Non-Coding RNA Search

Ss1.1-Pig4-TMW8054J11.3

Sequence:


               
               GTTCATCTTAACCTTATCTTCTAAGGATGACTTGAGATCTGCTCACAGGCAATGTTGACA
TGAACAGGGCATTTATTTTTAAATCTTCTTCAAGTATCAGGAATTTTACCAGGAGCTATT
GATTTGTCAAGACACGTATTTTGGTGCTCATGTCATTGTTGTTGCATTTTTGAGGTGCTT
TTTTTCTTCATGGATTTAAGGCTTGATTAGTTGATGATAAATTGTTTCCAGGTGACTGCC
AACTTGTGCTGTTTTTATCTTTCAAGAGTTTATTTTGCCTTGATTAGGAAAAAAAAGAAA
TCTGACTTAGAAAACATATATAAAATATATACATGTTAGTATTTTTCTTAAATTGAATCT
ATTTAGATCCGAGAATTTAGCCTCAGCTTCTGATTAGGTCAGACTTACTCTTTATAAGAA
ATATGGTCTGTGTAATATCCCCATCACATTAATAATCAATATTTCAGAAATAAAAAGTTG
TAATTTACACAGGATCACATCTGGGAAGGAGAGCTGGGAGACTGGGAGACTTGCTTTTTT
ATTTTATATCCTTCTGTATGGTTTTAATGTTTGACCAGGTGATTGTTTTATTCTTTAAAA
AGAAAAAATGTTTGTTTGCATGTTATCCTTGGTCTCTGTGAAAGTTAATAAATGCATTGT
CCGTAGTTAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCATCTTAACCTTATCTTCTAAGGATGACTTGAGATCTGCTCACAGGCAATGTTGACA
TGAACAGGGCATTTATTTTTAAATCTTCTTCAAGTATCAGGAATTTTACCAGGAGCTATT
GATTTGTCAAGACACGTATTTTGGTGCTCATGTCATTGTTGTTGCATTTTTGAGGTGCTT
TTTTTCTTCATGGATTTAAGGCTTGATTAGTTGATGATAAATTGTTTCCAGGTGACTGCC
AACTTGTGCTGTTTTTATCTTTCAAGAGTTTATTTTGCCTTGATTAGGAAAAAAAAGAAA
TCTGACTTAGAAAACATATATAAAATATATACATGTTAGTATTTTTCTTAAATTGAATCT
ATTTAGATCCGAGAATTTAGCCTCAGCTTCTGATTAGGTCAGACTTACTCTTTATAAGAA
ATATGGTCTGTGTAATATCCCCATCACATTAATAATCAATATTTCAGAAATAAAAAGTTG
TAATTTACACAGGATCACATCTGGGAAGGAGAGCTGGGAGACTGGGAGACTTGCTTTTTT
ATTTTATATCCTTCTGTATGGTTTTAATGTTTGACCAGGTGATTGTTTTATTCTTTAAAA
AGAAAAAATGTTTGTTTGCATGTTATCCTTGGTCTCTGTGAAAGTTAATAAATGCATTGT
CCGTAGTTAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-369, gnl|bosTau2|chr25 (23794950-23795320)
               

               
               1-369, gnl|Hg17|chr7 (65062850-65064025)
               


               
               401-671, gnl|bosTau2|chr25 (23795409-23795684)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-369, gnl|bosTau2|chr25 (23794950-23795320)
               

               
               1-369, gnl|Hg17|chr7 (65062850-65064025)
               


               
               401-671, gnl|bosTau2|chr25 (23795409-23795684)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               amn (0.417711)
               

               
               aor (0.195274)
               

               
               mgm (0.180343)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               ste (0.135208)
               

               
               tra (0.123092)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               aor (0.195274)
               

               
               mgm (0.180343)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               ste (0.135208)
               

               
               tra (0.123092)

	1-369, gnl\|bosTau2\|chr25 (23794950-23795320)
	1-369, gnl\|Hg17\|chr7 (65062850-65064025)

	401-671, gnl\|bosTau2\|chr25 (23795409-23795684)

	amn (0.417711)
	aor (0.195274)
	mgm (0.180343)
	isp (0.150376)
	lin (0.145603)
	ste (0.135208)
	tra (0.123092)