Non-Coding RNA Search

Ss1.1-Pig4-TMW8054K10.5

Sequence:


               
               CTGGACGAGAGGAGAGGGGGTCGGCTGGCAAGATGGCGGCTACTGCGGCCGGTGTGGGCC
GGTTGGAGGAAGAGGCATTGCGGCGAAAGGAACGGCTGAAGGCCCTACGGGAGAAAACCG
GGCGCAAGGACAAAGAAGACGGGGAGCCAAAGACTAAACAGCTCAGAGAAGGGGAGGAGG
AAGGCGAGAAGCACAGGGAACTCCGACTGCGGAACTATGTCCCAGAAGATGAGGACCTAA
AGAGAAGGAGGGTGCCCCAGGCCAAACCAGTCGCAGTGGAAGAGAAGGTCAAAGAGCAGC
TCGAGGCTGCCAAGCCAGAGCCTGTCATTGAGGAGGTGGACCTGGCCAACCTTGCACCCC
GGAAGCCTGATTGGGACCTCAAGAGAGACGTAGCCAAGAAGCTGGAGAAGCTAGAAAAGC
GGACCCAGAGGGCCATTGCTGAGCTGATCCGTGAGAGGCTGAAAGGCCAGGAGGACAGCC
TGGCCTCTGCAGTGGCCACCACCGAACAAGAAGCCTGTGACTCCGACTGAGGCATGCCCC
ATCCCCCCACGCTCCTGTCAGGCCTTTCCTAAAGGAGGATGGTCTTTGGCAGGGGTAGGG
GCCGGGCTTGCCATCACCTCCAGTTTGGCTTCAGAACAGTGACTCGCTGCCTATTAGTCT
GAACGTACCTGTCCCCATTGGGTGAGGTCAGCTCCTTGTCTCCTGAGTGGTCCCCCAGCT
CTTGAGTTGGGGCAAAGCCAACAACAACTCAGTGGGCTTATTGTCTCTATAGGTAGTTAT
GTATTTTGAACTTTTTTTGTATCTGGAAATAGAAACAAGCAGACCCCTGTGTGTGGCAGT
AACCTACTGAATATTTGGGGATACTCTAGGTTTGGGCCCCAAGACAGGGCAGCTGCAGAG
GTATAAGCCCTGTGTTGGGCTGAGCATGTTGAGGCTGGAGGGGAGGGGAAGGCCCAGGCC
TGAGCTTCAGTCCTTGGTCATCAGTGATCATTTCAAAACCCTTATGTAAGAGGGATAGGA
TCTGAAAGAGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGACGAGAGGAGAGGGGGTCGGCTGGCAAGATGGCGGCTACTGCGGCCGGTGTGGGCC
GGTTGGAGGAAGAGGCATTGCGGCGAAAGGAACGGCTGAAGGCCCTACGGGAGAAAACCG
GGCGCAAGGACAAAGAAGACGGGGAGCCAAAGACTAAACAGCTCAGAGAAGGGGAGGAGG
AAGGCGAGAAGCACAGGGAACTCCGACTGCGGAACTATGTCCCAGAAGATGAGGACCTAA
AGAGAAGGAGGGTGCCCCAGGCCAAACCAGTCGCAGTGGAAGAGAAGGTCAAAGAGCAGC
TCGAGGCTGCCAAGCCAGAGCCTGTCATTGAGGAGGTGGACCTGGCCAACCTTGCACCCC
GGAAGCCTGATTGGGACCTCAAGAGAGACGTAGCCAAGAAGCTGGAGAAGCTAGAAAAGC
GGACCCAGAGGGCCATTGCTGAGCTGATCCGTGAGAGGCTGAAAGGCCAGGAGGACAGCC
TGGCCTCTGCAGTGGCCACCACCGAACAAGAAGCCTGTGACTCCGACTGAGGCATGCCCC
ATCCCCCCACGCTCCTGTCAGGCCTTTCCTAAAGGAGGATGGTCTTTGGCAGGGGTAGGG
GCCGGGCTTGCCATCACCTCCAGTTTGGCTTCAGAACAGTGACTCGCTGCCTATTAGTCT
GAACGTACCTGTCCCCATTGGGTGAGGTCAGCTCCTTGTCTCCTGAGTGGTCCCCCAGCT
CTTGAGTTGGGGCAAAGCCAACAACAACTCAGTGGGCTTATTGTCTCTATAGGTAGTTAT
GTATTTTGAACTTTTTTTGTATCTGGAAATAGAAACAAGCAGACCCCTGTGTGTGGCAGT
AACCTACTGAATATTTGGGGATACTCTAGGTTTGGGCCCCAAGACAGGGCAGCTGCAGAG
GTATAAGCCCTGTGTTGGGCTGAGCATGTTGAGGCTGGAGGGGAGGGGAAGGCCCAGGCC
TGAGCTTCAGTCCTTGGTCATCAGTGATCATTTCAAAACCCTTATGTAAGAGGGATAGGA
TCTGAAAGAGTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8WUD4_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8WUD4_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               11-129, + strand, RNAz p=0.538686

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               11-129, + strand, RNAz p=0.538686

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_144716, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_144716, +

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               11-129, gnl|bosTau2|chr22 (41037802-41037683)
               

               
               11-129, gnl|canFam2|chr20 (44837674-44837575)
               

               
               11-129, gnl|dasNov1|scaffold_13786 (49650-49749)
               

               
               11-129, gnl|echTel1|scaffold_259320 (1407-1506)
               

               
               11-129, gnl|hg17|chr3 (46993131-46993230)
               

               
               11-129, gnl|Hg17|chr3 (46993247-46993130)
               

               
               11-129, gnl|loxAfr1|scaffold_54552 (4896-4995)
               

               
               11-129, gnl|mm7|chr9 (110354362-110354263)
               

               
               11-129, gnl|Mm7|chr9 (110354246-110354361)
               

               
               11-129, gnl|oryCun1|scaffold_179327 (59861-59762)
               

               
               11-129, gnl|panTro1|chr2 (48450890-48450989)
               

               
               11-129, gnl|rheMac2|chr2 (89564663-89564564)
               

               
               11-129, gnl|rn3|chr8 (115057526-115057427)
               


               
               453-970, gnl|bosTau2|chr22 (41001574-41001039)
               

               
               453-970, gnl|Hg17|chr3 (46938631-46938058)
               

               
               453-970, gnl|Mm7|chr9 (110408955-110409435)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-129, gnl|bosTau2|chr22 (41037802-41037683)
               

               
               11-129, gnl|canFam2|chr20 (44837674-44837575)
               

               
               11-129, gnl|dasNov1|scaffold_13786 (49650-49749)
               

               
               11-129, gnl|echTel1|scaffold_259320 (1407-1506)
               

               
               11-129, gnl|hg17|chr3 (46993131-46993230)
               

               
               11-129, gnl|Hg17|chr3 (46993247-46993130)
               

               
               11-129, gnl|loxAfr1|scaffold_54552 (4896-4995)
               

               
               11-129, gnl|mm7|chr9 (110354362-110354263)
               

               
               11-129, gnl|Mm7|chr9 (110354246-110354361)
               

               
               11-129, gnl|oryCun1|scaffold_179327 (59861-59762)
               

               
               11-129, gnl|panTro1|chr2 (48450890-48450989)
               

               
               11-129, gnl|rheMac2|chr2 (89564663-89564564)
               

               
               11-129, gnl|rn3|chr8 (115057526-115057427)
               


               
               453-970, gnl|bosTau2|chr22 (41001574-41001039)
               

               
               453-970, gnl|Hg17|chr3 (46938631-46938058)
               

               
               453-970, gnl|Mm7|chr9 (110408955-110409435)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               nep (0.183925)
               

               
               fty (0.17584)
               

               
               nje (0.16592)
               

               
               pty (0.142714)
               

               
               che (0.136314)
               

               
               cly (0.120642)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               nje (0.16592)
               

               
               pty (0.142714)
               

               
               che (0.136314)
               

               
               cly (0.120642)

	11-129, gnl\|bosTau2\|chr22 (41037802-41037683)
	11-129, gnl\|canFam2\|chr20 (44837674-44837575)
	11-129, gnl\|dasNov1\|scaffold_13786 (49650-49749)
	11-129, gnl\|echTel1\|scaffold_259320 (1407-1506)
	11-129, gnl\|hg17\|chr3 (46993131-46993230)
	11-129, gnl\|Hg17\|chr3 (46993247-46993130)
	11-129, gnl\|loxAfr1\|scaffold_54552 (4896-4995)
	11-129, gnl\|mm7\|chr9 (110354362-110354263)
	11-129, gnl\|Mm7\|chr9 (110354246-110354361)
	11-129, gnl\|oryCun1\|scaffold_179327 (59861-59762)
	11-129, gnl\|panTro1\|chr2 (48450890-48450989)
	11-129, gnl\|rheMac2\|chr2 (89564663-89564564)
	11-129, gnl\|rn3\|chr8 (115057526-115057427)

	453-970, gnl\|bosTau2\|chr22 (41001574-41001039)
	453-970, gnl\|Hg17\|chr3 (46938631-46938058)
	453-970, gnl\|Mm7\|chr9 (110408955-110409435)

	nep (0.183925)
	fty (0.17584)
	nje (0.16592)
	pty (0.142714)
	che (0.136314)
	cly (0.120642)