Non-Coding RNA Search

Ss1.1-Pig4-TMW8054J16.3

Sequence:


               
               GAAGCCTGACAGTTTCTGCGGGTTGGGACAGCGCCCGGGGCCAGCGGGCTGGATCCTGGC
TGCGGCGGGGTCCGGATGGAGGCGGCCGGGAAGCGGAGCAGGGACGAGCGGGGGCGAGCG
GCGAGTGTGCCGGACGGCCACGCAGAGAAGAGTCTGCTGGATAGGAAAGTCTACATGGAC
TATAACGCCACCACCCCCCTGGAGCCAGAAGTGATCCAGGCCATGGCCGAGGCCATGCAG
GAAGCCTGGGGGAATCCCAGCAGTGCCTACCCGGAAGGCAGGAAGGCCAAGGAGACGATC
GGCGCCGCCCGGGAGAGCCTGGCCAGGATGGTAGGCGGGAGACCTCAGGACGTGATCTTC
ACTTCCGGGGGCACCGAGGTAAACGGCCCGCACGGCCTCTCATCCTTAGCTGCACCCACG
GTAAAAAGCGACAGCGGCTCCCTCCTGGTATCATGATGTTGTAAAGAAAGAGTAACGCTA
TGTCTTGGTCGTGTGCGGGTTGGCTTGATGTAACAAGCCAGCGCTTATCCCGTAAGTGAC
TTCCAGGGCTCTGATAGATGTTGTTTGCTGTCTCTCGTATAAAGTAACTTGCTTCGCGTT
GCTCTTCCAATAAAGAGAGTTTCCCCTTCATTTCGCCCTAGAATCTCATTCCTTTGAATC
CCAAAGTTGTTGACCTTATGAGGGGTGTGAGATTTCCAGTCTGAAAGGCCATCATCAAAA
AGTCTACCGATAACAAATGCTGGAGGGGGTGTGGAGAAAAGGGACCCTCCTGCACTGCGG
GTGGGAATGTAAACGGGGCCGCCACCGTGGAGAACAGTATGGAGGTTTCTTAAAAAACCA
GACCCATTGGAGTTCCCGTGGTGGCTCAGTGGTTAATGAATCCGATAGTAACCATGAGGT
TGCGGGTTTGACCCCTGGCCTTGCTCGGTGGGAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGCCTGACAGTTTCTGCGGGTTGGGACAGCGCCCGGGGCCAGCGGGCTGGATCCTGGC
TGCGGCGGGGTCCGGATGGAGGCGGCCGGGAAGCGGAGCAGGGACGAGCGGGGGCGAGCG
GCGAGTGTGCCGGACGGCCACGCAGAGAAGAGTCTGCTGGATAGGAAAGTCTACATGGAC
TATAACGCCACCACCCCCCTGGAGCCAGAAGTGATCCAGGCCATGGCCGAGGCCATGCAG
GAAGCCTGGGGGAATCCCAGCAGTGCCTACCCGGAAGGCAGGAAGGCCAAGGAGACGATC
GGCGCCGCCCGGGAGAGCCTGGCCAGGATGGTAGGCGGGAGACCTCAGGACGTGATCTTC
ACTTCCGGGGGCACCGAGGTAAACGGCCCGCACGGCCTCTCATCCTTAGCTGCACCCACG
GTAAAAAGCGACAGCGGCTCCCTCCTGGTATCATGATGTTGTAAAGAAAGAGTAACGCTA
TGTCTTGGTCGTGTGCGGGTTGGCTTGATGTAACAAGCCAGCGCTTATCCCGTAAGTGAC
TTCCAGGGCTCTGATAGATGTTGTTTGCTGTCTCTCGTATAAAGTAACTTGCTTCGCGTT
GCTCTTCCAATAAAGAGAGTTTCCCCTTCATTTCGCCCTAGAATCTCATTCCTTTGAATC
CCAAAGTTGTTGACCTTATGAGGGGTGTGAGATTTCCAGTCTGAAAGGCCATCATCAAAA
AGTCTACCGATAACAAATGCTGGAGGGGGTGTGGAGAAAAGGGACCCTCCTGCACTGCGG
GTGGGAATGTAAACGGGGCCGCCACCGTGGAGAACAGTATGGAGGTTTCTTAAAAAACCA
GACCCATTGGAGTTCCCGTGGTGGCTCAGTGGTTAATGAATCCGATAGTAACCATGAGGT
TGCGGGTTTGACCCCTGGCCTTGCTCGGTGGGAGCA

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               696-838, gnl|bosTau2|chr17 (29471933-29472077)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               696-838, gnl|bosTau2|chr17 (29471933-29472077)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               ill (0.175593)
               

               
               cje (0.165235)
               

               
               spl (0.143184)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               cje (0.165235)
               

               
               spl (0.143184)