Ss1.1-Pig4-TMW8054L01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTTGCGGCCCTGCGGTGTTTCTCTTATAAGGCTAAGAAAATTACAAGGCACATGTCAGT GAATCAGCAAGATCTAGATCCAGATAGTACCACAGATGTGGAAGATGTTACAGATGCTGA AGAAGAACTCATTAAAAAATGTGAAGAAATGTGGAAAGATATGGAAGAATGTCAGAACAA GTTATCGCTTGTTGGAACTGAGACACTCACTGATTCAAATGCTCAGCTGTCTTTATTAAT TATGCAAGTGAAATGTTTGACTGCTGAACTCAGTCAATGGCAGAAAGAAACTCCTGAAAT GATTCCATTGAATGAAGAAGTTCTGGTAACATTGGGAAAAGAAGAGTTCCAAAAATTGAG CCATGATCTTGAATTGGTACTATCTACTATTAAGTCAAAGAATGAAAAGTTAAAAGAAGA TTTGGAAAGGGAGCAAAAATGGCTGGATGAACAGCAACAGATATTGGAATCTCTTAATGT AGTACACAGTGAATTGAAACAGCAGGTCGTGACATTTTCTGAATCAAGAGTCTTTAATGA GTTGAAAACGAAAATGCGTGATATAAAAGAATATAAGGAGAAACTCTTGGTTACCTTGGG TGAGTTTCTAGAAGACCATTTTCCTCTGCCTGATAGAAGTGTTAAAAAGAAAAAGAAAAA CACTCAAGAATCAACGGCACAACTGATAACACTGCATGAAATCTTAGAGGTTAAAAAATG GCCATACTTTAGCAATTAATCAGCCTAATGCTCTGCTTATGAAAATTTTGCCATCATTAT TTTTTTCATTTTGGATTGAGAAAATGAATCCAGATATGGAAGAAAGTATGGGATGTTGGA AAAAAGAACCTCTTAAATAGTGGAACATCTGGTAACTAATTTGCAAGAAGTTTTAAAGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTTGCGGCCCTGCGGTGTTTCTCTTATAAGGCTAAGAAAATTACAAGGCACATGTCAGT GAATCAGCAAGATCTAGATCCAGATAGTACCACAGATGTGGAAGATGTTACAGATGCTGA AGAAGAACTCATTAAAAAATGTGAAGAAATGTGGAAAGATATGGAAGAATGTCAGAACAA GTTATCGCTTGTTGGAACTGAGACACTCACTGATTCAAATGCTCAGCTGTCTTTATTAAT TATGCAAGTGAAATGTTTGACTGCTGAACTCAGTCAATGGCAGAAAGAAACTCCTGAAAT GATTCCATTGAATGAAGAAGTTCTGGTAACATTGGGAAAAGAAGAGTTCCAAAAATTGAG CCATGATCTTGAATTGGTACTATCTACTATTAAGTCAAAGAATGAAAAGTTAAAAGAAGA TTTGGAAAGGGAGCAAAAATGGCTGGATGAACAGCAACAGATATTGGAATCTCTTAATGT AGTACACAGTGAATTGAAACAGCAGGTCGTGACATTTTCTGAATCAAGAGTCTTTAATGA GTTGAAAACGAAAATGCGTGATATAAAAGAATATAAGGAGAAACTCTTGGTTACCTTGGG TGAGTTTCTAGAAGACCATTTTCCTCTGCCTGATAGAAGTGTTAAAAAGAAAAAGAAAAA CACTCAAGAATCAACGGCACAACTGATAACACTGCATGAAATCTTAGAGGTTAAAAAATG GCCATACTTTAGCAATTAATCAGCCTAATGCTCTGCTTATGAAAATTTTGCCATCATTAT TTTTTTCATTTTGGATTGAGAAAATGAATCCAGATATGGAAGAAAGTATGGGATGTTGGA AAAAAGAACCTCTTAAATAGTGGAACATCTGGTAACTAATTTGCAAGAAGTTTTAAAGAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 744-860, + strand, RNAz p=0.526201 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 744-860, + strand, RNAz p=0.526201 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of AY692424, + |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 4-226, gnl|bosTau2|chr6 (28129628-28129852) | |
| 4-226, gnl|Hg17|chr5 (64886531-64884076) | |
| 4-226, gnl|Mm7|chrX (48727542-48727761) | |
| 18-181, gnl|bosTau2|chr20 (8877497-8877662) | |
| 18-181, gnl|canFam2|chr2 (54162714-54162953) | |
| 18-181, gnl|dasNov1|scaffold_167820 (795-572) | |
| 18-181, gnl|echTel1|scaffold_160641 (4192-4414) | |
| 18-181, gnl|galGal2|chrZ (3847606-3847782) | |
| 18-181, gnl|hg17|chr5 (64886321-64886532) | |
| 18-181, gnl|Hg17|chr5 (64886530-64886368) | |
| 18-181, gnl|mm7|chr13 (101368636-101368437) | |
| 18-181, gnl|Mm7|chr13 (101368421-101368600) | |
| 18-181, gnl|oryCun1|scaffold_189550 (20848-20646) | |
| 18-181, gnl|panTro1|chr4 (51046788-51046577) | |
| 18-181, gnl|rheMac2|chr6 (63430193-63430403) | |
| 18-181, gnl|rn3|chr2 (35082110-35081922) | |
| 524-655, gnl|bosTau2|chr20 (8894348-8894479) | |
| 524-655, gnl|canFam2|chr2 (54139974-54140290) | |
| 524-655, gnl|echTel1|scaffold_312914 (8547-8917) | |
| 524-655, gnl|galGal2|chrZ (3835890-3836167) | |
| 524-655, gnl|hg17|chr5 (64860037-64860360) | |
| 524-655, gnl|Hg17|chr5 (64860166-64860035) | |
| 524-655, gnl|mm7|chr13 (101380581-101380280) | |
| 524-655, gnl|Mm7|chr13 (101380450-101380581) | |
| 524-655, gnl|monDom2|scaffold_27 (30745097-30745432) | |
| 524-655, gnl|oryCun1|scaffold_122344 (10532-10173) | |
| 524-655, gnl|panTro1|chr4_random (39984409-39984086) | |
| 524-655, gnl|rheMac2|chr6 (63397555-63397873) | |
| 524-655, gnl|rn3|chr2 (35098070-35097775) | |
| 708-900, gnl|bosTau2|chr20 (8923719-8923909) | |
| 708-900, gnl|Hg17|chr5 (64805537-64805344) | |
| 708-900, gnl|Mm7|chr13 (101432154-101432351) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-226, gnl|bosTau2|chr6 (28129628-28129852) | |
| 4-226, gnl|Hg17|chr5 (64886531-64884076) | |
| 4-226, gnl|Mm7|chrX (48727542-48727761) | |
| 18-181, gnl|bosTau2|chr20 (8877497-8877662) | |
| 18-181, gnl|canFam2|chr2 (54162714-54162953) | |
| 18-181, gnl|dasNov1|scaffold_167820 (795-572) | |
| 18-181, gnl|echTel1|scaffold_160641 (4192-4414) | |
| 18-181, gnl|galGal2|chrZ (3847606-3847782) | |
| 18-181, gnl|hg17|chr5 (64886321-64886532) | |
| 18-181, gnl|Hg17|chr5 (64886530-64886368) | |
| 18-181, gnl|mm7|chr13 (101368636-101368437) | |
| 18-181, gnl|Mm7|chr13 (101368421-101368600) | |
| 18-181, gnl|oryCun1|scaffold_189550 (20848-20646) | |
| 18-181, gnl|panTro1|chr4 (51046788-51046577) | |
| 18-181, gnl|rheMac2|chr6 (63430193-63430403) | |
| 18-181, gnl|rn3|chr2 (35082110-35081922) | |
| 524-655, gnl|bosTau2|chr20 (8894348-8894479) | |
| 524-655, gnl|canFam2|chr2 (54139974-54140290) | |
| 524-655, gnl|echTel1|scaffold_312914 (8547-8917) | |
| 524-655, gnl|galGal2|chrZ (3835890-3836167) | |
| 524-655, gnl|hg17|chr5 (64860037-64860360) | |
| 524-655, gnl|Hg17|chr5 (64860166-64860035) | |
| 524-655, gnl|mm7|chr13 (101380581-101380280) | |
| 524-655, gnl|Mm7|chr13 (101380450-101380581) | |
| 524-655, gnl|monDom2|scaffold_27 (30745097-30745432) | |
| 524-655, gnl|oryCun1|scaffold_122344 (10532-10173) | |
| 524-655, gnl|panTro1|chr4_random (39984409-39984086) | |
| 524-655, gnl|rheMac2|chr6 (63397555-63397873) | |
| 524-655, gnl|rn3|chr2 (35098070-35097775) | |
| 708-900, gnl|bosTau2|chr20 (8923719-8923909) | |
| 708-900, gnl|Hg17|chr5 (64805537-64805344) | |
| 708-900, gnl|Mm7|chr13 (101432154-101432351) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| tbr (0.154178) | |
| lun (0.150489) | |
| ese (0.126502) | |
| ecc (0.115035) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tbr (0.154178) | |
| lun (0.150489) | |
| ese (0.126502) | |
| ecc (0.115035) |