Ss1.1-Pig4-TMW8054H18.3
|
TTCTAAGAGGCAAGCTGGAGTTTTTTAGGTACAATGAGGCCTAGTTCTTATAGCTGCAGG
ATAGGGTCTTTTTCTAATAGACTGCTACTCTATTGAAAGGTTGTAGCCATTTAGGGTCTT
CGTTTTAAAAACAGTTAATTTGTTGCTTGGAGGGAACTGAGGAAGGGAATATAGCCCCTG
GCCCAGTATTGCTCTGAGGTCTCAAATGATTTTTCTGGGAAACCTTGCAAGGGGTGCAGG
AGCTTCAGTGTAGCTTTGTCTTCTTGACTTAATTCCTAGAAATTCTGTATTGGGAATCTC
AGGAAACAGACTATGATAGGAGAAGTTCAAACACATGGCCTGTCTTGTGTTCATTTAATT
ATTTGGAACAATTGAAATCTTTCTAGGCCCTGATTTCTCTCACTGGCTCTTTATTTCCAA
CTACTTAGCAGTCACCTCTGCAGTAAGGGGCTCGGGTAGCCAGCTCAGCTCCTTAATTCT
TGAGGCAGCATCCTTTTTCTATTTGGATTTCAGCTCTGAACTTGAATCCTGACTAGATGT
TTCTGTTCTCACATTCTCTTGGCTTTTATTCCTTGATCCACATGTCAGTTTTATCACTTG
ACCTCATGGTTTCCCATCAAGCCAGAGGGAGTAAGGGGAGGTATTTGATGACATACAAGT
CATGTGCCTTGTGGATCATGTTTTATTAGCTTCTGGTTTTGCTGAAATAACAACCAAAAC
GTTTCGGTTTGGATAGGAATGGGTACTTTATTAAGTTGATTAAAAGGACACTGTACCTTT
AGGAAAATACAGTTAAAACCTTGATGTGGATTAGCTTAAAGAAAAATCATCAGGCAAAAA
TCAAGATTGGGGGTTGAGAGGAGAGATGGATGGGAATTTAACTTTACAAAACTCAATTTT
AAGGAAAACATGACTATTTCAATACATGAAGCTATGGAGTTCCCACTGTGGCACAACAGG
ATCAAGTGCTGGGATGCCGGTTCTGTCCCCGGTCAGGCCTGGTGGGTTAAAGGATCCAGC
TGTGCTGCAGCTGTGGCATAGCTCGGAGCTGATCCCTGGGCCAGGAACTCCATATGCTGC
AGGGCGGCCAAATAAATAAATAAATGAAGCTAAAGTTTTTCCTGAATCCCTGAATTCAAA
CCATATTTATAAATGTATACTGCAGCTACCATGTGCTTAAATAGGCTTGTTGAGCTAACC
TGGGAAATGTTATTGTTTTTACTGTTTTCTACAGAGAAAATATTTTACAATTTAGGTATC
AATTCAATGAACTTTTAAAATACAATCAATTTTTATGTTGGAACTATCTGTGCAGCAGTT
TCTTTACAGTTGTACATAAGATGTTTTTACTGTAAAATTGAGTTAATGTATGAAAATAAG
GCTTTACGCCATAATAAAGATATTAGTACTTACTAAAAAAAAAAAAAAAAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTCTAAGAGGCAAGCTGGAGTTTTTTAGGTACAATGAGGCCTAGTTCTTATAGCTGCAGG
ATAGGGTCTTTTTCTAATAGACTGCTACTCTATTGAAAGGTTGTAGCCATTTAGGGTCTT
CGTTTTAAAAACAGTTAATTTGTTGCTTGGAGGGAACTGAGGAAGGGAATATAGCCCCTG
GCCCAGTATTGCTCTGAGGTCTCAAATGATTTTTCTGGGAAACCTTGCAAGGGGTGCAGG
AGCTTCAGTGTAGCTTTGTCTTCTTGACTTAATTCCTAGAAATTCTGTATTGGGAATCTC
AGGAAACAGACTATGATAGGAGAAGTTCAAACACATGGCCTGTCTTGTGTTCATTTAATT
ATTTGGAACAATTGAAATCTTTCTAGGCCCTGATTTCTCTCACTGGCTCTTTATTTCCAA
CTACTTAGCAGTCACCTCTGCAGTAAGGGGCTCGGGTAGCCAGCTCAGCTCCTTAATTCT
TGAGGCAGCATCCTTTTTCTATTTGGATTTCAGCTCTGAACTTGAATCCTGACTAGATGT
TTCTGTTCTCACATTCTCTTGGCTTTTATTCCTTGATCCACATGTCAGTTTTATCACTTG
ACCTCATGGTTTCCCATCAAGCCAGAGGGAGTAAGGGGAGGTATTTGATGACATACAAGT
CATGTGCCTTGTGGATCATGTTTTATTAGCTTCTGGTTTTGCTGAAATAACAACCAAAAC
GTTTCGGTTTGGATAGGAATGGGTACTTTATTAAGTTGATTAAAAGGACACTGTACCTTT
AGGAAAATACAGTTAAAACCTTGATGTGGATTAGCTTAAAGAAAAATCATCAGGCAAAAA
TCAAGATTGGGGGTTGAGAGGAGAGATGGATGGGAATTTAACTTTACAAAACTCAATTTT
AAGGAAAACATGACTATTTCAATACATGAAGCTATGGAGTTCCCACTGTGGCACAACAGG
ATCAAGTGCTGGGATGCCGGTTCTGTCCCCGGTCAGGCCTGGTGGGTTAAAGGATCCAGC
TGTGCTGCAGCTGTGGCATAGCTCGGAGCTGATCCCTGGGCCAGGAACTCCATATGCTGC
AGGGCGGCCAAATAAATAAATAAATGAAGCTAAAGTTTTTCCTGAATCCCTGAATTCAAA
CCATATTTATAAATGTATACTGCAGCTACCATGTGCTTAAATAGGCTTGTTGAGCTAACC
TGGGAAATGTTATTGTTTTTACTGTTTTCTACAGAGAAAATATTTTACAATTTAGGTATC
AATTCAATGAACTTTTAAAATACAATCAATTTTTATGTTGGAACTATCTGTGCAGCAGTT
TCTTTACAGTTGTACATAAGATGTTTTTACTGTAAAATTGAGTTAATGTATGAAAATAAG
GCTTTACGCCATAATAAAGATATTAGTACTTACTAAAAAAAAAAAAAAAAAAAAAAAAAA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
39-709, gnl|bosTau2|chr11 (44865162-44864473) |
|
39-709, gnl|Hg17|chr10 (70413665-70414330) |
| |
|
1099-1421, gnl|bosTau2|chr11 (44864302-44863975) |
|
1099-1421, gnl|canFam2|chr4 (23339586-23340297) |
|
1099-1421, gnl|dasNov1|scaffold_238 (154405-153766) |
|
1099-1421, gnl|echTel1|scaffold_299018 (47589-48319) |
|
1099-1421, gnl|Hg17|chr10 (70414557-70414828) |
|
1099-1421, gnl|hg17|chr8 (13581198-13581845) |
|
1099-1421, gnl|loxAfr1|scaffold_17278 (44949-45651) |
|
1099-1421, gnl|mm7|chr10 (62099632-62099053) |
|
1099-1421, gnl|Mm7|chr10 (62099332-62099058) |
|
1099-1421, gnl|oryCun1|scaffold_211529 (193930-193232) |
|
1099-1421, gnl|panTro1|chr7 (14187959-14188606) |
|
1099-1421, gnl|rheMac2|chr8 (13491605-13492255) |
|
1099-1421, gnl|rn3|chr20 (29853065-29852480) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
39-709, gnl|bosTau2|chr11 (44865162-44864473) |
|
39-709, gnl|Hg17|chr10 (70413665-70414330) |
| |
|
1099-1421, gnl|bosTau2|chr11 (44864302-44863975) |
|
1099-1421, gnl|canFam2|chr4 (23339586-23340297) |
|
1099-1421, gnl|dasNov1|scaffold_238 (154405-153766) |
|
1099-1421, gnl|echTel1|scaffold_299018 (47589-48319) |
|
1099-1421, gnl|Hg17|chr10 (70414557-70414828) |
|
1099-1421, gnl|hg17|chr8 (13581198-13581845) |
|
1099-1421, gnl|loxAfr1|scaffold_17278 (44949-45651) |
|
1099-1421, gnl|mm7|chr10 (62099632-62099053) |
|
1099-1421, gnl|Mm7|chr10 (62099332-62099058) |
|
1099-1421, gnl|oryCun1|scaffold_211529 (193930-193232) |
|
1099-1421, gnl|panTro1|chr7 (14187959-14188606) |
|
1099-1421, gnl|rheMac2|chr8 (13491605-13492255) |
|
1099-1421, gnl|rn3|chr20 (29853065-29852480) |
|
cut (0.509771) |
|
cki (0.495704) |
|
amn (0.417711) |
|
sme (0.305437) |
|
che (0.272628) |
|
fce (0.271592) |
|
aor (0.195274) |
|
ldo (0.194005) |
|
cmu (0.186393) |
|
ill (0.175593) |
|
ton (0.1755) |
|
sin (0.174948) |
|
rec (0.17307) |
|
fhi (0.169578) |
|
nco (0.161734) |
|
isp (0.150376) |
|
liv (0.146284) |
|
spl (0.143184) |
|
lnt (0.142308) |
|
csk (0.140746) |
|
hlv (0.139256) |
|
nca (0.136874) |
|
pla (0.133672) |
|
ute (0.132784) |
|
sug (0.127291) |
|
bla (0.124347) |
|
eep (0.122564) |
|
pgl (0.118483) |
|
cty (0.10408) |
|
eje (0.0988338) |
|
cut (0.509771) |
|
cki (0.495704) |
|
amn (0.417711) |
|
sme (0.305437) |
|
che (0.272628) |
|
fce (0.271592) |
|
aor (0.195274) |
|
ldo (0.194005) |
|
cmu (0.186393) |
|
ill (0.175593) |
|
ton (0.1755) |
|
sin (0.174948) |
|
rec (0.17307) |
|
fhi (0.169578) |
|
nco (0.161734) |
|
isp (0.150376) |
|
liv (0.146284) |
|
spl (0.143184) |
|
lnt (0.142308) |
|
csk (0.140746) |
|
hlv (0.139256) |
|
nca (0.136874) |
|
pla (0.133672) |
|
ute (0.132784) |
|
sug (0.127291) |
|
bla (0.124347) |
|
eep (0.122564) |
|
pgl (0.118483) |
|
cty (0.10408) |
|
eje (0.0988338) |
