Non-Coding RNA Search

Ss1.1-Pig4-TMW8054K03.3

Sequence:


               
               GTTTTTCTTCACATACCTCCTGCCACATAGTGCCCCGCCCTCGCTACGGCCTCTGCTGGA
CAGCATTGTCAATGCCACAGGAGAGCTCACCTGGGGAGTGGACGAGACCCTGGCCCAGCT
GGAGAAGGTGCTGCACCTGTACCGGAGCGGGCAATATCTGCAGAACTCCACGGCAGGCAG
CAGAGCTGAGTACCAGCGCCTCCCAGACAGTACCATCCCGCAGGAAGACTACCGCTGCTG
GCCATCCTACCACCACGGAGGCTGCCTCCTTTCAGTATTTAACCTGGCTGAGGCTGTGGA
CATCTGTGAGAGCCACACCCAGTGCCGGGCCTTTGTGGTCACCAACCAGACCACCTGGAC
AGGTCGGCAACTGGTCTTTTTCAAGACAGGATGGAGTCATGTGGTCCCTGATCCCAGCAA
GACCACATATGTGAGAGCCTCTGGCTGACCCTCTGCGGGCTCAGCTGACCATCCCCACCA
GCTGGGCTTGCCTGTGACTTGCACTAGCAGCACTGCATGTCACCTGGGCACCCTGCAGAC
AAGGCTGACATCCCAGACAGACCGAGGTGACCAGGACAACGTGCAATAATGCCAAATGTT
AAAATGTGAGTTTACCAGTCTATGTCTGGGAGTGCTGGCTCCAGGGCCAGGAATCTTGGG
GGCTGAGTGCCCCTCCCACCCTCTGGGCTGCCAGCAAGGCTCAGGCTGGTCTCCCTGTTG
GGGGCTCTGCCCCTCACTGGGACAATTCTGTGGGCAGCCCCATCACTGTGTTCGTAGTGT
GAGAATGTAGCCAGAGCCCCTGCTGCTGGTGCTGCTGCATGTGTCATGGCCCAGCAGGGG
CCGCGCGGGGACAATCGGTCATGGAGTGTTCTCTCAGCCAAGCTCCCAACGGGAGGCTTA
AAGGGATGCTCTGGGATGTGGGCGAATCTGTACCTGAGGCGGTCGCCTCTGGGCCCCCGA
CAGGGGGCGCTCACCGACCGGCCCCGGGGGCCTGGGGCAGAGGAGCACACAAGGTCTGAG
CCAAGTCGTGGGGTTGAGGAGCAGGTTTGAGCCAGGACCTGGGGTGGGGGTGGGGCCGGG
GCCTTTCTGCCTCATTTGCTTTCAGTGAAAGCCGCAAAGCAGCCAAAACCAGCCTCTCCC
CCCTCCTGGAGTTTGTATATCCAGAAGCTTTTGTACTTCTTGTTCATTAAAATGTTTATT
TTTGTAAAAAAAAGAAAGAAAGAAAAAAATCAATGAATAAAATGACATTTCACGGCAAGG
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTTCTTCACATACCTCCTGCCACATAGTGCCCCGCCCTCGCTACGGCCTCTGCTGGA
CAGCATTGTCAATGCCACAGGAGAGCTCACCTGGGGAGTGGACGAGACCCTGGCCCAGCT
GGAGAAGGTGCTGCACCTGTACCGGAGCGGGCAATATCTGCAGAACTCCACGGCAGGCAG
CAGAGCTGAGTACCAGCGCCTCCCAGACAGTACCATCCCGCAGGAAGACTACCGCTGCTG
GCCATCCTACCACCACGGAGGCTGCCTCCTTTCAGTATTTAACCTGGCTGAGGCTGTGGA
CATCTGTGAGAGCCACACCCAGTGCCGGGCCTTTGTGGTCACCAACCAGACCACCTGGAC
AGGTCGGCAACTGGTCTTTTTCAAGACAGGATGGAGTCATGTGGTCCCTGATCCCAGCAA
GACCACATATGTGAGAGCCTCTGGCTGACCCTCTGCGGGCTCAGCTGACCATCCCCACCA
GCTGGGCTTGCCTGTGACTTGCACTAGCAGCACTGCATGTCACCTGGGCACCCTGCAGAC
AAGGCTGACATCCCAGACAGACCGAGGTGACCAGGACAACGTGCAATAATGCCAAATGTT
AAAATGTGAGTTTACCAGTCTATGTCTGGGAGTGCTGGCTCCAGGGCCAGGAATCTTGGG
GGCTGAGTGCCCCTCCCACCCTCTGGGCTGCCAGCAAGGCTCAGGCTGGTCTCCCTGTTG
GGGGCTCTGCCCCTCACTGGGACAATTCTGTGGGCAGCCCCATCACTGTGTTCGTAGTGT
GAGAATGTAGCCAGAGCCCCTGCTGCTGGTGCTGCTGCATGTGTCATGGCCCAGCAGGGG
CCGCGCGGGGACAATCGGTCATGGAGTGTTCTCTCAGCCAAGCTCCCAACGGGAGGCTTA
AAGGGATGCTCTGGGATGTGGGCGAATCTGTACCTGAGGCGGTCGCCTCTGGGCCCCCGA
CAGGGGGCGCTCACCGACCGGCCCCGGGGGCCTGGGGCAGAGGAGCACACAAGGTCTGAG
CCAAGTCGTGGGGTTGAGGAGCAGGTTTGAGCCAGGACCTGGGGTGGGGGTGGGGCCGGG
GCCTTTCTGCCTCATTTGCTTTCAGTGAAAGCCGCAAAGCAGCCAAAACCAGCCTCTCCC
CCCTCCTGGAGTTTGTATATCCAGAAGCTTTTGTACTTCTTGTTCATTAAAATGTTTATT
TTTGTAAAAAAAAGAAAGAAAGAAAAAAATCAATGAATAAAATGACATTTCACGGCAAGG
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|33873699|gb|AAH07901.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|33873699|gb|AAH07901.2|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               360-471, - strand, RNAz p=0.905055
               

               
               617-808, - strand, RNAz p=0.998931
               

               
               847-961, + strand, RNAz p=0.856339

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               360-471, - strand, RNAz p=0.905055
               

               
               617-808, - strand, RNAz p=0.998931
               

               
               847-961, + strand, RNAz p=0.856339

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC094697, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC094697, +

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               78-186, gnl|bosTau2|chr11 (18251879-18251771)
               

               
               78-186, gnl|canFam2|chr17 (36773711-36773859)
               

               
               78-186, gnl|danRer3|chr13 (1127741-1127625)
               

               
               78-186, gnl|dasNov1|scaffold_100536 (3287-3200)
               

               
               78-186, gnl|echTel1|scaffold_159036 (3720-3867)
               

               
               78-186, gnl|hg17|chr2 (42194056-42194205)
               

               
               78-186, gnl|Hg17|chr2 (42194074-42194182)
               

               
               78-186, gnl|loxAfr1|scaffold_61991 (7780-7631)
               

               
               78-186, gnl|mm7|chr17 (81516553-81516701)
               

               
               78-186, gnl|Mm7|chr17 (81516571-81516676)
               

               
               78-186, gnl|monDom2|scaffold_1 (42506-42661)
               

               
               78-186, gnl|oryCun1|scaffold_205116 (59505-59361)
               

               
               78-186, gnl|panTro1|chr12 (43758928-43759077)
               

               
               78-186, gnl|rn3|chr6 (6560762-6560907)
               

               
               78-186, gnl|xenTro1|scaffold_30 (434015-434129)
               


               
               360-1261, gnl|bosTau2|chr11 (18249520-18248613)
               

               
               360-1261, gnl|Hg17|chr2 (42196391-42197308)
               

               
               360-1261, gnl|Mm7|chr17 (81518637-81519516)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               78-186, gnl|bosTau2|chr11 (18251879-18251771)
               

               
               78-186, gnl|canFam2|chr17 (36773711-36773859)
               

               
               78-186, gnl|danRer3|chr13 (1127741-1127625)
               

               
               78-186, gnl|dasNov1|scaffold_100536 (3287-3200)
               

               
               78-186, gnl|echTel1|scaffold_159036 (3720-3867)
               

               
               78-186, gnl|hg17|chr2 (42194056-42194205)
               

               
               78-186, gnl|Hg17|chr2 (42194074-42194182)
               

               
               78-186, gnl|loxAfr1|scaffold_61991 (7780-7631)
               

               
               78-186, gnl|mm7|chr17 (81516553-81516701)
               

               
               78-186, gnl|Mm7|chr17 (81516571-81516676)
               

               
               78-186, gnl|monDom2|scaffold_1 (42506-42661)
               

               
               78-186, gnl|oryCun1|scaffold_205116 (59505-59361)
               

               
               78-186, gnl|panTro1|chr12 (43758928-43759077)
               

               
               78-186, gnl|rn3|chr6 (6560762-6560907)
               

               
               78-186, gnl|xenTro1|scaffold_30 (434015-434129)
               


               
               360-1261, gnl|bosTau2|chr11 (18249520-18248613)
               

               
               360-1261, gnl|Hg17|chr2 (42196391-42197308)
               

               
               360-1261, gnl|Mm7|chr17 (81518637-81519516)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               eru (0.480192)
               

               
               pty (0.285429)
               

               
               cbe (0.239234)
               

               
               ill (0.175593)
               

               
               cov (0.132153)
               

               
               eep (0.122564)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.480192)
               

               
               pty (0.285429)
               

               
               cbe (0.239234)
               

               
               ill (0.175593)
               

               
               cov (0.132153)
               

               
               eep (0.122564)

	360-471, - strand, RNAz p=0.905055
	617-808, - strand, RNAz p=0.998931
	847-961, + strand, RNAz p=0.856339

	78-186, gnl\|bosTau2\|chr11 (18251879-18251771)
	78-186, gnl\|canFam2\|chr17 (36773711-36773859)
	78-186, gnl\|danRer3\|chr13 (1127741-1127625)
	78-186, gnl\|dasNov1\|scaffold_100536 (3287-3200)
	78-186, gnl\|echTel1\|scaffold_159036 (3720-3867)
	78-186, gnl\|hg17\|chr2 (42194056-42194205)
	78-186, gnl\|Hg17\|chr2 (42194074-42194182)
	78-186, gnl\|loxAfr1\|scaffold_61991 (7780-7631)
	78-186, gnl\|mm7\|chr17 (81516553-81516701)
	78-186, gnl\|Mm7\|chr17 (81516571-81516676)
	78-186, gnl\|monDom2\|scaffold_1 (42506-42661)
	78-186, gnl\|oryCun1\|scaffold_205116 (59505-59361)
	78-186, gnl\|panTro1\|chr12 (43758928-43759077)
	78-186, gnl\|rn3\|chr6 (6560762-6560907)
	78-186, gnl\|xenTro1\|scaffold_30 (434015-434129)

	360-1261, gnl\|bosTau2\|chr11 (18249520-18248613)
	360-1261, gnl\|Hg17\|chr2 (42196391-42197308)
	360-1261, gnl\|Mm7\|chr17 (81518637-81519516)

	eru (0.480192)
	pty (0.285429)
	cbe (0.239234)
	ill (0.175593)
	cov (0.132153)
	eep (0.122564)