Non-Coding RNA Search

Ss1.1-Pig4-TMW8054J02.3

Sequence:


               
               GCCCGTGGGTGTTACAGGGATTTCAATCTTGGGCTTCTTCACGCCATTGCCGCTGGGCTG
CTCTTCCGAGAGCTGCCGCTTTCGGGGCTTGTTCTCAGCCGGGGGGGTTTCCACCAAGCT
TGAGTCTTGGGGCAGGGGGGTCGCATTCAGCCCCAAAGGGTCCGAAATTACGTCATGCTG
GCCCAGTACGGGCATTTCCCACAGGGACTGGTTGGTAGAAGCTCTGACGTAGTAGGGACG
ACATCATTACAATCACTGGGTCGTTCATTTTATTGTACACTCATTCACTCATTCAGAGAT
GCCTTGGTCAATTTGGAAGGGGAAAAAATGAATGGTTACTTTGCACAGTTTGGCGGATAA
AAGTACAGGGAGCAAGAAAACTTACATACAACAAAAGGGGGCCAGGATAACGAAAAGGTT
TGGAACCACTGACCAAGGGAGCTGCCTTGGTTCTCTGGGGAGGAGGAATTCCTGATGCCT
TGGGGCTGGGCCCACCGGTCTCAAGGCTGAACGAGGTCTCACTTTCTCTCACCCTCTGGG
GTCTGCAATGCTAGCATGAGAGGATTTTCTTCTCCAGCCGGATGGACCCCCACGTCACAG
GGTCCCACAGAGGCAGTGGGAAGGCCTGCAGGAAAGCTCAGCGCAGGCGGGTGGGCTGGT
CAGCAGTGGAGTGGACGGGGGCCCAGGGGATTTCTTGCATCAGCAACTGCCCGTAGCGGA
CTCGAGGGGACGCGGTTACACGTTCTGCTCGACCGCCCGTTTTGCCGCCTCCGCCTCGCC
CTCCCCAGCGCCGCTGCCGCCATCTTGTGTCCCGGGCCGGGACTCCGCGCTGCGCATGCG
CTGGTACCGCCTCTGAGGGACCTCGCCGCTGCCGCTCCGCCATCTTGAGTGTGGCAGGAC
CGGCCAGCTCCTTGGACCCTGCTCGCTTTGGGCCCCCCTCCCCTTCCTTCCGTTCTTCCC
TGCTGTTTCATGCAGGTCTAGGGTGGAGGAGGGCAGCTTCGCGGGCCCTGAGGCGTGGAC
TGAGGAAGGAACGCACTCACAAGCACGCTCCTTGCCTCAGTTTCCCCCGCGAGCACACCC
ACTGGTGCTAGCGGACCTGGGTGGGCGGTGCGCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCGTGGGTGTTACAGGGATTTCAATCTTGGGCTTCTTCACGCCATTGCCGCTGGGCTG
CTCTTCCGAGAGCTGCCGCTTTCGGGGCTTGTTCTCAGCCGGGGGGGTTTCCACCAAGCT
TGAGTCTTGGGGCAGGGGGGTCGCATTCAGCCCCAAAGGGTCCGAAATTACGTCATGCTG
GCCCAGTACGGGCATTTCCCACAGGGACTGGTTGGTAGAAGCTCTGACGTAGTAGGGACG
ACATCATTACAATCACTGGGTCGTTCATTTTATTGTACACTCATTCACTCATTCAGAGAT
GCCTTGGTCAATTTGGAAGGGGAAAAAATGAATGGTTACTTTGCACAGTTTGGCGGATAA
AAGTACAGGGAGCAAGAAAACTTACATACAACAAAAGGGGGCCAGGATAACGAAAAGGTT
TGGAACCACTGACCAAGGGAGCTGCCTTGGTTCTCTGGGGAGGAGGAATTCCTGATGCCT
TGGGGCTGGGCCCACCGGTCTCAAGGCTGAACGAGGTCTCACTTTCTCTCACCCTCTGGG
GTCTGCAATGCTAGCATGAGAGGATTTTCTTCTCCAGCCGGATGGACCCCCACGTCACAG
GGTCCCACAGAGGCAGTGGGAAGGCCTGCAGGAAAGCTCAGCGCAGGCGGGTGGGCTGGT
CAGCAGTGGAGTGGACGGGGGCCCAGGGGATTTCTTGCATCAGCAACTGCCCGTAGCGGA
CTCGAGGGGACGCGGTTACACGTTCTGCTCGACCGCCCGTTTTGCCGCCTCCGCCTCGCC
CTCCCCAGCGCCGCTGCCGCCATCTTGTGTCCCGGGCCGGGACTCCGCGCTGCGCATGCG
CTGGTACCGCCTCTGAGGGACCTCGCCGCTGCCGCTCCGCCATCTTGAGTGTGGCAGGAC
CGGCCAGCTCCTTGGACCCTGCTCGCTTTGGGCCCCCCTCCCCTTCCTTCCGTTCTTCCC
TGCTGTTTCATGCAGGTCTAGGGTGGAGGAGGGCAGCTTCGCGGGCCCTGAGGCGTGGAC
TGAGGAAGGAACGCACTCACAAGCACGCTCCTTGCCTCAGTTTCCCCCGCGAGCACACCC
ACTGGTGCTAGCGGACCTGGGTGGGCGGTGCGCTGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8N1K1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8N1K1_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               414-519, + strand, RNAz p=0.723182

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               414-519, + strand, RNAz p=0.723182

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               28-165, gnl|bosTau2|chr13 (54530845-54530708)
               

               
               28-165, gnl|Hg17|chr20 (44002658-44002521)
               

               
               28-165, gnl|Mm7|chr2 (164626150-164626013)
               


               
               217-710, gnl|bosTau2|chr13 (54528288-54527808)
               

               
               217-710, gnl|Hg17|chr20 (43999955-43999460)
               

               
               217-710, gnl|Mm7|chr2 (164623851-164623425)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               28-165, gnl|bosTau2|chr13 (54530845-54530708)
               

               
               28-165, gnl|Hg17|chr20 (44002658-44002521)
               

               
               28-165, gnl|Mm7|chr2 (164626150-164626013)
               


               
               217-710, gnl|bosTau2|chr13 (54528288-54527808)
               

               
               217-710, gnl|Hg17|chr20 (43999955-43999460)
               

               
               217-710, gnl|Mm7|chr2 (164623851-164623425)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               elu (0.385356)
               

               
               cly (0.120642)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               cly (0.120642)
               

               
               cty (0.10408)

	28-165, gnl\|bosTau2\|chr13 (54530845-54530708)
	28-165, gnl\|Hg17\|chr20 (44002658-44002521)
	28-165, gnl\|Mm7\|chr2 (164626150-164626013)

	217-710, gnl\|bosTau2\|chr13 (54528288-54527808)
	217-710, gnl\|Hg17\|chr20 (43999955-43999460)
	217-710, gnl\|Mm7\|chr2 (164623851-164623425)