Non-Coding RNA Search

Ss1.1-Pig4-TMW8054K01.5

Sequence:


               
               ATCCTAAGGAATCTCTGCACATGGCCCCCTAATCAGAGGCCACATTTGTAGTATTTTGGG
GGAGCATCATCTATGTCATATAGCAGCTGCCAAACCCCTTAGCTGTCTCAGTAAGGACCC
TCTTTACTGCTCGGGGCAATTAATTGTTCCCCAGAGGCCATTACTCTGGAGATTGTTCGG
CCTCCGAAATCTGTGTTTTTTGGGGTTTGTTTGTTTAAAGGCTGCACCTGCGGCATATGG
AGGTTCCTACGCTAGGGGTCGAATTGGAGCTACAGCTGCCTGCATGTGCCAGAGCCACAG
CAGTGCCAGGTCCTCAGCCCCCTGAGTGAGGCCAGGGATCAAACCCACAGCCTCAAGGTT
CCTAGTTGAATTCGTTTCTGCTGCACCATGACAGGATCTCCCAAAAATCTATGTTTTAAA
GATAATTTCACAAGGCAATAGGTAACACCTGAAAATTCGGCCTCATAGATTCATTTTCAG
GGCAAGCCAGAATCCAGTAGGTGGTTTATTCCTGGATGTTTGAGAGGATCTCACAGTTGA
AACCCTAAATGAACGGTATACCTGGGCTTTTTCCTGGAGCAGGAACGCCCTTAAGATATC
ATTTGTGTGAGACAATTCTTAAAATTGTAGTGATTATTTGTACTTTTCTTTTTATGAGAA
AACCATGTTTCCGTACTTCTGGGATAATCCATCTGAATGCGAAAGGACCTTCTCCCTCCA
AATTCCAGCAGGAGACATGCATTGTCATGATTCTGCCTCCTTCATAGGGTGATGTATTGA
GTTCACCATTTCCCTGTATTCTGTTTAAATAGCTGTAGTGTTCTCAAGAGCACCTTGTAG
AGAAGCTGGCTTCTAGCTGTTAGGCTTCCAAGCCGAGTTTTATCTTTTCACCTGTGTAAG
TTATCTATTGCTATTTAATAGATTACCCCCAATTAAAAATCTTAAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCCTAAGGAATCTCTGCACATGGCCCCCTAATCAGAGGCCACATTTGTAGTATTTTGGG
GGAGCATCATCTATGTCATATAGCAGCTGCCAAACCCCTTAGCTGTCTCAGTAAGGACCC
TCTTTACTGCTCGGGGCAATTAATTGTTCCCCAGAGGCCATTACTCTGGAGATTGTTCGG
CCTCCGAAATCTGTGTTTTTTGGGGTTTGTTTGTTTAAAGGCTGCACCTGCGGCATATGG
AGGTTCCTACGCTAGGGGTCGAATTGGAGCTACAGCTGCCTGCATGTGCCAGAGCCACAG
CAGTGCCAGGTCCTCAGCCCCCTGAGTGAGGCCAGGGATCAAACCCACAGCCTCAAGGTT
CCTAGTTGAATTCGTTTCTGCTGCACCATGACAGGATCTCCCAAAAATCTATGTTTTAAA
GATAATTTCACAAGGCAATAGGTAACACCTGAAAATTCGGCCTCATAGATTCATTTTCAG
GGCAAGCCAGAATCCAGTAGGTGGTTTATTCCTGGATGTTTGAGAGGATCTCACAGTTGA
AACCCTAAATGAACGGTATACCTGGGCTTTTTCCTGGAGCAGGAACGCCCTTAAGATATC
ATTTGTGTGAGACAATTCTTAAAATTGTAGTGATTATTTGTACTTTTCTTTTTATGAGAA
AACCATGTTTCCGTACTTCTGGGATAATCCATCTGAATGCGAAAGGACCTTCTCCCTCCA
AATTCCAGCAGGAGACATGCATTGTCATGATTCTGCCTCCTTCATAGGGTGATGTATTGA
GTTCACCATTTCCCTGTATTCTGTTTAAATAGCTGTAGTGTTCTCAAGAGCACCTTGTAG
AGAAGCTGGCTTCTAGCTGTTAGGCTTCCAAGCCGAGTTTTATCTTTTCACCTGTGTAAG
TTATCTATTGCTATTTAATAGATTACCCCCAATTAAAAATCTTAAAAG

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               510-942, gnl|bosTau2|chr28 (20607163-20606739)
               

               
               510-942, gnl|Hg17|chr10 (71854299-71854723)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               510-942, gnl|bosTau2|chr28 (20607163-20606739)
               

               
               510-942, gnl|Hg17|chr10 (71854299-71854723)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               mas (0.42061)
               

               
               vin (0.332557)
               

               
               pty (0.142714)
               

               
               thg (0.126791)
               

               
               ecc (0.115035)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.42061)
               

               
               vin (0.332557)
               

               
               pty (0.142714)
               

               
               thg (0.126791)
               

               
               ecc (0.115035)

	510-942, gnl\|bosTau2\|chr28 (20607163-20606739)
	510-942, gnl\|Hg17\|chr10 (71854299-71854723)

	mas (0.42061)
	vin (0.332557)
	pty (0.142714)
	thg (0.126791)
	ecc (0.115035)