coding RNA Search

Ss1.1-Pig4-TMW8054H12.3

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTGTTGAACATTTATTTATTT
ATTCCATGAAACACTCAAAGTTTAGGTCAGTGGGAAATAATTTTAATCAAAGAATTGTAC
ATTTTCTTCCCACATATCTTGCTTTGTATTAGGAAATGACACTGTGATCCATTTCACTAC
AATATTACAAAATATTTACAAGAAAATATTAAAAATAACTCAACATGAAAGGCAAGATGG
AATAAAATAAACTGGTTTTCCATAAATCTCTACTCCAGTGCCCACAGCACACAAGAAGAG
AATCAAAACAAATAAGTAACAAAGATCCCCTTGATCACAAGTTTTCAAAGAAGTGGAGAA
CGGGAAGAAACGGGATGAAAATGATGGTATGAAAAGGGGATGGATGTTAGCAGCACTGCT
TCAATAACCAATCTATTTTAAATGAAATACCCTCTTTTATATGCAATAAATTCTGAACAA
GGCTAAACTTTAGGATATTCCTTGAACTGAAATTAAAAATACCCGACAGTGAAAGCAGCT
CTTTCACCTAAGTTTAATAAGAGCCTCTTTCTCCATGAACCACGATGAGAAGAGAAGCCT
GTTCTGGCATCAAAAACTGTCACAGTAGCCCTTCCATCTCTTTCATGAAAGCTTCATAAA
CATCATCCTTAGTTTGTACTGAGACAGGAACAGCTGGACCAGATTTGGGGGCCGCTTTGG
CAAGAGGCACAGCAGAATCATCCTCTGACTTTCTCTGGGGAGTAGCAGTAGCCCCTTTAT
TCTCCCGACGAACCCTCAGTGCAGTGGGCACGAATCGAGTAATCTCTGCCTTGGGATTAG
TGATCTGTGGCTTGGCACTGATGGTTGCTGTGGCTTTCTTCTCAATGGTGGCTGCACTTG
TATCATCCGCCTTGGGTCGCTGAATCAAGTTGGGTGGAGCACTTAAAACCCCCGGGTTCG
GCAAGGGAGCTGGTGGGAAAAGCCCAGGTGGGGCAGGTCCAAGTGGAGGCACCAAAGGTG
GGCGCATCATGCCAGGACGAGGTGGAGGGATACCTGGAGGTGCAGGGGGAGGTAGCCTTG
GTGGGGGTCCCCGAGGAGGAGGGCCAGGAGGCAGACCTGGAGGTGGACCTGGGGGAGGGC
CAGGGGGTCGGCCTGGTGGTGGCCCTGGAGGTAAAAGTCGGGGTAAAGGCCCTCGGAGTC
CTGGCATTCCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTGTTGAACATTTATTTATTT
ATTCCATGAAACACTCAAAGTTTAGGTCAGTGGGAAATAATTTTAATCAAAGAATTGTAC
ATTTTCTTCCCACATATCTTGCTTTGTATTAGGAAATGACACTGTGATCCATTTCACTAC
AATATTACAAAATATTTACAAGAAAATATTAAAAATAACTCAACATGAAAGGCAAGATGG
AATAAAATAAACTGGTTTTCCATAAATCTCTACTCCAGTGCCCACAGCACACAAGAAGAG
AATCAAAACAAATAAGTAACAAAGATCCCCTTGATCACAAGTTTTCAAAGAAGTGGAGAA
CGGGAAGAAACGGGATGAAAATGATGGTATGAAAAGGGGATGGATGTTAGCAGCACTGCT
TCAATAACCAATCTATTTTAAATGAAATACCCTCTTTTATATGCAATAAATTCTGAACAA
GGCTAAACTTTAGGATATTCCTTGAACTGAAATTAAAAATACCCGACAGTGAAAGCAGCT
CTTTCACCTAAGTTTAATAAGAGCCTCTTTCTCCATGAACCACGATGAGAAGAGAAGCCT
GTTCTGGCATCAAAAACTGTCACAGTAGCCCTTCCATCTCTTTCATGAAAGCTTCATAAA
CATCATCCTTAGTTTGTACTGAGACAGGAACAGCTGGACCAGATTTGGGGGCCGCTTTGG
CAAGAGGCACAGCAGAATCATCCTCTGACTTTCTCTGGGGAGTAGCAGTAGCCCCTTTAT
TCTCCCGACGAACCCTCAGTGCAGTGGGCACGAATCGAGTAATCTCTGCCTTGGGATTAG
TGATCTGTGGCTTGGCACTGATGGTTGCTGTGGCTTTCTTCTCAATGGTGGCTGCACTTG
TATCATCCGCCTTGGGTCGCTGAATCAAGTTGGGTGGAGCACTTAAAACCCCCGGGTTCG
GCAAGGGAGCTGGTGGGAAAAGCCCAGGTGGGGCAGGTCCAAGTGGAGGCACCAAAGGTG
GGCGCATCATGCCAGGACGAGGTGGAGGGATACCTGGAGGTGCAGGGGGAGGTAGCCTTG
GTGGGGGTCCCCGAGGAGGAGGGCCAGGAGGCAGACCTGGAGGTGGACCTGGGGGAGGGC
CAGGGGGTCGGCCTGGTGGTGGCCCTGGAGGTAAAAGTCGGGGTAAAGGCCCTCGGAGTC
CTGGCATTCCAG

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               207-307, - strand, RNAz p=0.648918
               

               
               616-735, - strand, RNAz p=0.602837
               

               
               974-1209, + strand, RNAz p=0.988849

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               207-307, - strand, RNAz p=0.648918
               

               
               616-735, - strand, RNAz p=0.602837
               

               
               974-1209, + strand, RNAz p=0.988849

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               1155-1251, + strand, RNAmicro p=0.93131

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1155-1251, + strand, RNAmicro p=0.93131

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               26-1212, gnl|bosTau2|chr13 (55387455-55386269)
               

               
               26-1212, gnl|Hg17|chrX (79624333-79623119)
               

               
               26-1212, gnl|Mm7|chr6 (136838212-136840765)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               26-1212, gnl|bosTau2|chr13 (55387455-55386269)
               

               
               26-1212, gnl|Hg17|chrX (79624333-79623119)
               

               
               26-1212, gnl|Mm7|chr6 (136838212-136840765)

Expressed library(ies): 30 entry(ies)

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Expressed library(ies): 30 entry(ies)

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               pro (0.512033)
               

               
               lin (0.436808)
               

               
               tes (0.415628)
               

               
               ova (0.258264)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 30 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               lin (0.436808)
               

               
               tes (0.415628)
               

               
               ova (0.258264)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	207-307, - strand, RNAz p=0.648918
	616-735, - strand, RNAz p=0.602837
	974-1209, + strand, RNAz p=0.988849

	26-1212, gnl\|bosTau2\|chr13 (55387455-55386269)
	26-1212, gnl\|Hg17\|chrX (79624333-79623119)
	26-1212, gnl\|Mm7\|chr6 (136838212-136840765)

	pro (0.512033)
	lin (0.436808)
	tes (0.415628)
	ova (0.258264)
	mgp (0.230681)
	spc (0.226732)
	fcc (0.197785)
	aor (0.195274)
	mgm (0.180343)
	gul (0.177588)
	fty (0.17584)
	sin (0.174948)
	rec (0.17307)
	duo (0.172801)
	fhi (0.169578)
	csp (0.161186)
	liv (0.146284)
	spl (0.143184)
	cst (0.140036)
	ste (0.135208)
	lyg (0.133103)
	kid (0.129735)
	sug (0.127291)
	thg (0.126791)
	bla (0.124347)
	tra (0.123092)
	ebs (0.118301)
	med (0.116252)
	jca (0.11396)
	jej (0.0989218)