Non-Coding RNA Search

Ss1.1-Pig4-TMW8054H17.5

Sequence:


               
               CGTGGGCATTGTCCGTGAGTGCGGGTGAGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGT
GAAAGCCGGTGGATGGGTCCACCGTTTAGCCTGTATTGATGCACCAAATGCAAGTGCCTC
ATTTCTGTGCCAAATGTTTGCCTTGGTCTTTGCGGACCTTTCCTGACATGTGGCAGCGCG
GCTGTTTAGGAGAATGTGCCAGTATCTTCCAGAAGCCTGCTGCCTTGGTCCCCCGTGCTG
GGGGCATCTAACATTTCCGTTTTTCATTCATGGCAGGAACGCGGCCAGGGGAGCGGAGGA
TTGCGCTGTCCCCAAGGGGCGCCTGCTCCCGAGATGCTGGTACCCAACTTTGACCCAAAG
ACCACAGGCCAGGTCCCTCATCCTTCCAATGAAGGAAGAAAAGGCTTGTGTAGAAATAGG
AGCCAGAGAGGATGCGGGATGGAGAGGCATAAGCTGCCCAAATCACAGAGGGTGTCAGGG
CCGCCCCCAGCCGTCCTGCAGAGCATTTAAGCCGAGACATTGGCTGTTTAAACTGACCGG
CAGCTGAGACTCTCACTCTTAGTGGTCAAGGGCATCAGGAAGGTGCCTTCCAGCAAATAG
CTCCCACTGAGGAGCCAATTCCCTAGTTTCTGAGGAGCTGGTACAACAAGGTGTTACATG
TGCATTGAATGGAACAAGGTGAGTCCATGAACTTCATGCTCAGACCTTGGCCAAGCCCCA
CCCCTAACATTGGCTCCGGGGCACTCGGGGGAGGGGCATCCTCAGGCATCTGGGCACAGG
GGTACTCTCCCGGGGCGTGCGCGAGGACTGCGCCCTTCAAGTGTCATAGCCAGGGTCCTG
TTAACCTGCTCATTAACCCACGCTGTGTTCCTGCATTGTTAACCTGTAACCGTGTTATGT
CACCGCGTTTAAGGGCCCCCGTGTGTATCTTCAGCAGCAGAGACCTCATCACGTCTCCTT
ATCTGCCTTACCCAGTAGTGGATATTTTTACTTTTCTTATATTGTAAAGAATATATCCAG
TATGTAAATGAATGTTCTATAAATCCTTTGTATAGTCATGTGCTCTGCTCTTTAAATATC
ATCTCTATTCAGAGTATAATAAAGTTATAAGCTTGGTAAGCCTCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTGGGCATTGTCCGTGAGTGCGGGTGAGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGT
GAAAGCCGGTGGATGGGTCCACCGTTTAGCCTGTATTGATGCACCAAATGCAAGTGCCTC
ATTTCTGTGCCAAATGTTTGCCTTGGTCTTTGCGGACCTTTCCTGACATGTGGCAGCGCG
GCTGTTTAGGAGAATGTGCCAGTATCTTCCAGAAGCCTGCTGCCTTGGTCCCCCGTGCTG
GGGGCATCTAACATTTCCGTTTTTCATTCATGGCAGGAACGCGGCCAGGGGAGCGGAGGA
TTGCGCTGTCCCCAAGGGGCGCCTGCTCCCGAGATGCTGGTACCCAACTTTGACCCAAAG
ACCACAGGCCAGGTCCCTCATCCTTCCAATGAAGGAAGAAAAGGCTTGTGTAGAAATAGG
AGCCAGAGAGGATGCGGGATGGAGAGGCATAAGCTGCCCAAATCACAGAGGGTGTCAGGG
CCGCCCCCAGCCGTCCTGCAGAGCATTTAAGCCGAGACATTGGCTGTTTAAACTGACCGG
CAGCTGAGACTCTCACTCTTAGTGGTCAAGGGCATCAGGAAGGTGCCTTCCAGCAAATAG
CTCCCACTGAGGAGCCAATTCCCTAGTTTCTGAGGAGCTGGTACAACAAGGTGTTACATG
TGCATTGAATGGAACAAGGTGAGTCCATGAACTTCATGCTCAGACCTTGGCCAAGCCCCA
CCCCTAACATTGGCTCCGGGGCACTCGGGGGAGGGGCATCCTCAGGCATCTGGGCACAGG
GGTACTCTCCCGGGGCGTGCGCGAGGACTGCGCCCTTCAAGTGTCATAGCCAGGGTCCTG
TTAACCTGCTCATTAACCCACGCTGTGTTCCTGCATTGTTAACCTGTAACCGTGTTATGT
CACCGCGTTTAAGGGCCCCCGTGTGTATCTTCAGCAGCAGAGACCTCATCACGTCTCCTT
ATCTGCCTTACCCAGTAGTGGATATTTTTACTTTTCTTATATTGTAAAGAATATATCCAG
TATGTAAATGAATGTTCTATAAATCCTTTGTATAGTCATGTGCTCTGCTCTTTAAATATC
ATCTCTATTCAGAGTATAATAAAGTTATAAGCTTGGTAAGCCTCAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               44-138, - strand, RNAz p=0.786903
               

               
               325-438, + strand, RNAz p=0.833144

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               44-138, - strand, RNAz p=0.786903
               

               
               325-438, + strand, RNAz p=0.833144

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of CR749644, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of CR749644, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               44-1125, gnl|bosTau2|chr4 (44388140-44389227)
               

               
               44-1125, gnl|Hg17|chr7 (47089180-47087986)
               

               
               44-1125, gnl|Mm7|chr11 (8384734-8383661)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               44-1125, gnl|bosTau2|chr4 (44388140-44389227)
               

               
               44-1125, gnl|Hg17|chr7 (47089180-47087986)
               

               
               44-1125, gnl|Mm7|chr11 (8384734-8383661)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               cst (0.280073)
               

               
               cly (0.241284)
               

               
               clu (0.239292)
               

               
               jca (0.22792)
               

               
               fli (0.202881)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               cje (0.165235)
               

               
               cag (0.151194)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               cty (0.10408)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.280073)
               

               
               cly (0.241284)
               

               
               clu (0.239292)
               

               
               jca (0.22792)
               

               
               fli (0.202881)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               cje (0.165235)
               

               
               cag (0.151194)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               cty (0.10408)

	44-138, - strand, RNAz p=0.786903
	325-438, + strand, RNAz p=0.833144

	44-1125, gnl\|bosTau2\|chr4 (44388140-44389227)
	44-1125, gnl\|Hg17\|chr7 (47089180-47087986)
	44-1125, gnl\|Mm7\|chr11 (8384734-8383661)

	cst (0.280073)
	cly (0.241284)
	clu (0.239292)
	jca (0.22792)
	fli (0.202881)
	nlu (0.191681)
	fbs (0.175346)
	cje (0.165235)
	cag (0.151194)
	nmm (0.132802)
	cov (0.132153)
	cty (0.10408)