Non-Coding RNA Search

Ss1.1-Pig4-TMW8054I15.3

Sequence:


               
               CTCTTTTACATCTTTCAGATTTGAATTCCTTAGTCAGCTTCTGCTTATAGGAACAAAAGA
AGTGAAAGGTCATCTGTGTGTGTTTGGAGGTGTTTTGTTTTTTTTTTGTTTTTTTTTTCT
TTATTTTAGGACGGCTGGGAGAGGCGATAAGGGAAAAGGAAGAAGTTGTGGAATGGGGAA
GGGAAGAGGGGAAAAGTCTTCAAGATGAAATGTTAAAATAAGCCACTGAGACTCAGGATT
GGCCAAACATACATATGTGAAATCCATCCTCAGTGAATTCTATTGGGATTTGTTTTCCAC
ATTTTCTTTTTGTTCCCCTTTAAGAAATTTTTAGTCCTCCCAAAGATTTGAAGCATGTAT
GTGACAAGGTTTAGTATATTTGTTCACTCAGCTCTTAAAGAATGGGTAAATTCAGAGCAG
CTTCTTTTGGTCATATCCTGAGAGTATTTTTTAAGAAATATAATTATTGGTAAACCATTT
GTTACCTAGCTTTCCTGGGCTGTTGAAGGATTTGAATTTCTGTGTGTCTACTTGCTGCAG
TCTAAGTCCTTTAGTGATACTCTTATAACAGATATAAAGATTTACTATGCATGTGATAAA
TTCTATTAAGAGTGCCTCAACCGGAAAAGGAAGTGGAGTTTACCTTATGTGAAGAATGTT
AAAATGTACTACTGTTCATTACTGTACTACTACAGTATTTCGGTTTTAACTTTACATCTC
TAACATCTTTCTCATTTGTCAACTGCTTTGATTTTCTTAGAATCCTAAAATTCTGGATCC
GCCTTATTTTTTTATTGTCTACAAACCATTAAATGAAAATACTGTTTTTAGAATACAGCC
TGTCGGTGGCTTCATCATTTACCGTTTGAGTAAATGAGTGGTGGTACAGTATGGTCTCAT
TTCTTCCCTCCAGGACTGCCAGTATCCATAAATTTATACCCCTCACTGTAATTTGTTCCT
GACTATCAGAAGTCAGATGTTCTAATTTATAGAGGATTCTAAAATAAGAGTTTTTGAAAA
GGCTTATTTTATACATATATGTATTATATGGAGAAACAGATGTTTTTATTAAATGTCTCT
TTGACCAAAATAATTTTAAAGTCACTAATATTACTTGTATCAGGAAAAAATAACTGTAGC
AGCTGATCTGTAAATGACTTTGAAAGCTATTTTAGTAATTTAAATAAATTTACTTTATTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTTTTACATCTTTCAGATTTGAATTCCTTAGTCAGCTTCTGCTTATAGGAACAAAAGA
AGTGAAAGGTCATCTGTGTGTGTTTGGAGGTGTTTTGTTTTTTTTTTGTTTTTTTTTTCT
TTATTTTAGGACGGCTGGGAGAGGCGATAAGGGAAAAGGAAGAAGTTGTGGAATGGGGAA
GGGAAGAGGGGAAAAGTCTTCAAGATGAAATGTTAAAATAAGCCACTGAGACTCAGGATT
GGCCAAACATACATATGTGAAATCCATCCTCAGTGAATTCTATTGGGATTTGTTTTCCAC
ATTTTCTTTTTGTTCCCCTTTAAGAAATTTTTAGTCCTCCCAAAGATTTGAAGCATGTAT
GTGACAAGGTTTAGTATATTTGTTCACTCAGCTCTTAAAGAATGGGTAAATTCAGAGCAG
CTTCTTTTGGTCATATCCTGAGAGTATTTTTTAAGAAATATAATTATTGGTAAACCATTT
GTTACCTAGCTTTCCTGGGCTGTTGAAGGATTTGAATTTCTGTGTGTCTACTTGCTGCAG
TCTAAGTCCTTTAGTGATACTCTTATAACAGATATAAAGATTTACTATGCATGTGATAAA
TTCTATTAAGAGTGCCTCAACCGGAAAAGGAAGTGGAGTTTACCTTATGTGAAGAATGTT
AAAATGTACTACTGTTCATTACTGTACTACTACAGTATTTCGGTTTTAACTTTACATCTC
TAACATCTTTCTCATTTGTCAACTGCTTTGATTTTCTTAGAATCCTAAAATTCTGGATCC
GCCTTATTTTTTTATTGTCTACAAACCATTAAATGAAAATACTGTTTTTAGAATACAGCC
TGTCGGTGGCTTCATCATTTACCGTTTGAGTAAATGAGTGGTGGTACAGTATGGTCTCAT
TTCTTCCCTCCAGGACTGCCAGTATCCATAAATTTATACCCCTCACTGTAATTTGTTCCT
GACTATCAGAAGTCAGATGTTCTAATTTATAGAGGATTCTAAAATAAGAGTTTTTGAAAA
GGCTTATTTTATACATATATGTATTATATGGAGAAACAGATGTTTTTATTAAATGTCTCT
TTGACCAAAATAATTTTAAAGTCACTAATATTACTTGTATCAGGAAAAAATAACTGTAGC
AGCTGATCTGTAAATGACTTTGAAAGCTATTTTAGTAATTTAAATAAATTTACTTTATTG

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

Help | Less info


               
               215-1200, gnl|bosTau2|chr16 (45822978-45823950)

Aligned organism(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               215-1200, gnl|bosTau2|chr16 (45822978-45823950)

Expressed library(ies): 25 entry(ies)

More info

Expressed library(ies): 25 entry(ies)

Help | Less info


               
               rec (0.692281)
               

               
               sug (0.636456)
               

               
               ova (0.516529)
               

               
               ret (0.514933)
               

               
               mga (0.480615)
               

               
               bfe (0.449573)
               

               
               fcc (0.39557)
               

               
               aor (0.390549)
               

               
               gul (0.355177)
               

               
               fat (0.294855)
               

               
               spl (0.286369)
               

               
               lyg (0.266205)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               ste (0.135208)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.692281)
               

               
               sug (0.636456)
               

               
               ova (0.516529)
               

               
               ret (0.514933)
               

               
               mga (0.480615)
               

               
               bfe (0.449573)
               

               
               fcc (0.39557)
               

               
               aor (0.390549)
               

               
               gul (0.355177)
               

               
               fat (0.294855)
               

               
               spl (0.286369)
               

               
               lyg (0.266205)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               ste (0.135208)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	rec (0.692281)
	sug (0.636456)
	ova (0.516529)
	ret (0.514933)
	mga (0.480615)
	bfe (0.449573)
	fcc (0.39557)
	aor (0.390549)
	gul (0.355177)
	fat (0.294855)
	spl (0.286369)
	lyg (0.266205)
	sag (0.182715)
	fty (0.17584)
	fco (0.157208)
	tbr (0.154178)
	isp (0.150376)
	liv (0.146284)
	ste (0.135208)
	thg (0.126791)
	bla (0.124347)
	tra (0.123092)
	eru (0.120048)
	spc (0.113366)
	cty (0.10408)