Non-Coding RNA Search

Ss1.1-Pig4-TMW8054I11.3

Sequence:


               
               GGACTGCCAAAGTTTCCTGATGGCACTGCATGGATGTCTTAACATTCCCTCCTGAAAGGC
TGAGACAGAGGAATTCTGCATTTTCCCAGTTTAGCCTCTAAGGAAGCCTAGCTCTGGGGT
GGAAGGAAAGGAAATTAACATTTAGGGAAGAGATGGTGAAGATAACTAGTGGGTGGCAGG
AGAGATCTGGGTTAGTGCCTGTTAAATAGTGTCAGCGTCTTGGAAAGAAAGTGCAGAAAT
GATTCACTAGGAGAGCTCTCAGAAGAGCTGACTCATAGAAGAAAGGTGTCTGAAAAATAA
GAACCTCCAGTAGAATAACTTGCCTTTTTAATAGTTTTGACCACTCTGATAGTCAAATTC
ATTTGATGACAAGAATGCCAAACCTAAAATAGCCCTTCAAGGACTCTAAAGCAAATGTCC
ACAGATCACCATTGGTAGAGCAAAACATTTCTTACTATTAAAAGGGCAGCAGGCTACAAG
AAAGAAAAAGTAGTACTGAATATGGTGATGAAAGCCATTTCTAAAATGGGAATCAGGTGC
TTAAAGGGAAAAGGTTGATCCAGGATTCTGTCCCATTTCTCTGATTTTCATCTCTACATC
TACATCTCATATAGCACAAATGCCATTTTCTTCCAAAATCCTTTAAGAAATAGGGGTTTA
CCCTTGAGTGAAAGTTTCATCTTGAGTTTTTTCCTCCTCTAAAAAAAGTTGGGCCATAAG
AAACATCAAGGAAGTAATGTAAAGAATACCTGCTATTAGTTTAAGAAGGCTAGCATATTC
AGAATGCTTCTTATACTACACTGCCTCATTGTAACATATAATTCCTTACTTCACTTCTTT
ATTCTTCTGATAGTGTGGTATCCAGGCAACAGAGCACTTCTGCTATGTAATTCTGAGATT
TCCCATTCCTAGAGTACCTGAGCCAACGACTAGGCTTTGGTGGCTCCAGCTGTACCATCA
CTTGCACTTTGCTCTTAGCATTATTTATTACCTCTGAGCCTAAGGATTTCTGCCTATACC
TCCAAAAGCCAGAATCAGTCCCCTTTGCACGAAAAGGTTTAGATTATTTGAACATGTTAG
TTATTAGGAAACTAAAATGCCACTGAATATCCAGATTATTTTGGAAATCAGTTCACACAG
GAAATCTACAAAAATGTCACAAAACAACCTGAAATCTGAGAAATTCTAGGAATCCAAGAT
TCTGGGAGATAAGGTGCTAAAGTCTCAGCCATGACAGTGCCCTTCTCCTTCAGTCAGGCT
TTTGGGTTCAGATACACAGGTGTGAAGATAAAGTCTGAGCCACTACTGGTTTCAAACTGT
ATTCTATTAACTTTGCAAGTCAAATAATATGATCTTTAATATAAAACAGAAAAGGATAAA
TCATGTAAGAAAAAGTGTTTGTAGGAAGAGATACAGATGAAATGATGAGGATGTTTAGAG
AATAACCATTCAATAAAATATGAACACTAAACTTACAATTGTAAAATAAGGAAGTGGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACTGCCAAAGTTTCCTGATGGCACTGCATGGATGTCTTAACATTCCCTCCTGAAAGGC
TGAGACAGAGGAATTCTGCATTTTCCCAGTTTAGCCTCTAAGGAAGCCTAGCTCTGGGGT
GGAAGGAAAGGAAATTAACATTTAGGGAAGAGATGGTGAAGATAACTAGTGGGTGGCAGG
AGAGATCTGGGTTAGTGCCTGTTAAATAGTGTCAGCGTCTTGGAAAGAAAGTGCAGAAAT
GATTCACTAGGAGAGCTCTCAGAAGAGCTGACTCATAGAAGAAAGGTGTCTGAAAAATAA
GAACCTCCAGTAGAATAACTTGCCTTTTTAATAGTTTTGACCACTCTGATAGTCAAATTC
ATTTGATGACAAGAATGCCAAACCTAAAATAGCCCTTCAAGGACTCTAAAGCAAATGTCC
ACAGATCACCATTGGTAGAGCAAAACATTTCTTACTATTAAAAGGGCAGCAGGCTACAAG
AAAGAAAAAGTAGTACTGAATATGGTGATGAAAGCCATTTCTAAAATGGGAATCAGGTGC
TTAAAGGGAAAAGGTTGATCCAGGATTCTGTCCCATTTCTCTGATTTTCATCTCTACATC
TACATCTCATATAGCACAAATGCCATTTTCTTCCAAAATCCTTTAAGAAATAGGGGTTTA
CCCTTGAGTGAAAGTTTCATCTTGAGTTTTTTCCTCCTCTAAAAAAAGTTGGGCCATAAG
AAACATCAAGGAAGTAATGTAAAGAATACCTGCTATTAGTTTAAGAAGGCTAGCATATTC
AGAATGCTTCTTATACTACACTGCCTCATTGTAACATATAATTCCTTACTTCACTTCTTT
ATTCTTCTGATAGTGTGGTATCCAGGCAACAGAGCACTTCTGCTATGTAATTCTGAGATT
TCCCATTCCTAGAGTACCTGAGCCAACGACTAGGCTTTGGTGGCTCCAGCTGTACCATCA
CTTGCACTTTGCTCTTAGCATTATTTATTACCTCTGAGCCTAAGGATTTCTGCCTATACC
TCCAAAAGCCAGAATCAGTCCCCTTTGCACGAAAAGGTTTAGATTATTTGAACATGTTAG
TTATTAGGAAACTAAAATGCCACTGAATATCCAGATTATTTTGGAAATCAGTTCACACAG
GAAATCTACAAAAATGTCACAAAACAACCTGAAATCTGAGAAATTCTAGGAATCCAAGAT
TCTGGGAGATAAGGTGCTAAAGTCTCAGCCATGACAGTGCCCTTCTCCTTCAGTCAGGCT
TTTGGGTTCAGATACACAGGTGTGAAGATAAAGTCTGAGCCACTACTGGTTTCAAACTGT
ATTCTATTAACTTTGCAAGTCAAATAATATGATCTTTAATATAAAACAGAAAAGGATAAA
TCATGTAAGAAAAAGTGTTTGTAGGAAGAGATACAGATGAAATGATGAGGATGTTTAGAG
AATAACCATTCAATAAAATATGAACACTAAACTTACAATTGTAAAATAAGGAAGTGGTGT

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-468, gnl|bosTau2|chr15 (23824670-23824179)
               

               
               1-468, gnl|Hg17|chr11 (122448102-122447638)
               

               
               1-468, gnl|Mm7|chr9 (40714137-40714619)
               


               
               694-1499, gnl|bosTau2|chr15 (23823587-23822772)
               

               
               694-1499, gnl|Hg17|chr11 (122446804-122446009)
               

               
               694-1499, gnl|Mm7|chr9 (40714900-40715743)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-468, gnl|bosTau2|chr15 (23824670-23824179)
               

               
               1-468, gnl|Hg17|chr11 (122448102-122447638)
               

               
               1-468, gnl|Mm7|chr9 (40714137-40714619)
               


               
               694-1499, gnl|bosTau2|chr15 (23823587-23822772)
               

               
               694-1499, gnl|Hg17|chr11 (122446804-122446009)
               

               
               694-1499, gnl|Mm7|chr9 (40714900-40715743)

Expressed library(ies): 19 entry(ies)

More info

Expressed library(ies): 19 entry(ies)

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               fat (0.737137)
               

               
               gul (0.355177)
               

               
               csk (0.281492)
               

               
               cbe (0.239234)
               

               
               jca (0.22792)
               

               
               cmu (0.186393)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               eye (0.170503)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               eje (0.0988338)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.737137)
               

               
               gul (0.355177)
               

               
               csk (0.281492)
               

               
               cbe (0.239234)
               

               
               jca (0.22792)
               

               
               cmu (0.186393)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               eye (0.170503)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               eje (0.0988338)

	1-468, gnl\|bosTau2\|chr15 (23824670-23824179)
	1-468, gnl\|Hg17\|chr11 (122448102-122447638)
	1-468, gnl\|Mm7\|chr9 (40714137-40714619)

	694-1499, gnl\|bosTau2\|chr15 (23823587-23822772)
	694-1499, gnl\|Hg17\|chr11 (122446804-122446009)
	694-1499, gnl\|Mm7\|chr9 (40714900-40715743)

	fat (0.737137)
	gul (0.355177)
	csk (0.281492)
	cbe (0.239234)
	jca (0.22792)
	cmu (0.186393)
	mgm (0.180343)
	sto (0.179824)
	fty (0.17584)
	eye (0.170503)
	mga (0.160205)
	fco (0.157208)
	lin (0.145603)
	pla (0.133672)
	ova (0.129132)
	sug (0.127291)
	thg (0.126791)
	bla (0.124347)
	eje (0.0988338)