Non-Coding RNA Search

Ss1.1-Pig4-TMW8054L18.5

Sequence:


               
               AGGAATGCATGCATTGTGTCTTAACCCCTTAAGTGCCTTGAGACGTCTTTGTATGTCTAA
AGAAAAGGCACTCATTTGACCCCATTAGGAGGTATGTATGTATATTGTACATTTACAGTT
TTATGCATTTTGGATCAGTTCACATTTTTTAAAATAGCTTCTTGTATCAAGAGTTATGCA
GTCAAAGAAGGGTAATGAAATCCTATTTCTTACTCAATTCCTGTATTTTGCCACAAGAAG
CCAAGACAATTTGTGTTACTCTGAGTGAGCGCTCTGCTGCTATGGGATTATTTGAAATCT
GCACATTCCTTTCCTGCGGGACAAGGGTTACAGTTTAGCAGCCGAAGTTAAAAGATGCTT
TATTCTTCAAATTTCGTATTTATTTTATCCCTAACTTTAGAACTGGCATCTGATATACAC
ATTAAAGTTAAACATATTGATACTCTAAGGTAAACTTAGAGCAGTTGATTGTGTGACTGA
CTTCTGTCACTAAGTATTGCTCTTCAGCATTCATTGCAGTTCATATCAAGCTTTGTTCAC
ACTGGTCTGTTGGCTGGGATACCACACATGAGGAATGAAATGTGACAGAATTATTTCTAA
ATGTAATCTCTCAGTAACTGAAATGAGGGCTTTCTTGTCATTTTTGTGTACAATTAAATT
ACTCTAGTTTATATATACGTATTAAGTTATATGCATGTTATAGGGAGCATTTTGATTGTC
CAGCCTGATGGAGGATCTGATTTCCTTTAAGGATGTGTATATTTTCTTCTTCAGGGTTTT
TGTTTTGTTTTGTTTTTAAGTCTACAGAGAGTTAGAACTTTAAAATTGTCCAGTTTTAAT
ATAAGTGGAAATTTTCTCAGCTACTGAAATGTTATATATTACACAATTATTTTATATAGA
TTATGGTTAAAATAGATTCATTTACTAGTGATTTCTGAATATTTCTGTATAGTCTTGATA
AAATTTAGAGTTGAAGGTAGATATTTTGGAATGTCAGTTAGTATGGGGGAAAATGTACAT
TTAATAATTTTCAGTATAATTTAAATGATGTTATTCCAGATAGTCAAAATTCATAATAGT
AAAATGTTAGGAAGTTAATTCCTAAATATTAACAGCCAAGATGCCAAATAAATTATTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAATGCATGCATTGTGTCTTAACCCCTTAAGTGCCTTGAGACGTCTTTGTATGTCTAA
AGAAAAGGCACTCATTTGACCCCATTAGGAGGTATGTATGTATATTGTACATTTACAGTT
TTATGCATTTTGGATCAGTTCACATTTTTTAAAATAGCTTCTTGTATCAAGAGTTATGCA
GTCAAAGAAGGGTAATGAAATCCTATTTCTTACTCAATTCCTGTATTTTGCCACAAGAAG
CCAAGACAATTTGTGTTACTCTGAGTGAGCGCTCTGCTGCTATGGGATTATTTGAAATCT
GCACATTCCTTTCCTGCGGGACAAGGGTTACAGTTTAGCAGCCGAAGTTAAAAGATGCTT
TATTCTTCAAATTTCGTATTTATTTTATCCCTAACTTTAGAACTGGCATCTGATATACAC
ATTAAAGTTAAACATATTGATACTCTAAGGTAAACTTAGAGCAGTTGATTGTGTGACTGA
CTTCTGTCACTAAGTATTGCTCTTCAGCATTCATTGCAGTTCATATCAAGCTTTGTTCAC
ACTGGTCTGTTGGCTGGGATACCACACATGAGGAATGAAATGTGACAGAATTATTTCTAA
ATGTAATCTCTCAGTAACTGAAATGAGGGCTTTCTTGTCATTTTTGTGTACAATTAAATT
ACTCTAGTTTATATATACGTATTAAGTTATATGCATGTTATAGGGAGCATTTTGATTGTC
CAGCCTGATGGAGGATCTGATTTCCTTTAAGGATGTGTATATTTTCTTCTTCAGGGTTTT
TGTTTTGTTTTGTTTTTAAGTCTACAGAGAGTTAGAACTTTAAAATTGTCCAGTTTTAAT
ATAAGTGGAAATTTTCTCAGCTACTGAAATGTTATATATTACACAATTATTTTATATAGA
TTATGGTTAAAATAGATTCATTTACTAGTGATTTCTGAATATTTCTGTATAGTCTTGATA
AAATTTAGAGTTGAAGGTAGATATTTTGGAATGTCAGTTAGTATGGGGGAAAATGTACAT
TTAATAATTTTCAGTATAATTTAAATGATGTTATTCCAGATAGTCAAAATTCATAATAGT
AAAATGTTAGGAAGTTAATTCCTAAATATTAACAGCCAAGATGCCAAATAAATTATTTGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-117, + strand, RNAz p=0.793081

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-117, + strand, RNAz p=0.793081

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1137, gnl|bosTau2|chr2 (43806783-43805659)
               

               
               1-1137, gnl|Hg17|chr2 (120451598-120452735)
               

               
               1-1137, gnl|Mm7|chr1 (119519664-119518620)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1137, gnl|bosTau2|chr2 (43806783-43805659)
               

               
               1-1137, gnl|Hg17|chr2 (120451598-120452735)
               

               
               1-1137, gnl|Mm7|chr1 (119519664-119518620)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               tbr (0.154178)
               

               
               ctl (0.153069)
               

               
               ova (0.129132)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.154178)
               

               
               ctl (0.153069)
               

               
               ova (0.129132)

	1-1137, gnl\|bosTau2\|chr2 (43806783-43805659)
	1-1137, gnl\|Hg17\|chr2 (120451598-120452735)
	1-1137, gnl\|Mm7\|chr1 (119519664-119518620)