Ss1.1-Pig4-TMW8054I20.3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGATCCCCTTCCGCTCGGAGGCGCCGCCGAAGCTTCGGAGCCAGATTGCGGCTGGGGCT GGGAAGAGCCGGAGCCGTGGCTGACATGGTGCAGCCGTGCCTCTGAGGCCCAGCCCTCCC TGCCTGGAGGTGGGGACCCACCAGGATGAGCAAGCTGTCCGGGGAGCTGGCCTGCGACCT GGAGCGCAGCCTGCCAGCTGTGGCCTCGCTGTCCCACAGCCAGAGCCTCCCCTCCCACTT GCTCCCGCCGCCTCCCGAGAAGCGCCGGGCCATCTCCGACGTCCGCCGCACCTTCTGTCT CTTTGTCACCTTCGACCTGCTCTTCATCTCCCTGCTCTGGATCATCGAGCTGAACACCAA CACAGGCATCCGGAAGAACTTGGAGCAGGAGATCATCTACTACAGCTTTAAAACTTCCTT CTTTGACATCTTTGTCCTGGCCTTCTTCCGCTTCTCCGGACTGCTCCTGGGCTATGCTGT GCTGCGGCTCCGGCACTGGTGGGTGATTGCGGTCACCACACTGGTGTCCAGTGCATTCCT CATTGTCAAGGTCATCCTCTCTGAGCTGCTCAGCAAAGGGGCTTTCGGCTACCTGCTCCC CATCGTCTCCTTTGTCCTCGCCTGGTTGGAGACCTGGTTCCTTGACTTCAAAGTCCTACC CCAGGAGGCCGAGGAGGAGCGATGGTACCTTGCTGCCCAGGCTGCTGTCGCCCGAGGGCC CCTGCTCTTCTCCGGTGCTCTGTCCGAGGGCCAGTTCTATTCACCCCCAGAATCCTTCGC AGGGTCTGACAGTGAATCAGACGAAGAAGTTGTTGGGAAGAAAAGCTTCTCTGCCCAGGA CCGGGAGTACATCCGCCAGGGGAAGGAGGCCATGGCAGTGGTGGACCAGATCTTGGCCCA GGAGGAGAACTGGAAGTTTGAGAAGACTAATGAATATGGGGACACTGTGTACACCATCGA GGTTCCTTTTCATGGCAAGACCTTCATCCTGAAGACCTTCCTGCCGTGCCCTGCGGAGCT GGTGTACCAGGAGGTGATCCTGCAGCCCGAGAGGATGGTGCTGTGGAACAAGACGGTGAC TGCCTGCCAGATCCTGCAGCGAGTAGAAGACAACACCCTCGTCTCCTACGATGTGTCTTC GGGGGCCGCGGGCGGTGTGGTCTCCCCCAGGGACTTCGTGAACGTCCGCCGCATCGAGCG GCGCCGAGACCGATACCTGTCCTCGGGCATCGCCACCACGCACTGCGCCAAGCCCCCGAC GCACAGATACGTCAGGGGAGAGAACGGTCCTGGGGGCTTCATCGTGCTCAAGGCAGCCAG TAACCCCCGCGTCTGCACCTTCGTCTGGATCCTTAATACAGATCTCAAGGGCCGCCTGCC CCGGTACCTCATCCACCAGAGCCTCGCCGCCACCATGTTTGAATTTGCCTTTCACCTGCG GCAGCGCGTCGGAGAGCTGGGCGCCCGGGCGTAAGTGTGCCCCCTCGCCACCCTGCGGGC CAGGGTCCTGTTGCCACAGCTTCCAGAGCCAGAGAGGGCCAGCTGGGCTTCCCGCTGCCC ACAGAGGACCTGGCTGCAAACACTGGGGAGGAAGAAGCTCCCATGGCAGCACCTTGGCTC CGAGCTGCTGCCACCCTCTCCCGCCCTGCGCTGTGCCTGGGAGCCCTGGCTGGCAGCAGG TCGAGGGCTCAGGCGTCTGGACTCCGCTGCTGACGCGAGTGTGGACTATCCTGCTGACGT TTACACGGCGTCCCTGCCATAGTCCTGGAGGAGGAGTTCCACTGTCCCCTACGTGGCCAG GGGCAGGGTCTGGAATGGAAGCCTCAGACACGGTTGGGGAGGGCCAGGACCCTGGGCAGG ACGGGGGTCAGGGAGCCTCATCACCAGTGTGAAGGTGCCAGAGCCCCTCCATCTGTCTGC TCTCATCAGTGGTTTTTTAGGATTATTTAAAGGGTCTGGGACCTTTTTCCACTTGGACGT GTCGGGGTACAGGTGGCAGGTGGGAGAAGTGGGTGCTGGCAGGGGACCTGTTCTCCCAGG TTCTCTCCAGGTCACCTCCCCCGCCCAGGGCCTCCCTGGGGACCTTTGTCATTTGAGCCA ATTAAAAATACG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGATCCCCTTCCGCTCGGAGGCGCCGCCGAAGCTTCGGAGCCAGATTGCGGCTGGGGCT GGGAAGAGCCGGAGCCGTGGCTGACATGGTGCAGCCGTGCCTCTGAGGCCCAGCCCTCCC TGCCTGGAGGTGGGGACCCACCAGGATGAGCAAGCTGTCCGGGGAGCTGGCCTGCGACCT GGAGCGCAGCCTGCCAGCTGTGGCCTCGCTGTCCCACAGCCAGAGCCTCCCCTCCCACTT GCTCCCGCCGCCTCCCGAGAAGCGCCGGGCCATCTCCGACGTCCGCCGCACCTTCTGTCT CTTTGTCACCTTCGACCTGCTCTTCATCTCCCTGCTCTGGATCATCGAGCTGAACACCAA CACAGGCATCCGGAAGAACTTGGAGCAGGAGATCATCTACTACAGCTTTAAAACTTCCTT CTTTGACATCTTTGTCCTGGCCTTCTTCCGCTTCTCCGGACTGCTCCTGGGCTATGCTGT GCTGCGGCTCCGGCACTGGTGGGTGATTGCGGTCACCACACTGGTGTCCAGTGCATTCCT CATTGTCAAGGTCATCCTCTCTGAGCTGCTCAGCAAAGGGGCTTTCGGCTACCTGCTCCC CATCGTCTCCTTTGTCCTCGCCTGGTTGGAGACCTGGTTCCTTGACTTCAAAGTCCTACC CCAGGAGGCCGAGGAGGAGCGATGGTACCTTGCTGCCCAGGCTGCTGTCGCCCGAGGGCC CCTGCTCTTCTCCGGTGCTCTGTCCGAGGGCCAGTTCTATTCACCCCCAGAATCCTTCGC AGGGTCTGACAGTGAATCAGACGAAGAAGTTGTTGGGAAGAAAAGCTTCTCTGCCCAGGA CCGGGAGTACATCCGCCAGGGGAAGGAGGCCATGGCAGTGGTGGACCAGATCTTGGCCCA GGAGGAGAACTGGAAGTTTGAGAAGACTAATGAATATGGGGACACTGTGTACACCATCGA GGTTCCTTTTCATGGCAAGACCTTCATCCTGAAGACCTTCCTGCCGTGCCCTGCGGAGCT GGTGTACCAGGAGGTGATCCTGCAGCCCGAGAGGATGGTGCTGTGGAACAAGACGGTGAC TGCCTGCCAGATCCTGCAGCGAGTAGAAGACAACACCCTCGTCTCCTACGATGTGTCTTC GGGGGCCGCGGGCGGTGTGGTCTCCCCCAGGGACTTCGTGAACGTCCGCCGCATCGAGCG GCGCCGAGACCGATACCTGTCCTCGGGCATCGCCACCACGCACTGCGCCAAGCCCCCGAC GCACAGATACGTCAGGGGAGAGAACGGTCCTGGGGGCTTCATCGTGCTCAAGGCAGCCAG TAACCCCCGCGTCTGCACCTTCGTCTGGATCCTTAATACAGATCTCAAGGGCCGCCTGCC CCGGTACCTCATCCACCAGAGCCTCGCCGCCACCATGTTTGAATTTGCCTTTCACCTGCG GCAGCGCGTCGGAGAGCTGGGCGCCCGGGCGTAAGTGTGCCCCCTCGCCACCCTGCGGGC CAGGGTCCTGTTGCCACAGCTTCCAGAGCCAGAGAGGGCCAGCTGGGCTTCCCGCTGCCC ACAGAGGACCTGGCTGCAAACACTGGGGAGGAAGAAGCTCCCATGGCAGCACCTTGGCTC CGAGCTGCTGCCACCCTCTCCCGCCCTGCGCTGTGCCTGGGAGCCCTGGCTGGCAGCAGG TCGAGGGCTCAGGCGTCTGGACTCCGCTGCTGACGCGAGTGTGGACTATCCTGCTGACGT TTACACGGCGTCCCTGCCATAGTCCTGGAGGAGGAGTTCCACTGTCCCCTACGTGGCCAG GGGCAGGGTCTGGAATGGAAGCCTCAGACACGGTTGGGGAGGGCCAGGACCCTGGGCAGG ACGGGGGTCAGGGAGCCTCATCACCAGTGTGAAGGTGCCAGAGCCCCTCCATCTGTCTGC TCTCATCAGTGGTTTTTTAGGATTATTTAAAGGGTCTGGGACCTTTTTCCACTTGGACGT GTCGGGGTACAGGTGGCAGGTGGGAGAAGTGGGTGCTGGCAGGGGACCTGTTCTCCCAGG TTCTCTCCAGGTCACCTCCCCCGCCCAGGGCCTCCCTGGGGACCTTTGTCATTTGAGCCA ATTAAAAATACG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 828-1683, + strand, RNAz p=0.989562 | |
| 828-930, + strand, RNAz p=0.903456 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 828-1683, + strand, RNAz p=0.989562 | |
| 828-930, + strand, RNAz p=0.903456 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 90-355, gnl|bosTau2|chr19 (32298095-32298378) | |
| 90-355, gnl|Hg17|chr17 (35063255-35063529) | |
| 90-355, gnl|Mm7|chr11 (98481104-98481381) | |
| 555-684, gnl|bosTau2|chr19 (32304885-32305015) | |
| 555-684, gnl|Hg17|chr17 (35068173-35068302) | |
| 555-684, gnl|Mm7|chr11 (98485515-98485647) | |
| 828-930, gnl|bosTau2|chr19 (32305958-32306060) | |
| 828-930, gnl|canFam2|chr9 (26146493-26146374) | |
| 828-930, gnl|danRer3|chr19 (766345-766447) | |
| 828-930, gnl|fr1|chrUn (17840040-17839929) | |
| 828-930, gnl|galGal2|chrUn (163759159-163759047) | |
| 828-930, gnl|hg17|chr17 (35069219-35069338) | |
| 828-930, gnl|Hg17|chr17 (35069229-35069331) | |
| 828-930, gnl|mm7|chr11 (98486473-98486587) | |
| 828-930, gnl|Mm7|chr11 (98486482-98486580) | |
| 828-930, gnl|monDom2|scaffold_18 (48624868-48624969) | |
| 828-930, gnl|panTro1|chr19 (38305852-38305971) | |
| 828-930, gnl|rheMac2|chr16 (49755037-49755156) | |
| 828-930, gnl|tetNig1|chr3 (12949535-12949651) | |
| 828-930, gnl|xenTro1|scaffold_830 (106979-107079) | |
| 1164-1293, gnl|bosTau2|chr19 (32307587-32307718) | |
| 1164-1293, gnl|canFam2|chr9 (26144967-26144771) | |
| 1164-1293, gnl|danRer3|chr19 (768551-768753) | |
| 1164-1293, gnl|fr1|chrUn (17838574-17838384) | |
| 1164-1293, gnl|galGal2|chrUn (163755949-163755743) | |
| 1164-1293, gnl|hg17|chr17 (35070676-35070870) | |
| 1164-1293, gnl|Hg17|chr17 (35070752-35070884) | |
| 1164-1293, gnl|mm7|chr11 (98487864-98488043) | |
| 1164-1293, gnl|Mm7|chr11 (98487926-98488056) | |
| 1164-1293, gnl|monDom2|scaffold_18 (48626710-48627013) | |
| 1164-1293, gnl|oryCun1|scaffold_203832 (9470-9675) | |
| 1164-1293, gnl|panTro1|chr19 (38307306-38307500) | |
| 1164-1293, gnl|rheMac2|chr16 (49756511-49756705) | |
| 1164-1293, gnl|tetNig1|chr3 (12950997-12951165) | |
| 1164-1293, gnl|xenTro1|scaffold_830 (108732-108937) | |
| 1368-1862, gnl|bosTau2|chr19 (32309220-32309700) | |
| 1368-1862, gnl|Hg17|chr17 (35072581-35073015) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 90-355, gnl|bosTau2|chr19 (32298095-32298378) | |
| 90-355, gnl|Hg17|chr17 (35063255-35063529) | |
| 90-355, gnl|Mm7|chr11 (98481104-98481381) | |
| 555-684, gnl|bosTau2|chr19 (32304885-32305015) | |
| 555-684, gnl|Hg17|chr17 (35068173-35068302) | |
| 555-684, gnl|Mm7|chr11 (98485515-98485647) | |
| 828-930, gnl|bosTau2|chr19 (32305958-32306060) | |
| 828-930, gnl|canFam2|chr9 (26146493-26146374) | |
| 828-930, gnl|danRer3|chr19 (766345-766447) | |
| 828-930, gnl|fr1|chrUn (17840040-17839929) | |
| 828-930, gnl|galGal2|chrUn (163759159-163759047) | |
| 828-930, gnl|hg17|chr17 (35069219-35069338) | |
| 828-930, gnl|Hg17|chr17 (35069229-35069331) | |
| 828-930, gnl|mm7|chr11 (98486473-98486587) | |
| 828-930, gnl|Mm7|chr11 (98486482-98486580) | |
| 828-930, gnl|monDom2|scaffold_18 (48624868-48624969) | |
| 828-930, gnl|panTro1|chr19 (38305852-38305971) | |
| 828-930, gnl|rheMac2|chr16 (49755037-49755156) | |
| 828-930, gnl|tetNig1|chr3 (12949535-12949651) | |
| 828-930, gnl|xenTro1|scaffold_830 (106979-107079) | |
| 1164-1293, gnl|bosTau2|chr19 (32307587-32307718) | |
| 1164-1293, gnl|canFam2|chr9 (26144967-26144771) | |
| 1164-1293, gnl|danRer3|chr19 (768551-768753) | |
| 1164-1293, gnl|fr1|chrUn (17838574-17838384) | |
| 1164-1293, gnl|galGal2|chrUn (163755949-163755743) | |
| 1164-1293, gnl|hg17|chr17 (35070676-35070870) | |
| 1164-1293, gnl|Hg17|chr17 (35070752-35070884) | |
| 1164-1293, gnl|mm7|chr11 (98487864-98488043) | |
| 1164-1293, gnl|Mm7|chr11 (98487926-98488056) | |
| 1164-1293, gnl|monDom2|scaffold_18 (48626710-48627013) | |
| 1164-1293, gnl|oryCun1|scaffold_203832 (9470-9675) | |
| 1164-1293, gnl|panTro1|chr19 (38307306-38307500) | |
| 1164-1293, gnl|rheMac2|chr16 (49756511-49756705) | |
| 1164-1293, gnl|tetNig1|chr3 (12950997-12951165) | |
| 1164-1293, gnl|xenTro1|scaffold_830 (108732-108937) | |
| 1368-1862, gnl|bosTau2|chr19 (32309220-32309700) | |
| 1368-1862, gnl|Hg17|chr17 (35072581-35073015) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| nje (0.16592) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| ute (0.132784) | |
| eru (0.120048) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.16592) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| ute (0.132784) | |
| eru (0.120048) |