Ss1.1-Pig4-TMW8054J09.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGAAGACGCAGGAGGCGATGCCGCTGATGTCCTCCTTGCGGATGCAGGAGTAGTGCACC TGGGGCCGCAGGCCGGGCACAGAGAACACGTGCACGTCGCCCAGGTTGGTCAGGCAGGCC AGGCAGGTCTCCGCGTAGTCCTCGCAGGCGGCGCTGGCGAACGTGACCAAGGCCACCTTG CGTACGCGGCAGCCCTCGTGGGCCGTCAGCTTGAACTTGGTCTTGGCGCTCACCTTGGGC AGCGTGAACACCTTGAACTGTTCCTCGGATGCGATGAGCACGGCGTGGCCGCCCTGCATG TCGGGCGCCTGTGCCAGGTCCCGCGAGGCCTCATAGGGCTCCGGCAGCGGGCGGCCGCGT CCGTCCAGCACGGCAATGGCCACCACGGGGGCCCGGTGCATCAGCTGCACTTCCTTGCCC AGCACGGCCTCCACTGCCCGCTCGGGCCGCTTCTCGGTGCCCGCTGCTGCCGTCGGCACC TCCAGCGCGTAGGCGAACACGGAGCCCGAGTTGGTGCCCGCCCACATGGTGGGGCCATGG TGGGCCGCGTCTCGGAGGAAGGTGTCGGCGAAGTACAGGCAGCGCACGACGCCCGAGAGG GAGTCGTCGGCCGAGCGGGGCTCGATACGGCGCTGCACGGGCGTCACCTCCACGTCGTGG GGGCCGGCCTGCTCCGCCAGCTGTGCGTTGGCCTCCTGCAACTTGCTGCCCGCGGCAACG GCGCGCTTCTTGCCCGAGACCCGGCTCTTGCGGATGCGCCGGAAGGACTGGCGCAGCGAC TTCTTGAGCGACTTCACCCGGGACAGCGGCCCCTCCATGGCCAGAGAGTCACTGGGGTGC AGGGTGCACCTGGCCAGCACGGGGCTCAAGCGCCGGTAGTCGAACAGGCCAAAGCCGTGA CTGGTGCCGAAGGCCACCAGGCCCCACTCGGCGTGGAGCGTGACGGCCGTGACGGCGGCC GGCGGCAGGCACTGCACCAGCACGCGGGGCTGGAAGCCGGCCGGCCAGGGCAGCGGCCCC GCCCGGGGGATCAGCCGCTCGTGGCCCTTCCACGTGAAGCCCTCGCGGTCCTGGAGGAGG TCCACACTGGCCACACCGACCACCTGCTCCGATGGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGAAGACGCAGGAGGCGATGCCGCTGATGTCCTCCTTGCGGATGCAGGAGTAGTGCACC TGGGGCCGCAGGCCGGGCACAGAGAACACGTGCACGTCGCCCAGGTTGGTCAGGCAGGCC AGGCAGGTCTCCGCGTAGTCCTCGCAGGCGGCGCTGGCGAACGTGACCAAGGCCACCTTG CGTACGCGGCAGCCCTCGTGGGCCGTCAGCTTGAACTTGGTCTTGGCGCTCACCTTGGGC AGCGTGAACACCTTGAACTGTTCCTCGGATGCGATGAGCACGGCGTGGCCGCCCTGCATG TCGGGCGCCTGTGCCAGGTCCCGCGAGGCCTCATAGGGCTCCGGCAGCGGGCGGCCGCGT CCGTCCAGCACGGCAATGGCCACCACGGGGGCCCGGTGCATCAGCTGCACTTCCTTGCCC AGCACGGCCTCCACTGCCCGCTCGGGCCGCTTCTCGGTGCCCGCTGCTGCCGTCGGCACC TCCAGCGCGTAGGCGAACACGGAGCCCGAGTTGGTGCCCGCCCACATGGTGGGGCCATGG TGGGCCGCGTCTCGGAGGAAGGTGTCGGCGAAGTACAGGCAGCGCACGACGCCCGAGAGG GAGTCGTCGGCCGAGCGGGGCTCGATACGGCGCTGCACGGGCGTCACCTCCACGTCGTGG GGGCCGGCCTGCTCCGCCAGCTGTGCGTTGGCCTCCTGCAACTTGCTGCCCGCGGCAACG GCGCGCTTCTTGCCCGAGACCCGGCTCTTGCGGATGCGCCGGAAGGACTGGCGCAGCGAC TTCTTGAGCGACTTCACCCGGGACAGCGGCCCCTCCATGGCCAGAGAGTCACTGGGGTGC AGGGTGCACCTGGCCAGCACGGGGCTCAAGCGCCGGTAGTCGAACAGGCCAAAGCCGTGA CTGGTGCCGAAGGCCACCAGGCCCCACTCGGCGTGGAGCGTGACGGCCGTGACGGCGGCC GGCGGCAGGCACTGCACCAGCACGCGGGGCTGGAAGCCGGCCGGCCAGGGCAGCGGCCCC GCCCGGGGGATCAGCCGCTCGTGGCCCTTCCACGTGAAGCCCTCGCGGTCCTGGAGGAGG TCCACACTGGCCACACCGACCACCTGCTCCGATGGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 329-448, - strand, RNAz p=0.507273 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 329-448, - strand, RNAz p=0.507273 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 249-562, gnl|bosTau2|chr19 (26612141-26611828) | |
| 249-562, gnl|Hg17|chr17 (18084915-18084603) | |
| 249-562, gnl|Mm7|chr11 (60793192-60792885) | |
| 699-853, gnl|bosTau2|chr19 (26610274-26610123) | |
| 699-853, gnl|canFam2|chr5 (44320466-44320279) | |
| 699-853, gnl|danRer3|chr3 (37887077-37887243) | |
| 699-853, gnl|echTel1|scaffold_311490 (13262-13071) | |
| 699-853, gnl|fr1|chrUn (188316099-188316278) | |
| 699-853, gnl|galGal2|chrUn (156971414-156971247) | |
| 699-853, gnl|hg17|chr17 (18082084-18082274) | |
| 699-853, gnl|Hg17|chr17 (18082256-18082102) | |
| 699-853, gnl|loxAfr1|scaffold_74379 (6928-7120) | |
| 699-853, gnl|mm7|chr11 (60791519-60791703) | |
| 699-853, gnl|Mm7|chr11 (60791689-60791535) | |
| 699-853, gnl|monDom2|scaffold_55 (12159860-12159660) | |
| 699-853, gnl|oryCun1|scaffold_111578 (3722-3908) | |
| 699-853, gnl|panTro1|chr19 (18489469-18489659) | |
| 699-853, gnl|rheMac2|chr16 (18163317-18163507) | |
| 699-853, gnl|rn3|chr10 (46869473-46869654) | |
| 699-853, gnl|tetNig1|chrUn_random (39299117-39298939) | |
| 699-853, gnl|xenTro1|scaffold_142 (1129210-1129039) | |
| 872-1111, gnl|bosTau2|chr19 (51527055-51527294) | |
| 872-1111, gnl|canFam2|chr5 (44321073-44320841) | |
| 872-1111, gnl|danRer3|chr3 (37885190-37885411) | |
| 872-1111, gnl|echTel1|scaffold_314809 (5453-5226) | |
| 872-1111, gnl|fr1|chrUn (188315688-188315909) | |
| 872-1111, gnl|galGal2|chrUn (156971784-156971562) | |
| 872-1111, gnl|hg17|chr17 (18081501-18081733) | |
| 872-1111, gnl|Hg17|chr17 (71077909-71077670) | |
| 872-1111, gnl|loxAfr1|scaffold_74379 (6330-6560) | |
| 872-1111, gnl|mm7|chr11 (60790974-60791206) | |
| 872-1111, gnl|Mm7|chr11 (115959942-115959703) | |
| 872-1111, gnl|monDom2|scaffold_55 (12162387-12162158) | |
| 872-1111, gnl|panTro1|chr19 (18488886-18489118) | |
| 872-1111, gnl|rheMac2|chr16 (18162732-18162964) | |
| 872-1111, gnl|rn3|chr10 (46868959-46869193) | |
| 872-1111, gnl|tetNig1|chrUn_random (39299488-39299267) | |
| 872-1111, gnl|xenTro1|scaffold_142 (1130689-1130467) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 249-562, gnl|bosTau2|chr19 (26612141-26611828) | |
| 249-562, gnl|Hg17|chr17 (18084915-18084603) | |
| 249-562, gnl|Mm7|chr11 (60793192-60792885) | |
| 699-853, gnl|bosTau2|chr19 (26610274-26610123) | |
| 699-853, gnl|canFam2|chr5 (44320466-44320279) | |
| 699-853, gnl|danRer3|chr3 (37887077-37887243) | |
| 699-853, gnl|echTel1|scaffold_311490 (13262-13071) | |
| 699-853, gnl|fr1|chrUn (188316099-188316278) | |
| 699-853, gnl|galGal2|chrUn (156971414-156971247) | |
| 699-853, gnl|hg17|chr17 (18082084-18082274) | |
| 699-853, gnl|Hg17|chr17 (18082256-18082102) | |
| 699-853, gnl|loxAfr1|scaffold_74379 (6928-7120) | |
| 699-853, gnl|mm7|chr11 (60791519-60791703) | |
| 699-853, gnl|Mm7|chr11 (60791689-60791535) | |
| 699-853, gnl|monDom2|scaffold_55 (12159860-12159660) | |
| 699-853, gnl|oryCun1|scaffold_111578 (3722-3908) | |
| 699-853, gnl|panTro1|chr19 (18489469-18489659) | |
| 699-853, gnl|rheMac2|chr16 (18163317-18163507) | |
| 699-853, gnl|rn3|chr10 (46869473-46869654) | |
| 699-853, gnl|tetNig1|chrUn_random (39299117-39298939) | |
| 699-853, gnl|xenTro1|scaffold_142 (1129210-1129039) | |
| 872-1111, gnl|bosTau2|chr19 (51527055-51527294) | |
| 872-1111, gnl|canFam2|chr5 (44321073-44320841) | |
| 872-1111, gnl|danRer3|chr3 (37885190-37885411) | |
| 872-1111, gnl|echTel1|scaffold_314809 (5453-5226) | |
| 872-1111, gnl|fr1|chrUn (188315688-188315909) | |
| 872-1111, gnl|galGal2|chrUn (156971784-156971562) | |
| 872-1111, gnl|hg17|chr17 (18081501-18081733) | |
| 872-1111, gnl|Hg17|chr17 (71077909-71077670) | |
| 872-1111, gnl|loxAfr1|scaffold_74379 (6330-6560) | |
| 872-1111, gnl|mm7|chr11 (60790974-60791206) | |
| 872-1111, gnl|Mm7|chr11 (115959942-115959703) | |
| 872-1111, gnl|monDom2|scaffold_55 (12162387-12162158) | |
| 872-1111, gnl|panTro1|chr19 (18488886-18489118) | |
| 872-1111, gnl|rheMac2|chr16 (18162732-18162964) | |
| 872-1111, gnl|rn3|chr10 (46868959-46869193) | |
| 872-1111, gnl|tetNig1|chrUn_random (39299488-39299267) | |
| 872-1111, gnl|xenTro1|scaffold_142 (1130689-1130467) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eru (0.120048) |