Ss1.1-Pig4-TMW8054J18.3
|
TTTCATTCTAAAATAAAGATAACATTTATTATCACAATTGCATAAAAACACAGACAGCTT
TTACAAAAATGATTTTTGATAGAAAAATAGTTGTTTGAATACATGTGATTTTTGTAGGAA
CACCACACTATTGCTGTACTTCCAGCTAAAGCTTCAAAGAAACTAAATTTCTTATAATCA
AAATAATCCAGCATTTACCACAACCCATCTTTGGAAAGAAGTTCATAGTGTTTTCTGAAC
AAATCAAAGCATTACTCACTAAGTTATACTCCCGTGCCTGACAGTCCCTGTGTGTGTGTG
TCGCACATAGTCACACACTGATGACAGACTGGGAGCGCTGGAAGGGGGCTCGGAGCCCGT
TCTTCTGCCCCTCACTTTTCAGAGGAGGAACTAAGGCTGGAGAGAGTGAGCCACATCCTC
ACGGTGCCTGAGCCCCTCACCAGCGTCCTTTCAGTATTTCATAGGTAAGTAATCAAAAGG
TCTAAAAAGTTAATGACTTCACTGACGCTTATTCTCTGTGCTGAGAACATGATTTCTGGT
TTATTCAGGTTAGGAGGACACAGTAACACCTCTGAAATGGTGTGAAAACTCATTGTCAAA
GGGCACTTAGGTCAGACAAGGGCTCCCTTTCCCGTCACCTCCCAAACGCCCCCCCTTCGG
GGGCGGGGAGGCACCATTCACTTGGGAGAACTGCTGCTGTGAAACAACAGTGACGGCTGT
GGTGCAACTGTGGTCTTGTGACATGAGCCAGGTAACCAGGTAACTGTCATTTGAGAGAAC
TAATGGTTTTTTCTTTTCCTGGATAGAATCCATGACAGTTCAAAAGGTGAAAGGCTTCCT
GTCGCGTCTCCTGTGCACCTGAAGATGGGGAACTCAAAACACCACAACCATTTTTGCTCA
AAGTTGACCAGCTAACACTGAAGATAAAATATCCTAATCAACTTGGTCAGAGAGTCATAG
AGAAACAACTGCCAGAATCCATGACAGTTCAAAAGGTGAAAGGCTTCCTGTCGCGTCTCC
TCAAAGTGTCTGTGTCAGAACTTCTCTTGTCCTATGAAAGTCCCAAAATGCCGGGCAGAG
AGATTGAACTAGAAAATGATCAGCAGTCATTACAGTTTTATTCTATAGAAAATGGAGACT
GTCTATTAGTGCGATGGTAGCAGCCAACTAAGAAAATCCAGAGATTAGAAAATTCATTTA
TCATGACTGGACGTAAATGACTTCTTGGGACAGTTATGTCCAAAAAAAAGGTTTCACCAC
TTATCCTAAATAGAAAACAGCTGTTATTTTTCATAGGGCAAAGACCAAGGCTTGTATATA
TAATAGCAATAATAAAAGCTTTGCATCTACTAAAAAAAAAAAAAAAAAATTTCATATAGT
ATTTTAGTTTATAACTATTTCGTTATGTGAAGTTTAAATGCTAAATAGAACCTCACTAGT
CTAATAAACCTGAACACAGTTAATGTCTGTCACAAAGACCAGTTTTTTGTTTTTGTCTTT
CTAGGGCCGCACCTGCAGCATATGGAAGTTCGTTCCCATGTAGGGGTCAAATCAGAGCTG
TAGCTGGTGGCCTACACCATAGCCATGGCAATACCAGATCTGGGCCATGTCTGCAATCTA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTTCATTCTAAAATAAAGATAACATTTATTATCACAATTGCATAAAAACACAGACAGCTT
TTACAAAAATGATTTTTGATAGAAAAATAGTTGTTTGAATACATGTGATTTTTGTAGGAA
CACCACACTATTGCTGTACTTCCAGCTAAAGCTTCAAAGAAACTAAATTTCTTATAATCA
AAATAATCCAGCATTTACCACAACCCATCTTTGGAAAGAAGTTCATAGTGTTTTCTGAAC
AAATCAAAGCATTACTCACTAAGTTATACTCCCGTGCCTGACAGTCCCTGTGTGTGTGTG
TCGCACATAGTCACACACTGATGACAGACTGGGAGCGCTGGAAGGGGGCTCGGAGCCCGT
TCTTCTGCCCCTCACTTTTCAGAGGAGGAACTAAGGCTGGAGAGAGTGAGCCACATCCTC
ACGGTGCCTGAGCCCCTCACCAGCGTCCTTTCAGTATTTCATAGGTAAGTAATCAAAAGG
TCTAAAAAGTTAATGACTTCACTGACGCTTATTCTCTGTGCTGAGAACATGATTTCTGGT
TTATTCAGGTTAGGAGGACACAGTAACACCTCTGAAATGGTGTGAAAACTCATTGTCAAA
GGGCACTTAGGTCAGACAAGGGCTCCCTTTCCCGTCACCTCCCAAACGCCCCCCCTTCGG
GGGCGGGGAGGCACCATTCACTTGGGAGAACTGCTGCTGTGAAACAACAGTGACGGCTGT
GGTGCAACTGTGGTCTTGTGACATGAGCCAGGTAACCAGGTAACTGTCATTTGAGAGAAC
TAATGGTTTTTTCTTTTCCTGGATAGAATCCATGACAGTTCAAAAGGTGAAAGGCTTCCT
GTCGCGTCTCCTGTGCACCTGAAGATGGGGAACTCAAAACACCACAACCATTTTTGCTCA
AAGTTGACCAGCTAACACTGAAGATAAAATATCCTAATCAACTTGGTCAGAGAGTCATAG
AGAAACAACTGCCAGAATCCATGACAGTTCAAAAGGTGAAAGGCTTCCTGTCGCGTCTCC
TCAAAGTGTCTGTGTCAGAACTTCTCTTGTCCTATGAAAGTCCCAAAATGCCGGGCAGAG
AGATTGAACTAGAAAATGATCAGCAGTCATTACAGTTTTATTCTATAGAAAATGGAGACT
GTCTATTAGTGCGATGGTAGCAGCCAACTAAGAAAATCCAGAGATTAGAAAATTCATTTA
TCATGACTGGACGTAAATGACTTCTTGGGACAGTTATGTCCAAAAAAAAGGTTTCACCAC
TTATCCTAAATAGAAAACAGCTGTTATTTTTCATAGGGCAAAGACCAAGGCTTGTATATA
TAATAGCAATAATAAAAGCTTTGCATCTACTAAAAAAAAAAAAAAAAAATTTCATATAGT
ATTTTAGTTTATAACTATTTCGTTATGTGAAGTTTAAATGCTAAATAGAACCTCACTAGT
CTAATAAACCTGAACACAGTTAATGTCTGTCACAAAGACCAGTTTTTTGTTTTTGTCTTT
CTAGGGCCGCACCTGCAGCATATGGAAGTTCGTTCCCATGTAGGGGTCAAATCAGAGCTG
TAGCTGGTGGCCTACACCATAGCCATGGCAATACCAGATCTGGGCCATGTCTGCAATCTA |
|
gi|61846347|ref|XP_593008.1| |
Protein identifier
|
gi|61846347|ref|XP_593008.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-307, gnl|bosTau2|chr28 (2969401-2969102) |
|
1-307, gnl|Hg17|chr1 (231936570-231936870) |
|
1-307, gnl|Mm7|chr13 (13364835-13364555) |
| |
|
370-654, gnl|bosTau2|chr28 (2969009-2968736) |
|
370-654, gnl|canFam2|chr4 (7489779-7489331) |
|
370-654, gnl|dasNov1|scaffold_2442 (75532-76013) |
|
370-654, gnl|echTel1|scaffold_278814 (5697-5215) |
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370-654, gnl|hg17|chr1 (231936729-231937212) |
|
370-654, gnl|Hg17|chr1 (231936937-231937240) |
|
370-654, gnl|loxAfr1|scaffold_10535 (74425-73921) |
|
370-654, gnl|mm7|chr13 (13364688-13364315) |
|
370-654, gnl|monDom2|scaffold_13 (50223141-50222633) |
|
370-654, gnl|oryCun1|scaffold_194891 (2585-3010) |
|
370-654, gnl|panTro1|chr1 (215768814-215769305) |
|
370-654, gnl|rheMac2|chr1 (221564395-221563912) |
|
370-654, gnl|rn3|chr17 (59542868-59543283) |
| |
|
707-852, gnl|bosTau2|chr28 (2968649-2968505) |
|
707-852, gnl|Hg17|chr1 (231937598-231937750) |
| |
|
1068-1454, gnl|bosTau2|chr28 (2968270-2967882) |
|
1068-1454, gnl|Hg17|chr1 (231938026-231938432) |
|
1068-1454, gnl|Mm7|chr13 (13363943-13363618) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-307, gnl|bosTau2|chr28 (2969401-2969102) |
|
1-307, gnl|Hg17|chr1 (231936570-231936870) |
|
1-307, gnl|Mm7|chr13 (13364835-13364555) |
| |
|
370-654, gnl|bosTau2|chr28 (2969009-2968736) |
|
370-654, gnl|canFam2|chr4 (7489779-7489331) |
|
370-654, gnl|dasNov1|scaffold_2442 (75532-76013) |
|
370-654, gnl|echTel1|scaffold_278814 (5697-5215) |
|
370-654, gnl|hg17|chr1 (231936729-231937212) |
|
370-654, gnl|Hg17|chr1 (231936937-231937240) |
|
370-654, gnl|loxAfr1|scaffold_10535 (74425-73921) |
|
370-654, gnl|mm7|chr13 (13364688-13364315) |
|
370-654, gnl|monDom2|scaffold_13 (50223141-50222633) |
|
370-654, gnl|oryCun1|scaffold_194891 (2585-3010) |
|
370-654, gnl|panTro1|chr1 (215768814-215769305) |
|
370-654, gnl|rheMac2|chr1 (221564395-221563912) |
|
370-654, gnl|rn3|chr17 (59542868-59543283) |
| |
|
707-852, gnl|bosTau2|chr28 (2968649-2968505) |
|
707-852, gnl|Hg17|chr1 (231937598-231937750) |
| |
|
1068-1454, gnl|bosTau2|chr28 (2968270-2967882) |
|
1068-1454, gnl|Hg17|chr1 (231938026-231938432) |
|
1068-1454, gnl|Mm7|chr13 (13363943-13363618) |
|
elu (0.385356) |
|
mcp (0.341297) |
|
bfe (0.299715) |
|
thg (0.253582) |
|
ebs (0.236602) |
|
tes (0.207814) |
|
nlu (0.191681) |
|
sag (0.182715) |
|
gul (0.177588) |
|
spl (0.143184) |
|
sug (0.127291) |
|
tra (0.123092) |
|
cty (0.10408) |
|
nbm (0.0993246) |
|
elu (0.385356) |
|
mcp (0.341297) |
|
bfe (0.299715) |
|
thg (0.253582) |
|
ebs (0.236602) |
|
tes (0.207814) |
|
nlu (0.191681) |
|
sag (0.182715) |
|
gul (0.177588) |
|
spl (0.143184) |
|
sug (0.127291) |
|
tra (0.123092) |
|
cty (0.10408) |
|
nbm (0.0993246) |
