Non-Coding RNA Search

Ss1.1-Pig4-TMW8054K02.5

Sequence:


               
               CCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCTGCACCTTTGCGTTTCTACCGACT
GCCCAACGTCTTTACCGGGAGGAAGAAGCGGGTGAAAAACAAAAGCTGCTCTTTCCACGG
TCCTGCCCTTTTCTGCAGACTTGTTCCGAGGCCGAGGAGCCTTTGTTGGAAGAGATGGTG
ATATTGCTGGGCCCCCTGCTGTTGGTCTTCATGCTGGGTCTGGGTCTGGCCCCGCTGAGC
CTGGCTAAGGATGAAGACAGGTACACACACTTCCTGACCCAGCACTACGATGCCAAACCA
AAGGGCCGGGATGGCAGATACTGTGAAAGCATAATGAAGCAACGAGGCCTGACCAGACCC
TGCAAAGAGGTCAACACCTTTATTCATGGCACGAGGAATGATATCAAGGCCATCTGTAAT
GATAAGAATGGAGAGCCTTACAACAATTTCAGAAGAAGCAAGTCTCCTTTCCAAATTACC
ACTTGCAAGCATAAGGGAGGGTCCAACCGGCCTCCATGTGGGTACAGGGCCACAGCAGGG
TTCAGAACCATAGCTGTTGCCTGTGAAAATGGCTTGCCTGTCCACTTTGATGAGTCCTTT
ATCATTACAAGCCAGTAGCCCAGATCTGGCTCTGCTCTTCTTTCCTTGCTTTGGATCCCC
CAGACACCCCCACACGCCTACTCCAGCCCCCGCCACCAGCCTTCCACCGAATAGTGGTGG
CAAGATTCATTGCCAGTGGTCTAGAAAATAAGGTGTCTGATCTTTCATTTTCTGTTCTAC
AATATGTTCAATAAATAAAAACATGTCTGAAAGCAGAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCTGCACCTTTGCGTTTCTACCGACT
GCCCAACGTCTTTACCGGGAGGAAGAAGCGGGTGAAAAACAAAAGCTGCTCTTTCCACGG
TCCTGCCCTTTTCTGCAGACTTGTTCCGAGGCCGAGGAGCCTTTGTTGGAAGAGATGGTG
ATATTGCTGGGCCCCCTGCTGTTGGTCTTCATGCTGGGTCTGGGTCTGGCCCCGCTGAGC
CTGGCTAAGGATGAAGACAGGTACACACACTTCCTGACCCAGCACTACGATGCCAAACCA
AAGGGCCGGGATGGCAGATACTGTGAAAGCATAATGAAGCAACGAGGCCTGACCAGACCC
TGCAAAGAGGTCAACACCTTTATTCATGGCACGAGGAATGATATCAAGGCCATCTGTAAT
GATAAGAATGGAGAGCCTTACAACAATTTCAGAAGAAGCAAGTCTCCTTTCCAAATTACC
ACTTGCAAGCATAAGGGAGGGTCCAACCGGCCTCCATGTGGGTACAGGGCCACAGCAGGG
TTCAGAACCATAGCTGTTGCCTGTGAAAATGGCTTGCCTGTCCACTTTGATGAGTCCTTT
ATCATTACAAGCCAGTAGCCCAGATCTGGCTCTGCTCTTCTTTCCTTGCTTTGGATCCCC
CAGACACCCCCACACGCCTACTCCAGCCCCCGCCACCAGCCTTCCACCGAATAGTGGTGG
CAAGATTCATTGCCAGTGGTCTAGAAAATAAGGTGTCTGATCTTTCATTTTCTGTTCTAC
AATATGTTCAATAAATAAAAACATGTCTGAAAGCAGAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|399038|sp|P31346|ANGI_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|399038|sp|P31346|ANGI_PIG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               155-652, gnl|bosTau2|chr10 (16768003-16767503)
               

               
               155-652, gnl|Hg17|chr14 (20231544-20232056)
               

               
               155-652, gnl|Mm7|chr14 (46435282-46435782)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               155-652, gnl|bosTau2|chr10 (16768003-16767503)
               

               
               155-652, gnl|Hg17|chr14 (20231544-20232056)
               

               
               155-652, gnl|Mm7|chr14 (46435282-46435782)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               cli (1.06968)
               

               
               fli (0.608643)
               

               
               nlu (0.383362)
               

               
               nmm (0.265604)
               

               
               jca (0.22792)
               

               
               col (0.195008)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               eru (0.120048)

Expressed library(ies): 11 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (1.06968)
               

               
               fli (0.608643)
               

               
               nlu (0.383362)
               

               
               nmm (0.265604)
               

               
               jca (0.22792)
               

               
               col (0.195008)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               eru (0.120048)

	155-652, gnl\|bosTau2\|chr10 (16768003-16767503)
	155-652, gnl\|Hg17\|chr14 (20231544-20232056)
	155-652, gnl\|Mm7\|chr14 (46435282-46435782)

	cli (1.06968)
	fli (0.608643)
	nlu (0.383362)
	nmm (0.265604)
	jca (0.22792)
	col (0.195008)
	eye (0.170503)
	cje (0.165235)
	pla (0.133672)
	ute (0.132784)
	eru (0.120048)