Non-Coding RNA Search

Ss1.1-Pig4-TMW8054L13.3

Sequence:


               
               ACAAATTGACACACTGCCCATCTTACAAACTTCCTTCCCTCCCTCCCAGCCCTGCCCCTA
TCTTGTTCACTGACAAGGCCTGCCCCCTGGTGGGCAGGGAAGGGAATTCAAGCCGAGCAG
AAGAGTCCATGAATTCTCTTAGGAGCTGGTGGGCGAAATGCTGGACCTGGGAGAACCAGG
AATCAGTGGATTTGGATACTGCTCTGGCTCCTCCGAGGGAAACCAACCTCTAAGACAGAA
CGAACCACCTCCTGCCGGCTGTGCTCTGCCTCACGGATCTGAGCTGCCATCTGTGGGAGA
GAGTCTGCTTAGATAAGTGCAGGGTGGTGGTGGTGGGGGCTGGGTGCTTCAGAGGCCTTT
CCTTTAACTTACCTCTTTGATCACCTCATCCTCTTTTTCCTCATAGGAATCCAAACCTTT
TACCATGGACTTCTTGAATCTAAAAAAGAAAAATAGCAAGTCAGCCCAGAACCCCTGTGC
CTGCTAGTTGTGAAAAGATGCTCAGTAGACCATGTTCTTCCTAAATTTTGAATAATTTCA
AATTCCCAGAAATAAAAGAGTACAGGGAACACCTGTATGCCTCTCCTCCAGATTTACTGT
TAACATTAAAGCCATCCCTTTTCAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAAATTGACACACTGCCCATCTTACAAACTTCCTTCCCTCCCTCCCAGCCCTGCCCCTA
TCTTGTTCACTGACAAGGCCTGCCCCCTGGTGGGCAGGGAAGGGAATTCAAGCCGAGCAG
AAGAGTCCATGAATTCTCTTAGGAGCTGGTGGGCGAAATGCTGGACCTGGGAGAACCAGG
AATCAGTGGATTTGGATACTGCTCTGGCTCCTCCGAGGGAAACCAACCTCTAAGACAGAA
CGAACCACCTCCTGCCGGCTGTGCTCTGCCTCACGGATCTGAGCTGCCATCTGTGGGAGA
GAGTCTGCTTAGATAAGTGCAGGGTGGTGGTGGTGGGGGCTGGGTGCTTCAGAGGCCTTT
CCTTTAACTTACCTCTTTGATCACCTCATCCTCTTTTTCCTCATAGGAATCCAAACCTTT
TACCATGGACTTCTTGAATCTAAAAAAGAAAAATAGCAAGTCAGCCCAGAACCCCTGTGC
CTGCTAGTTGTGAAAAGATGCTCAGTAGACCATGTTCTTCCTAAATTTTGAATAATTTCA
AATTCCCAGAAATAAAAGAGTACAGGGAACACCTGTATGCCTCTCCTCCAGATTTACTGT
TAACATTAAAGCCATCCCTTTTCAAAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               1-107, - strand, RNAz p=0.990887
               

               
               131-227, - strand, RNAz p=0.99981
               

               
               348-449, - strand, RNAz p=0.945568

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-107, - strand, RNAz p=0.990887
               

               
               131-227, - strand, RNAz p=0.99981
               

               
               348-449, - strand, RNAz p=0.945568

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               431-527, - strand, RNAmicro p=0.908617

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               431-527, - strand, RNAmicro p=0.908617

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               1-607, gnl|bosTau2|chr15 (14196269-14195663)
               

               
               1-607, gnl|Hg17|chr11 (118387761-118386522)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-607, gnl|bosTau2|chr15 (14196269-14195663)
               

               
               1-607, gnl|Hg17|chr11 (118387761-118386522)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               fty (0.17584)
               

               
               cut (0.169924)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               cut (0.169924)

	1-107, - strand, RNAz p=0.990887
	131-227, - strand, RNAz p=0.99981
	348-449, - strand, RNAz p=0.945568

	1-607, gnl\|bosTau2\|chr15 (14196269-14195663)
	1-607, gnl\|Hg17\|chr11 (118387761-118386522)