Non-Coding RNA Search

Ss1.1-Pig4-TMW8054H23.3

Sequence:


               
               GGTCTTTGACTATGTCAGTATAAAGTAAGCTCACTATAAAAAAAAATGGCTAAAAGTCTA
GATTAAAGGAGTGTAGGCAGTTGAAAGGAAAATTTTTAGTAATTAAATAATTCACACCTT
GGAGGGCTGAAGGACGGGAGGCTGCAGAAATCATGTTGAGTTTTTTTTAAAGTTACTTTA
AGTAAATTTGTAAATATAGTGCTAGTTTCAAGAAAAAGTACATAGAGGTTATTTCTTCTA
AGCTATCTCATTTGTTGCTATTAAAATTTTTGTAGCCATATTACAGATGAGAAAAAGCAG
GTTGATTCGATTATAGGAATTCGATATGAAGCGAATTTTTGTAAAGCAGCAGACACAAAT
AGAAGAGGAATATGACAATAAACTCACAGAGGAACTTAGTGGTATATACCTCTTAAAACA
AATAGTTCTTAATAATTTGGTGTTTTAACTTAGGGACTTATATTTATAGCTTGTGAGTAT
GCTGTTTACACCTATCACTGATTTTTTATCACTTCATGGTGATAACTTATAAATGTAATA
ACACTGACTCCTGTATATGTGATTTTAAAACTATTTAAGACTTGGTAAAGGTTCAGTAAA
CCAAACACCTTAGAAAATAGCACCAGCTGTTTGCTAGGTTAGGTCATACATGTGTAAATG
TGTGTGTGTATATGTGTGTGTGTGTGTATACATACATACATACACATGTATATACACTTA
CCTTTACACAGTAAGAACCTAAAAATTGTATGTAAATTGATTGCTTTTGAATATAAGCAG
TTTAAATAAAGCCTGTGGTGAGTCCTTTTATTGTTGTCAGTCAGTCAACACTAACTGTTT
TGTAAATTTGATTCTAATATATTGGGCTTTTTCAAGGTGAAACCTGTATATGCATATGAA
ATATGAGCATGCATATATGTACAAAAGCCCTTTTTAAAGAAGTTCAGCTTTCTTTCATAG
ATACCAAAACTCACTCTGCCTGTAAAATGTTTTCGCTCAAGTTTGCATTGACTCCCAGAT
TTACACCTTTCTGTTCACATGCGCTACTAGGAATATCTATGCATGTTGATTCTTGTCAGT
GCGCTCTCTTTCCCCCTCAATAAATTAGTTCACTTTTAAAAATTGTGACCATTTCTATAC
AATGAATGTTCATAAAACAAGCTAGCATATTCAGCTTATACAGAAATAAAAATTAAATAC
CCCACTTAAGACAAGGAATTTCTATTTTGTAAACATGTAGCTTGTATTTCGGAGTATAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTCTTTGACTATGTCAGTATAAAGTAAGCTCACTATAAAAAAAAATGGCTAAAAGTCTA
GATTAAAGGAGTGTAGGCAGTTGAAAGGAAAATTTTTAGTAATTAAATAATTCACACCTT
GGAGGGCTGAAGGACGGGAGGCTGCAGAAATCATGTTGAGTTTTTTTTAAAGTTACTTTA
AGTAAATTTGTAAATATAGTGCTAGTTTCAAGAAAAAGTACATAGAGGTTATTTCTTCTA
AGCTATCTCATTTGTTGCTATTAAAATTTTTGTAGCCATATTACAGATGAGAAAAAGCAG
GTTGATTCGATTATAGGAATTCGATATGAAGCGAATTTTTGTAAAGCAGCAGACACAAAT
AGAAGAGGAATATGACAATAAACTCACAGAGGAACTTAGTGGTATATACCTCTTAAAACA
AATAGTTCTTAATAATTTGGTGTTTTAACTTAGGGACTTATATTTATAGCTTGTGAGTAT
GCTGTTTACACCTATCACTGATTTTTTATCACTTCATGGTGATAACTTATAAATGTAATA
ACACTGACTCCTGTATATGTGATTTTAAAACTATTTAAGACTTGGTAAAGGTTCAGTAAA
CCAAACACCTTAGAAAATAGCACCAGCTGTTTGCTAGGTTAGGTCATACATGTGTAAATG
TGTGTGTGTATATGTGTGTGTGTGTGTATACATACATACATACACATGTATATACACTTA
CCTTTACACAGTAAGAACCTAAAAATTGTATGTAAATTGATTGCTTTTGAATATAAGCAG
TTTAAATAAAGCCTGTGGTGAGTCCTTTTATTGTTGTCAGTCAGTCAACACTAACTGTTT
TGTAAATTTGATTCTAATATATTGGGCTTTTTCAAGGTGAAACCTGTATATGCATATGAA
ATATGAGCATGCATATATGTACAAAAGCCCTTTTTAAAGAAGTTCAGCTTTCTTTCATAG
ATACCAAAACTCACTCTGCCTGTAAAATGTTTTCGCTCAAGTTTGCATTGACTCCCAGAT
TTACACCTTTCTGTTCACATGCGCTACTAGGAATATCTATGCATGTTGATTCTTGTCAGT
GCGCTCTCTTTCCCCCTCAATAAATTAGTTCACTTTTAAAAATTGTGACCATTTCTATAC
AATGAATGTTCATAAAACAAGCTAGCATATTCAGCTTATACAGAAATAAAAATTAAATAC
CCCACTTAAGACAAGGAATTTCTATTTTGTAAACATGTAGCTTGTATTTCGGAGTATAAT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               688-785, - strand, RNAz p=0.995821
               

               
               860-959, + strand, RNAz p=0.985752

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               688-785, - strand, RNAz p=0.995821
               

               
               860-959, + strand, RNAz p=0.985752

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-660, gnl|bosTau2|chr12 (2750550-2749916)
               

               
               1-660, gnl|Hg17|chr13 (52171816-52172468)
               


               
               688-1260, gnl|bosTau2|chr12 (2749922-2749372)
               

               
               688-1260, gnl|Hg17|chr13 (52172463-52173027)
               

               
               688-1260, gnl|Mm7|chr14 (74315313-74315865)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-660, gnl|bosTau2|chr12 (2750550-2749916)
               

               
               1-660, gnl|Hg17|chr13 (52171816-52172468)
               


               
               688-1260, gnl|bosTau2|chr12 (2749922-2749372)
               

               
               688-1260, gnl|Hg17|chr13 (52172463-52173027)
               

               
               688-1260, gnl|Mm7|chr14 (74315313-74315865)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               fcc (0.197785)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               ssp (0.13552)
               

               
               ret (0.128733)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               ssp (0.13552)
               

               
               ret (0.128733)

	688-785, - strand, RNAz p=0.995821
	860-959, + strand, RNAz p=0.985752

	1-660, gnl\|bosTau2\|chr12 (2750550-2749916)
	1-660, gnl\|Hg17\|chr13 (52171816-52172468)

	688-1260, gnl\|bosTau2\|chr12 (2749922-2749372)
	688-1260, gnl\|Hg17\|chr13 (52172463-52173027)
	688-1260, gnl\|Mm7\|chr14 (74315313-74315865)

	fcc (0.197785)
	eye (0.170503)
	fco (0.157208)
	bfe (0.149858)
	liv (0.146284)
	ssp (0.13552)
	ret (0.128733)