Ss1.1-Pig4-TMW8054L12.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGTGGACAAGCTCTACGACCTCCTGTTCACCGACTCGCCCTTTCAGAGGGATTTCATGG AGCAGCGACGCTTCTCAGATATCATCTTCCACCCGTGGAAGAAGGAAGAGAATGGAAACC AGAGCCGAGTGATTCTTTACACCATCACCCTTACCAACCCCCTGGCTCCCAAAACTGCCA CCGTCAGGGAGACACAGACCATGTACAAGGCGAGCCAGGAGAGAGAATGCTACGTGATCG ACGCCGAGGTCCTCACCCACGACGTGCCATACCACGACTACTTCTACACCATCAACCGCT ACACTCTCACGCGCGTGGCTCGGAACAAGAGTCGACTCAGGGTCTCCACAGAGCTGCGCT ATCGAAAACAGCCCTGGGGGCTAGTGAAAACTTTCATCGAGAAGAACTTCTGGAGTGGGC TGGAGGACTACTTCCGCCACTTGGAGAGCGAGCTGACCAAAACGGAGAGCACCTACCTGG CTGAGATGCACAGACAGTCTCCCAAAGAGAAGGCCAGCAAGCCCCCGACGGTGCGGCGGA GGAAGCGTCCCCACGCCCACCTGCGGGTGCCGCACCTGGAAGAGGTGATGAGCCCCGTCA CCACACCCACGGATGAAGATGTGGGCCACAGGATCAAACATGTGGCAGGTTCCACGCAGA CACGGCATATCCCCGAGGACACCCCTAGCGGTTTCCACCTGCAGAGCGTGTCCAAGCTGC TGCTGGTTATCAGCTGTGTTCTGGTGCTGCTGGTCATCCTTAACGTGATGCTCTTCTACA AACTCTGGATGTTGGAATACACCACCCAGACCCTCACTGCCTGGCAGGGTCTAAGGCTCC AAGAAAGGTTACCCCAGTCTCAGACAGAGTGGGCCCAGCTCTTAGAGTCCCAGCAAAAGT ACCATGATACTGAGCTCCAAAAATGGAGGGAGATCATCAAATCCTCGGTGATGCTTCTTG ACCAGATGAAGGACTCACTCATCAATCTTCAGAACGGCATCAGGTCCCGTGACTACACGT CCGAAAGCGAAGAGAAGAGGAACCGCTATCACTGACAAGGCAGGAGCAGGGGTGTCTGCT GGAGGCCTGTGCAATACCTGTACATAGACCATATAAATATATATATAAATATATATATAT AATACACACTGGCTGTGCAGCAGCAAGACTATAGGTTAGATGGAAAGAGAGCTGGTTTTT TCCTCTTGGTAACCCATAGCCATGACAGGCATTTAAAGAGAGAACCCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGTGGACAAGCTCTACGACCTCCTGTTCACCGACTCGCCCTTTCAGAGGGATTTCATGG AGCAGCGACGCTTCTCAGATATCATCTTCCACCCGTGGAAGAAGGAAGAGAATGGAAACC AGAGCCGAGTGATTCTTTACACCATCACCCTTACCAACCCCCTGGCTCCCAAAACTGCCA CCGTCAGGGAGACACAGACCATGTACAAGGCGAGCCAGGAGAGAGAATGCTACGTGATCG ACGCCGAGGTCCTCACCCACGACGTGCCATACCACGACTACTTCTACACCATCAACCGCT ACACTCTCACGCGCGTGGCTCGGAACAAGAGTCGACTCAGGGTCTCCACAGAGCTGCGCT ATCGAAAACAGCCCTGGGGGCTAGTGAAAACTTTCATCGAGAAGAACTTCTGGAGTGGGC TGGAGGACTACTTCCGCCACTTGGAGAGCGAGCTGACCAAAACGGAGAGCACCTACCTGG CTGAGATGCACAGACAGTCTCCCAAAGAGAAGGCCAGCAAGCCCCCGACGGTGCGGCGGA GGAAGCGTCCCCACGCCCACCTGCGGGTGCCGCACCTGGAAGAGGTGATGAGCCCCGTCA CCACACCCACGGATGAAGATGTGGGCCACAGGATCAAACATGTGGCAGGTTCCACGCAGA CACGGCATATCCCCGAGGACACCCCTAGCGGTTTCCACCTGCAGAGCGTGTCCAAGCTGC TGCTGGTTATCAGCTGTGTTCTGGTGCTGCTGGTCATCCTTAACGTGATGCTCTTCTACA AACTCTGGATGTTGGAATACACCACCCAGACCCTCACTGCCTGGCAGGGTCTAAGGCTCC AAGAAAGGTTACCCCAGTCTCAGACAGAGTGGGCCCAGCTCTTAGAGTCCCAGCAAAAGT ACCATGATACTGAGCTCCAAAAATGGAGGGAGATCATCAAATCCTCGGTGATGCTTCTTG ACCAGATGAAGGACTCACTCATCAATCTTCAGAACGGCATCAGGTCCCGTGACTACACGT CCGAAAGCGAAGAGAAGAGGAACCGCTATCACTGACAAGGCAGGAGCAGGGGTGTCTGCT GGAGGCCTGTGCAATACCTGTACATAGACCATATAAATATATATATAAATATATATATAT AATACACACTGGCTGTGCAGCAGCAAGACTATAGGTTAGATGGAAAGAGAGCTGGTTTTT TCCTCTTGGTAACCCATAGCCATGACAGGCATTTAAAGAGAGAACCCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 533-650, - strand, RNAz p=0.695301 | |
| 1023-1139, + strand, RNAz p=0.628376 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 533-650, - strand, RNAz p=0.695301 | |
| 1023-1139, + strand, RNAz p=0.628376 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of AY358924, + |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 195-341, gnl|bosTau2|chr15 (19011797-19011943) | |
| 195-341, gnl|canFam2|chr5 (13830044-13829948) | |
| 195-341, gnl|danRer3|chr18 (48428885-48428980) | |
| 195-341, gnl|dasNov1|scaffold_128496 (3325-3229) | |
| 195-341, gnl|echTel1|scaffold_320026 (2374-2278) | |
| 195-341, gnl|fr1|chrUn (163098433-163098337) | |
| 195-341, gnl|hg17|chr11 (122986112-122986208) | |
| 195-341, gnl|Hg17|chr11 (122986111-122986257) | |
| 195-341, gnl|loxAfr1|scaffold_2885 (118706-118610) | |
| 195-341, gnl|mm7|chr9 (40236379-40236283) | |
| 195-341, gnl|Mm7|chr9 (40236378-40236232) | |
| 195-341, gnl|monDom2|scaffold_2 (112928292-112928196) | |
| 195-341, gnl|oryCun1|scaffold_213135 (239-335) | |
| 195-341, gnl|panTro1|chr9 (125028466-125028562) | |
| 195-341, gnl|rheMac2|chr14 (121967469-121967565) | |
| 195-341, gnl|rn3|chr8 (43277387-43277291) | |
| 195-341, gnl|tetNig1|chrUn_random (13653604-13653508) | |
| 195-341, gnl|xenTro1|scaffold_348 (336586-336490) | |
| 444-650, gnl|bosTau2|chr15 (19014943-19015149) | |
| 444-650, gnl|Hg17|chr11 (122989372-122989578) | |
| 444-650, gnl|Mm7|chr9 (40234428-40234222) | |
| 740-861, gnl|bosTau2|chr15 (19020421-19020542) | |
| 740-861, gnl|canFam2|chr5 (13822966-13822836) | |
| 740-861, gnl|danRer3|chr18 (48436318-48436440) | |
| 740-861, gnl|echTel1|scaffold_285089 (8443-8316) | |
| 740-861, gnl|fr1|chrUn (163096717-163096600) | |
| 740-861, gnl|hg17|chr11 (122994596-122994726) | |
| 740-861, gnl|Hg17|chr11 (122994611-122994732) | |
| 740-861, gnl|mm7|chr9 (40230011-40229884) | |
| 740-861, gnl|Mm7|chr9 (40229997-40229876) | |
| 740-861, gnl|monDom2|scaffold_2 (112919756-112919629) | |
| 740-861, gnl|panTro1|chr9 (125036948-125037078) | |
| 740-861, gnl|rheMac2|chr14 (121976714-121976844) | |
| 740-861, gnl|rn3|chr8 (43270980-43270852) | |
| 740-861, gnl|tetNig1|chrUn_random (13651415-13651295) | |
| 740-861, gnl|xenTro1|scaffold_348 (333380-333253) | |
| 963-1139, gnl|bosTau2|chr15 (19025146-19025322) | |
| 963-1139, gnl|Hg17|chr11 (122998421-122998600) | |
| 963-1139, gnl|Mm7|chr9 (40227983-40227807) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 195-341, gnl|bosTau2|chr15 (19011797-19011943) | |
| 195-341, gnl|canFam2|chr5 (13830044-13829948) | |
| 195-341, gnl|danRer3|chr18 (48428885-48428980) | |
| 195-341, gnl|dasNov1|scaffold_128496 (3325-3229) | |
| 195-341, gnl|echTel1|scaffold_320026 (2374-2278) | |
| 195-341, gnl|fr1|chrUn (163098433-163098337) | |
| 195-341, gnl|hg17|chr11 (122986112-122986208) | |
| 195-341, gnl|Hg17|chr11 (122986111-122986257) | |
| 195-341, gnl|loxAfr1|scaffold_2885 (118706-118610) | |
| 195-341, gnl|mm7|chr9 (40236379-40236283) | |
| 195-341, gnl|Mm7|chr9 (40236378-40236232) | |
| 195-341, gnl|monDom2|scaffold_2 (112928292-112928196) | |
| 195-341, gnl|oryCun1|scaffold_213135 (239-335) | |
| 195-341, gnl|panTro1|chr9 (125028466-125028562) | |
| 195-341, gnl|rheMac2|chr14 (121967469-121967565) | |
| 195-341, gnl|rn3|chr8 (43277387-43277291) | |
| 195-341, gnl|tetNig1|chrUn_random (13653604-13653508) | |
| 195-341, gnl|xenTro1|scaffold_348 (336586-336490) | |
| 444-650, gnl|bosTau2|chr15 (19014943-19015149) | |
| 444-650, gnl|Hg17|chr11 (122989372-122989578) | |
| 444-650, gnl|Mm7|chr9 (40234428-40234222) | |
| 740-861, gnl|bosTau2|chr15 (19020421-19020542) | |
| 740-861, gnl|canFam2|chr5 (13822966-13822836) | |
| 740-861, gnl|danRer3|chr18 (48436318-48436440) | |
| 740-861, gnl|echTel1|scaffold_285089 (8443-8316) | |
| 740-861, gnl|fr1|chrUn (163096717-163096600) | |
| 740-861, gnl|hg17|chr11 (122994596-122994726) | |
| 740-861, gnl|Hg17|chr11 (122994611-122994732) | |
| 740-861, gnl|mm7|chr9 (40230011-40229884) | |
| 740-861, gnl|Mm7|chr9 (40229997-40229876) | |
| 740-861, gnl|monDom2|scaffold_2 (112919756-112919629) | |
| 740-861, gnl|panTro1|chr9 (125036948-125037078) | |
| 740-861, gnl|rheMac2|chr14 (121976714-121976844) | |
| 740-861, gnl|rn3|chr8 (43270980-43270852) | |
| 740-861, gnl|tetNig1|chrUn_random (13651415-13651295) | |
| 740-861, gnl|xenTro1|scaffold_348 (333380-333253) | |
| 963-1139, gnl|bosTau2|chr15 (19025146-19025322) | |
| 963-1139, gnl|Hg17|chr11 (122998421-122998600) | |
| 963-1139, gnl|Mm7|chr9 (40227983-40227807) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.132153) | |
| cbr (0.127975) |