Non-Coding RNA Search

Ss1.1-Pig4-TMW8054K21.3

Sequence:


               
               TGAAAGAGGGCTAAGCTGAGGCCCTTCAGGGCTTTCCCTGGAAGTGGCAGATCGTCCCCT
GCTGAGGGGACGCCGGCGTGAATGGACCCAGTGAAGGCCATGAAGGTGCTGCTCCTCACG
GGGCTGGGAGCCCTGTTCTTCGCCTATTATTGGGGTGACAATTTTGACCCAGCCAGCCTC
CGTGGAGCCCGTGTGCTGTTAACAGGAGCCAGCGCAGGCGTTGGGGAGGAACTGGCATAT
CACTATGCGCGCCTGGGCTCACACCTGGTGCTCACTGCCCACACCGAGGCTCTCCTGCAG
AAAGTGGTAGGGAACTGCCGGAAGCTGGGCGCTCCCAAGGTCTTCTACATCGCTGCGGAC
ATGGCCTCCCCCGACGTGCCCGAGCGCGTGGTGCAGTTCGCTCTGGACAAGCTGGGAGGG
CTGGACTACCTGGTGCTGAACCATCTCGGCGCCGCCCCGGCAGGCACGCGGGCCCGCAGC
GCCCAGGCGATACGCTGGCTCTTGCAGGTGAACTTTATAAGTTACGTGCAACTGACTTCG
TTGGCGCTGCCCAGTCTGACTGACAGTAAGGGCTCCCTGGTGGTGGTGTCTTCTTTGCTA
GGCCGCGTGCCCACATCCTTCTCTAGCCCCTACTCGGCGGCCAAGTTCGCGCTGGACAGC
TTCTTCGACTCTCTTCGGCGAGAGCTGGACATGCAAGATGTGAACGTGGCCATCACCATG
TGTGTCCTGGGCCTCCGAGATCATGCTTCAGCCGCTGAAGGAGTCAGGGGTGTCACGAGG
GCCAAGGCGGCCCCAGGGCCCAAGGCAGCCCTGGCTGTGATCCGTGGCAGTGCTACACGG
GCCTCCGGTGTCTTCTACCCATGGCGCTTCCACCTGCTCTGCCTGCTTCGGGGCTGGCTG
CCACACCCGAGGGCCTGGTTCATCCGCCAGGAGCTCAACATCACTGCCTCTGCTGCTGCC
TGAGCTCCTGGCCAGGTGCCCCTTCATCTCCCCAGAAGACTTTCCAAGAAGGCATCCTAG
AGCTGGGACACCTCCGAGATAGTGGCCCAGGCTCAAGAGAAAGTCATCAAGACAGCAAAG
TAAAATGGAGAAAAACCATCAGCACCTAAAAACAATCAAAACTTAAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAAGAGGGCTAAGCTGAGGCCCTTCAGGGCTTTCCCTGGAAGTGGCAGATCGTCCCCT
GCTGAGGGGACGCCGGCGTGAATGGACCCAGTGAAGGCCATGAAGGTGCTGCTCCTCACG
GGGCTGGGAGCCCTGTTCTTCGCCTATTATTGGGGTGACAATTTTGACCCAGCCAGCCTC
CGTGGAGCCCGTGTGCTGTTAACAGGAGCCAGCGCAGGCGTTGGGGAGGAACTGGCATAT
CACTATGCGCGCCTGGGCTCACACCTGGTGCTCACTGCCCACACCGAGGCTCTCCTGCAG
AAAGTGGTAGGGAACTGCCGGAAGCTGGGCGCTCCCAAGGTCTTCTACATCGCTGCGGAC
ATGGCCTCCCCCGACGTGCCCGAGCGCGTGGTGCAGTTCGCTCTGGACAAGCTGGGAGGG
CTGGACTACCTGGTGCTGAACCATCTCGGCGCCGCCCCGGCAGGCACGCGGGCCCGCAGC
GCCCAGGCGATACGCTGGCTCTTGCAGGTGAACTTTATAAGTTACGTGCAACTGACTTCG
TTGGCGCTGCCCAGTCTGACTGACAGTAAGGGCTCCCTGGTGGTGGTGTCTTCTTTGCTA
GGCCGCGTGCCCACATCCTTCTCTAGCCCCTACTCGGCGGCCAAGTTCGCGCTGGACAGC
TTCTTCGACTCTCTTCGGCGAGAGCTGGACATGCAAGATGTGAACGTGGCCATCACCATG
TGTGTCCTGGGCCTCCGAGATCATGCTTCAGCCGCTGAAGGAGTCAGGGGTGTCACGAGG
GCCAAGGCGGCCCCAGGGCCCAAGGCAGCCCTGGCTGTGATCCGTGGCAGTGCTACACGG
GCCTCCGGTGTCTTCTACCCATGGCGCTTCCACCTGCTCTGCCTGCTTCGGGGCTGGCTG
CCACACCCGAGGGCCTGGTTCATCCGCCAGGAGCTCAACATCACTGCCTCTGCTGCTGCC
TGAGCTCCTGGCCAGGTGCCCCTTCATCTCCCCAGAAGACTTTCCAAGAAGGCATCCTAG
AGCTGGGACACCTCCGAGATAGTGGCCCAGGCTCAAGAGAAAGTCATCAAGACAGCAAAG
TAAAATGGAGAAAAACCATCAGCACCTAAAAACAATCAAAACTTAAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6Q7D1_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6Q7D1_BOVIN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               917-1013, - strand, RNAz p=0.99704
               

               
               924-1031, - strand, RNAz p=0.529897

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               917-1013, - strand, RNAz p=0.99704
               

               
               924-1031, - strand, RNAz p=0.529897

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               304-416, gnl|bosTau2|chr7 (13343263-13343151)
               

               
               304-416, gnl|canFam2|chr20 (57283315-57283238)
               

               
               304-416, gnl|hg17|chr19 (5637420-5637499)
               

               
               304-416, gnl|Hg17|chr19 (5637427-5637539)
               

               
               304-416, gnl|loxAfr1|scaffold_211596 (459-380)
               

               
               304-416, gnl|oryCun1|scaffold_116262 (6769-6681)
               

               
               304-416, gnl|panTro1|chr20 (5963374-5963453)
               

               
               304-416, gnl|rheMac2|chr19 (5585887-5585966)
               

               
               304-416, gnl|tetNig1|chr1_random (3778941-3779006)
               

               
               304-416, gnl|xenTro1|scaffold_3501 (7680-7795)
               


               
               505-609, gnl|bosTau2|chr7 (13342359-13342256)
               

               
               505-609, gnl|Hg17|chr19 (5638290-5638393)
               


               
               765-1123, gnl|bosTau2|chr7 (13341887-13341513)
               

               
               765-1123, gnl|canFam2|chr20 (57281973-57281670)
               

               
               765-1123, gnl|galGal2|chrUn (113280670-113280987)
               

               
               765-1123, gnl|hg17|chr19 (5638691-5638986)
               

               
               765-1123, gnl|Hg17|chr19 (5638761-5639131)
               

               
               765-1123, gnl|panTro1|chr20 (5964644-5964942)
               

               
               765-1123, gnl|rheMac2|chr19 (5587100-5587406)
               

               
               765-1123, gnl|xenTro1|scaffold_3501 (9023-9298)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               304-416, gnl|bosTau2|chr7 (13343263-13343151)
               

               
               304-416, gnl|canFam2|chr20 (57283315-57283238)
               

               
               304-416, gnl|hg17|chr19 (5637420-5637499)
               

               
               304-416, gnl|Hg17|chr19 (5637427-5637539)
               

               
               304-416, gnl|loxAfr1|scaffold_211596 (459-380)
               

               
               304-416, gnl|oryCun1|scaffold_116262 (6769-6681)
               

               
               304-416, gnl|panTro1|chr20 (5963374-5963453)
               

               
               304-416, gnl|rheMac2|chr19 (5585887-5585966)
               

               
               304-416, gnl|tetNig1|chr1_random (3778941-3779006)
               

               
               304-416, gnl|xenTro1|scaffold_3501 (7680-7795)
               


               
               505-609, gnl|bosTau2|chr7 (13342359-13342256)
               

               
               505-609, gnl|Hg17|chr19 (5638290-5638393)
               


               
               765-1123, gnl|bosTau2|chr7 (13341887-13341513)
               

               
               765-1123, gnl|canFam2|chr20 (57281973-57281670)
               

               
               765-1123, gnl|galGal2|chrUn (113280670-113280987)
               

               
               765-1123, gnl|hg17|chr19 (5638691-5638986)
               

               
               765-1123, gnl|Hg17|chr19 (5638761-5639131)
               

               
               765-1123, gnl|panTro1|chr20 (5964644-5964942)
               

               
               765-1123, gnl|rheMac2|chr19 (5587100-5587406)
               

               
               765-1123, gnl|xenTro1|scaffold_3501 (9023-9298)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cst (0.140036)
               

               
               ste (0.135208)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               cty (0.10408)

	917-1013, - strand, RNAz p=0.99704
	924-1031, - strand, RNAz p=0.529897

	304-416, gnl\|bosTau2\|chr7 (13343263-13343151)
	304-416, gnl\|canFam2\|chr20 (57283315-57283238)
	304-416, gnl\|hg17\|chr19 (5637420-5637499)
	304-416, gnl\|Hg17\|chr19 (5637427-5637539)
	304-416, gnl\|loxAfr1\|scaffold_211596 (459-380)
	304-416, gnl\|oryCun1\|scaffold_116262 (6769-6681)
	304-416, gnl\|panTro1\|chr20 (5963374-5963453)
	304-416, gnl\|rheMac2\|chr19 (5585887-5585966)
	304-416, gnl\|tetNig1\|chr1_random (3778941-3779006)
	304-416, gnl\|xenTro1\|scaffold_3501 (7680-7795)

	505-609, gnl\|bosTau2\|chr7 (13342359-13342256)
	505-609, gnl\|Hg17\|chr19 (5638290-5638393)

	765-1123, gnl\|bosTau2\|chr7 (13341887-13341513)
	765-1123, gnl\|canFam2\|chr20 (57281973-57281670)
	765-1123, gnl\|galGal2\|chrUn (113280670-113280987)
	765-1123, gnl\|hg17\|chr19 (5638691-5638986)
	765-1123, gnl\|Hg17\|chr19 (5638761-5639131)
	765-1123, gnl\|panTro1\|chr20 (5964644-5964942)
	765-1123, gnl\|rheMac2\|chr19 (5587100-5587406)
	765-1123, gnl\|xenTro1\|scaffold_3501 (9023-9298)