Non-Coding RNA Search

Ss1.1-Pig4-TMW8054J22.5

Sequence:


               
               GGCTCTGGCCTCTCTCTGGAGCTGGGATGCTCCGTGTCCCCTCGCTCTTTCCTGGACACT
TGCTCCAGGACACTTGCCACCTGCAGCGCCCGGGGCGAGCGGGACGCGCTCGGCCGCGTC
CGGGGCTCACGCGGGGGAATCCTTGCAGTGGGAGTCGAGAACATTTCCTAGCGCCCGAGC
CATGGTGGCCAAACAGCGGATCCGGATGGCTAACGAGAAGCACAGCAAAAACATCACCCA
GAGGGGGAACGTAGCCAAAACCCTGAGGCCGCAAGAAGAGAAGTATCCTGTAGGACCATG
GCTCTTGGCCCTGTTCGTTTTTGTTGTCTGCGGCTCAGCTATCTTCCAGATCATTCAGAG
CATAAGGATGGGCATGTGAGCCGGCTGGGCTTTAAGCCCACCCTCCCCCCGACCCCCGGA
GGGCGGAGGACCATTTCAGCTCGTGGCCAGGTAGCTGCGGGAAGCCGACCAGCCGCCCCG
GAGAGAAAAAAAGGCTCCCTCCAGTGTCCCCCCTGCCCCGATCCCTGCATCGTGGATGTC
AGACCAAATTGCCTTCTCAGAGGACATCTCGGCCCCTCCGAGTTCTCCAGCGGAAAGGAC
GTTTGGCTTTGCTCTTGGCAGGATTGGTCCTTCCCGGATTGGTGTCTGCGGCGGGCCCTG
TCTGTCCGGGTGTGGCCCTGGGTTTCCGTGATGTCTGCATGTGGGCCTCGGAATGATCAC
CGCTTTACTTTCTACGGATACAATTTCTGCTCCATTGGGAATTGCTTTTACAAATAAATG
TCTTTGTTCAACCTTAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTCTGGCCTCTCTCTGGAGCTGGGATGCTCCGTGTCCCCTCGCTCTTTCCTGGACACT
TGCTCCAGGACACTTGCCACCTGCAGCGCCCGGGGCGAGCGGGACGCGCTCGGCCGCGTC
CGGGGCTCACGCGGGGGAATCCTTGCAGTGGGAGTCGAGAACATTTCCTAGCGCCCGAGC
CATGGTGGCCAAACAGCGGATCCGGATGGCTAACGAGAAGCACAGCAAAAACATCACCCA
GAGGGGGAACGTAGCCAAAACCCTGAGGCCGCAAGAAGAGAAGTATCCTGTAGGACCATG
GCTCTTGGCCCTGTTCGTTTTTGTTGTCTGCGGCTCAGCTATCTTCCAGATCATTCAGAG
CATAAGGATGGGCATGTGAGCCGGCTGGGCTTTAAGCCCACCCTCCCCCCGACCCCCGGA
GGGCGGAGGACCATTTCAGCTCGTGGCCAGGTAGCTGCGGGAAGCCGACCAGCCGCCCCG
GAGAGAAAAAAAGGCTCCCTCCAGTGTCCCCCCTGCCCCGATCCCTGCATCGTGGATGTC
AGACCAAATTGCCTTCTCAGAGGACATCTCGGCCCCTCCGAGTTCTCCAGCGGAAAGGAC
GTTTGGCTTTGCTCTTGGCAGGATTGGTCCTTCCCGGATTGGTGTCTGCGGCGGGCCCTG
TCTGTCCGGGTGTGGCCCTGGGTTTCCGTGATGTCTGCATGTGGGCCTCGGAATGATCAC
CGCTTTACTTTCTACGGATACAATTTCTGCTCCATTGGGAATTGCTTTTACAAATAAATG
TCTTTGTTCAACCTTAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55957628|emb|CAI12995.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55957628|emb|CAI12995.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-265, gnl|bosTau2|chr12 (5621349-5621082)
               

               
               1-265, gnl|Hg17|chr13 (43845971-43846245)
               

               
               1-265, gnl|Mm7|chr14 (71237037-71236781)
               


               
               319-796, gnl|bosTau2|chr12 (5596813-5596340)
               

               
               319-796, gnl|Hg17|chr13 (43869388-43869850)
               

               
               319-796, gnl|Mm7|chr14 (71213614-71213162)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-265, gnl|bosTau2|chr12 (5621349-5621082)
               

               
               1-265, gnl|Hg17|chr13 (43845971-43846245)
               

               
               1-265, gnl|Mm7|chr14 (71237037-71236781)
               


               
               319-796, gnl|bosTau2|chr12 (5596813-5596340)
               

               
               319-796, gnl|Hg17|chr13 (43869388-43869850)
               

               
               319-796, gnl|Mm7|chr14 (71213614-71213162)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               cbr (1.15178)
               

               
               ebs (0.354904)
               

               
               hyp (0.285673)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               ese (0.126502)

Expressed library(ies): 10 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (1.15178)
               

               
               ebs (0.354904)
               

               
               hyp (0.285673)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               ese (0.126502)

	1-265, gnl\|bosTau2\|chr12 (5621349-5621082)
	1-265, gnl\|Hg17\|chr13 (43845971-43846245)
	1-265, gnl\|Mm7\|chr14 (71237037-71236781)

	319-796, gnl\|bosTau2\|chr12 (5596813-5596340)
	319-796, gnl\|Hg17\|chr13 (43869388-43869850)
	319-796, gnl\|Mm7\|chr14 (71213614-71213162)

	cbr (1.15178)
	ebs (0.354904)
	hyp (0.285673)
	ecc (0.23007)
	ece (0.229305)
	fcc (0.197785)
	fbs (0.175346)
	fhi (0.169578)
	fco (0.157208)
	ese (0.126502)