Non-Coding RNA Search

Ss1.1-Pig4-TMW8054I08.3

Sequence:


               
               ACTGCAATGGCTTGGGTCTCTGCTGTGGTGTGTTTTCAATACTTGGCCTGAGAAGTTCAC
ATGCCATGGGCACGGCCAAAAAAAATATATTCTAACAAGAATTGTTTCTATGGTTTAATT
TGTTTAAAATATAAAAATACAACACCTTTCTGTTAACATTTAACAACTAATTGACATCTG
GGAAGATTGCTAGTGGCAGATGGGATGGAAAAATGATATTATTTAGTAAATCTACCATTT
AGGTATCCTTTCAGTTGGAACCCCTTATATCCTTACTATCCTAAGGAATCGAAATGTTTA
TTACAACCACAAAAGGAAATAAGATGTACAGTTGTAGGAGTGGAGAGAAAAAAGTTATTT
ATTTTTTTAGCATCTTCACGGCCGAACCTGCAGCATATGGAAGTTCCTGGGCCAGGGGTC
GAACTGGAGCTGCAGTTGAGACCTAAGCCACAGCTGTGGCAACACTGGATTATGCCACAG
CTTGCAGCAGTGCTGGGTTGAATGAGACCAGGGATGAAACTTGCATCCTTGTGGAGACAA
CATTGGGACCTTAACCTGCTGAGCCACAATGGGAACTCCAAAAGAAATAAATTTAAATTT
TTCTGAAGGTGAAAAGACAATACCTAGAGAACAAGTGAATTGACTCAAAAAATACTAGGG
GTTAAAATTTAGCTTGGTATTGTTTCTTTCCTAAATACAATTCAAAATAGATTGAGAACA
CCTGCATACTATGTGATTCCATTGCTGTGACATTCTGGGAAAGGAAGGAGAACAGATCCA
TGGTTGTTTAGGAGCTGGAGGCGGGGGGATTTATTATACAAAGGAGCTCAAAGAAAATTT
TTTGAGTGAGAGTCTTGACTGGTGATGTATGTATGTATGCCTTGTTAGAATTCACAGAAA
TGTATACTTTTATAAAGAAAAGTGAATTTTACGGAATGTAAATTATATCCTAATAAACCA
GATTTTAAAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTGCAATGGCTTGGGTCTCTGCTGTGGTGTGTTTTCAATACTTGGCCTGAGAAGTTCAC
ATGCCATGGGCACGGCCAAAAAAAATATATTCTAACAAGAATTGTTTCTATGGTTTAATT
TGTTTAAAATATAAAAATACAACACCTTTCTGTTAACATTTAACAACTAATTGACATCTG
GGAAGATTGCTAGTGGCAGATGGGATGGAAAAATGATATTATTTAGTAAATCTACCATTT
AGGTATCCTTTCAGTTGGAACCCCTTATATCCTTACTATCCTAAGGAATCGAAATGTTTA
TTACAACCACAAAAGGAAATAAGATGTACAGTTGTAGGAGTGGAGAGAAAAAAGTTATTT
ATTTTTTTAGCATCTTCACGGCCGAACCTGCAGCATATGGAAGTTCCTGGGCCAGGGGTC
GAACTGGAGCTGCAGTTGAGACCTAAGCCACAGCTGTGGCAACACTGGATTATGCCACAG
CTTGCAGCAGTGCTGGGTTGAATGAGACCAGGGATGAAACTTGCATCCTTGTGGAGACAA
CATTGGGACCTTAACCTGCTGAGCCACAATGGGAACTCCAAAAGAAATAAATTTAAATTT
TTCTGAAGGTGAAAAGACAATACCTAGAGAACAAGTGAATTGACTCAAAAAATACTAGGG
GTTAAAATTTAGCTTGGTATTGTTTCTTTCCTAAATACAATTCAAAATAGATTGAGAACA
CCTGCATACTATGTGATTCCATTGCTGTGACATTCTGGGAAAGGAAGGAGAACAGATCCA
TGGTTGTTTAGGAGCTGGAGGCGGGGGGATTTATTATACAAAGGAGCTCAAAGAAAATTT
TTTGAGTGAGAGTCTTGACTGGTGATGTATGTATGTATGCCTTGTTAGAATTCACAGAAA
TGTATACTTTTATAAAGAAAAGTGAATTTTACGGAATGTAAATTATATCCTAATAAACCA
GATTTTAAAAAG

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               87-320, gnl|bosTau2|chr26 (15427859-15428094)
               

               
               87-320, gnl|Hg17|chr10 (104617651-104617902)
               


               
               582-971, gnl|bosTau2|chr26 (15428108-15428502)
               

               
               582-971, gnl|Hg17|chr10 (104618537-104618942)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               87-320, gnl|bosTau2|chr26 (15427859-15428094)
               

               
               87-320, gnl|Hg17|chr10 (104617651-104617902)
               


               
               582-971, gnl|bosTau2|chr26 (15428108-15428502)
               

               
               582-971, gnl|Hg17|chr10 (104618537-104618942)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               fhi (0.339155)
               

               
               lyg (0.266205)
               

               
               ret (0.257467)
               

               
               bla (0.248694)
               

               
               aor (0.195274)
               

               
               ldo (0.194005)
               

               
               sto (0.179824)
               

               
               fco (0.157208)
               

               
               csk (0.140746)
               

               
               spc (0.113366)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.339155)
               

               
               lyg (0.266205)
               

               
               ret (0.257467)
               

               
               bla (0.248694)
               

               
               aor (0.195274)
               

               
               ldo (0.194005)
               

               
               sto (0.179824)
               

               
               fco (0.157208)
               

               
               csk (0.140746)
               

               
               spc (0.113366)

	87-320, gnl\|bosTau2\|chr26 (15427859-15428094)
	87-320, gnl\|Hg17\|chr10 (104617651-104617902)

	582-971, gnl\|bosTau2\|chr26 (15428108-15428502)
	582-971, gnl\|Hg17\|chr10 (104618537-104618942)

	fhi (0.339155)
	lyg (0.266205)
	ret (0.257467)
	bla (0.248694)
	aor (0.195274)
	ldo (0.194005)
	sto (0.179824)
	fco (0.157208)
	csk (0.140746)
	spc (0.113366)