Non-Coding RNA Search

Ss1.1-Pig4-TMW8054K18.3

Sequence:


               
               TTGGTATGATATGAAAACCCATCAAGAAGTGACCAGCAGCCGCCTCTTCTCAGAAATCCA
GACCACCTTGGGGACTTTCGGTCTGAATGGGTTAGACAGGCTTCTGTGCTTTATGATCGT
CAAAGAGCTGCAGAATTTCCTCAGCATGTTTCAGAAAATTATCCTGAGAGACAGAACTGT
GCAGGAGACTTTAAAAACCCTCATGAATGCCGTCAGCCCCCTCAAAAGCATCGTAGCATA
TTCGAATAAAATTTATTTTTCGGCCATTGCCAAAACACAGAAGATTTGGACCGCGTATCT
CGAGGCTATCATGAAGGTGGGGCAGATGCAGATTCTGAGGCAACAGATCGCCAACGAGTT
GAATTATTCTTGTCGGTTTGACTCCAAACATCTGGCAGCTGCTCTGGAGAATCTCAATAA
GGCTCTCCTAGCAGATATCGAAGCCCATTACCAGGACCCTTCACTTCCTTACCCCAAAGA
AGATAACACACTCTTATATGAAATCACAGCCTACCTGGAGGCAGCTGGCATCCACAACCC
CCTGAACAAGATATACATAACGACAAAGCGCTTACCCTACTTTCCAGTTGTCAACTTTCT
GTTTTTGATCGCCCAGTTGCCAAAACTTCAGTACAACAAAAACCTAGGGATGGTCTGCCG
AAAAGCTGCCGACCCTGTGGATTGGCCACCGCTGGTGCTAGGGCTGCTGACCCTGCTGAA
GCAGTTTCATTCCCGGTACACGGAGCAGTTCCTGGCGCTGATCGGCCAGTTCATCCGCTC
CACAGTGGAGCAGTGTACGAGCCAGAAGATGCCTGAAATGCCTGCAGATGTCGTGGGTGC
CCTTCTGTTTCTGGAGGATTATGTTCGGTACACAAAGCTCCCCAGGAGGGTTGCTGAAGC
ACACGTGCCTAATTTCATTTTTGATGAGTTCAGAACAGTCCTGTAACTTTTTCTGCTTCT
TCACTGAAAGGATTATCCTTAAATCTTCCACCATCGCTAAAATGAACTTAGAAATGAAGC
TCAGCTGCTCATAGAACTGCACTTTTTCCCTTTATTGAGGAAAACGTCAGACATTCTGAG
TAATATGTATCTTACAGAACTAGTTAATATCATTAATACTGTTTAAATCATGGTATTACA
TGCAATTTATATCATGTAGAAGCAGAATACATTTTTGTACTGCCTCTTATAAGTGCTGAA
TGTAATTGTTATGTATAAATCCATTTAGTTTTATGTTCTAAAGAATTTATTTGTGCAACT
CCAGATTTTCAGTAAAACAGTGTTATCAGTACCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGGTATGATATGAAAACCCATCAAGAAGTGACCAGCAGCCGCCTCTTCTCAGAAATCCA
GACCACCTTGGGGACTTTCGGTCTGAATGGGTTAGACAGGCTTCTGTGCTTTATGATCGT
CAAAGAGCTGCAGAATTTCCTCAGCATGTTTCAGAAAATTATCCTGAGAGACAGAACTGT
GCAGGAGACTTTAAAAACCCTCATGAATGCCGTCAGCCCCCTCAAAAGCATCGTAGCATA
TTCGAATAAAATTTATTTTTCGGCCATTGCCAAAACACAGAAGATTTGGACCGCGTATCT
CGAGGCTATCATGAAGGTGGGGCAGATGCAGATTCTGAGGCAACAGATCGCCAACGAGTT
GAATTATTCTTGTCGGTTTGACTCCAAACATCTGGCAGCTGCTCTGGAGAATCTCAATAA
GGCTCTCCTAGCAGATATCGAAGCCCATTACCAGGACCCTTCACTTCCTTACCCCAAAGA
AGATAACACACTCTTATATGAAATCACAGCCTACCTGGAGGCAGCTGGCATCCACAACCC
CCTGAACAAGATATACATAACGACAAAGCGCTTACCCTACTTTCCAGTTGTCAACTTTCT
GTTTTTGATCGCCCAGTTGCCAAAACTTCAGTACAACAAAAACCTAGGGATGGTCTGCCG
AAAAGCTGCCGACCCTGTGGATTGGCCACCGCTGGTGCTAGGGCTGCTGACCCTGCTGAA
GCAGTTTCATTCCCGGTACACGGAGCAGTTCCTGGCGCTGATCGGCCAGTTCATCCGCTC
CACAGTGGAGCAGTGTACGAGCCAGAAGATGCCTGAAATGCCTGCAGATGTCGTGGGTGC
CCTTCTGTTTCTGGAGGATTATGTTCGGTACACAAAGCTCCCCAGGAGGGTTGCTGAAGC
ACACGTGCCTAATTTCATTTTTGATGAGTTCAGAACAGTCCTGTAACTTTTTCTGCTTCT
TCACTGAAAGGATTATCCTTAAATCTTCCACCATCGCTAAAATGAACTTAGAAATGAAGC
TCAGCTGCTCATAGAACTGCACTTTTTCCCTTTATTGAGGAAAACGTCAGACATTCTGAG
TAATATGTATCTTACAGAACTAGTTAATATCATTAATACTGTTTAAATCATGGTATTACA
TGCAATTTATATCATGTAGAAGCAGAATACATTTTTGTACTGCCTCTTATAAGTGCTGAA
TGTAATTGTTATGTATAAATCCATTTAGTTTTATGTTCTAAAGAATTTATTTGTGCAACT
CCAGATTTTCAGTAAAACAGTGTTATCAGTACCCAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55631228|ref|XP_519951.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55631228|ref|XP_519951.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               982-1289, gnl|bosTau2|chr2 (47126094-47126392)
               

               
               982-1289, gnl|Hg17|chr8 (126105942-126105692)
               

               
               982-1289, gnl|Mm7|chr15 (59398717-59398459)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               982-1289, gnl|bosTau2|chr2 (47126094-47126392)
               

               
               982-1289, gnl|Hg17|chr8 (126105942-126105692)
               

               
               982-1289, gnl|Mm7|chr15 (59398717-59398459)

Expressed library(ies): 21 entry(ies)

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Expressed library(ies): 21 entry(ies)

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               cki (0.660939)
               

               
               spc (0.566829)
               

               
               pro (0.512033)
               

               
               aor (0.390549)
               

               
               cbe (0.239234)
               

               
               cmu (0.186393)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               che (0.136314)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.660939)
               

               
               spc (0.566829)
               

               
               pro (0.512033)
               

               
               aor (0.390549)
               

               
               cbe (0.239234)
               

               
               cmu (0.186393)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               che (0.136314)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	982-1289, gnl\|bosTau2\|chr2 (47126094-47126392)
	982-1289, gnl\|Hg17\|chr8 (126105942-126105692)
	982-1289, gnl\|Mm7\|chr15 (59398717-59398459)

	cki (0.660939)
	spc (0.566829)
	pro (0.512033)
	aor (0.390549)
	cbe (0.239234)
	cmu (0.186393)
	mgm (0.180343)
	sto (0.179824)
	sin (0.174948)
	fhi (0.169578)
	lun (0.150489)
	fat (0.147427)
	liv (0.146284)
	che (0.136314)
	ute (0.132784)
	kid (0.129735)
	ova (0.129132)
	sug (0.127291)
	tra (0.123092)
	jca (0.11396)
	jej (0.0989218)